Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2795 and GFF2796 are separated by 43 nucleotides GFF2796 and GFF2797 are separated by 158 nucleotides
GFF2795 - hypothetical protein, at 499,591 to 500,436
GFF2795
GFF2796 - putative NADH-specific resorcinol 4-hydroxylase, at 500,480 to 502,009
GFF2796
GFF2797 - Biphenyl-2,3-diol 1,2-dioxygenase, at 502,168 to 503,136
GFF2797
Position (kb) 500
501
502
503 Strain fitness (log2 ratio) -2
-1
0
1 at 499.522 kb on + strand at 499.523 kb on - strand at 499.523 kb on - strand at 499.523 kb on - strand at 499.523 kb on - strand at 499.592 kb on + strand at 499.763 kb on + strand, within GFF2795 at 499.763 kb on + strand, within GFF2795 at 499.763 kb on + strand, within GFF2795 at 499.763 kb on + strand, within GFF2795 at 499.980 kb on - strand, within GFF2795 at 499.980 kb on - strand, within GFF2795 at 500.069 kb on + strand, within GFF2795 at 500.136 kb on - strand, within GFF2795 at 500.199 kb on - strand, within GFF2795 at 500.199 kb on - strand, within GFF2795 at 500.199 kb on - strand, within GFF2795 at 500.397 kb on - strand at 500.571 kb on + strand at 500.571 kb on + strand at 500.571 kb on + strand at 500.572 kb on - strand at 500.960 kb on - strand, within GFF2796 at 500.960 kb on - strand, within GFF2796 at 500.961 kb on + strand, within GFF2796 at 500.961 kb on + strand, within GFF2796 at 500.961 kb on + strand, within GFF2796 at 500.962 kb on - strand, within GFF2796 at 500.962 kb on - strand, within GFF2796 at 500.962 kb on - strand, within GFF2796 at 500.994 kb on + strand, within GFF2796 at 500.995 kb on - strand, within GFF2796 at 500.995 kb on - strand, within GFF2796 at 500.995 kb on - strand, within GFF2796 at 500.998 kb on + strand, within GFF2796 at 501.181 kb on + strand, within GFF2796 at 501.181 kb on + strand, within GFF2796 at 501.182 kb on - strand, within GFF2796 at 501.182 kb on - strand, within GFF2796 at 501.183 kb on + strand, within GFF2796 at 501.183 kb on + strand, within GFF2796 at 501.183 kb on + strand, within GFF2796 at 501.183 kb on + strand, within GFF2796 at 501.184 kb on - strand, within GFF2796 at 501.184 kb on - strand, within GFF2796 at 501.184 kb on - strand, within GFF2796 at 501.333 kb on + strand, within GFF2796 at 501.333 kb on + strand, within GFF2796 at 501.333 kb on + strand, within GFF2796 at 501.333 kb on + strand, within GFF2796 at 501.333 kb on + strand, within GFF2796 at 501.334 kb on - strand, within GFF2796 at 501.334 kb on - strand, within GFF2796 at 501.334 kb on - strand, within GFF2796 at 501.334 kb on - strand, within GFF2796 at 501.334 kb on - strand, within GFF2796 at 501.360 kb on + strand, within GFF2796 at 501.361 kb on - strand, within GFF2796 at 501.361 kb on - strand, within GFF2796 at 501.553 kb on - strand, within GFF2796 at 501.553 kb on - strand, within GFF2796 at 501.682 kb on - strand, within GFF2796 at 501.682 kb on - strand, within GFF2796 at 501.682 kb on - strand, within GFF2796 at 501.870 kb on + strand at 501.870 kb on + strand at 501.871 kb on - strand at 502.286 kb on + strand, within GFF2797 at 502.287 kb on - strand, within GFF2797 at 502.409 kb on + strand, within GFF2797 at 502.409 kb on + strand, within GFF2797 at 502.488 kb on - strand, within GFF2797 at 502.488 kb on - strand, within GFF2797 at 502.488 kb on - strand, within GFF2797 at 502.601 kb on + strand, within GFF2797 at 502.601 kb on + strand, within GFF2797 at 502.601 kb on + strand, within GFF2797 at 502.601 kb on + strand, within GFF2797 at 502.602 kb on - strand, within GFF2797 at 502.602 kb on - strand, within GFF2797 at 502.611 kb on - strand, within GFF2797 at 502.626 kb on - strand, within GFF2797 at 502.658 kb on + strand, within GFF2797 at 502.658 kb on + strand, within GFF2797 at 502.659 kb on - strand, within GFF2797 at 502.659 kb on - strand, within GFF2797
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 499,522 + -1.2 499,523 - +0.8 499,523 - -2.7 499,523 - +0.0 499,523 - -0.7 499,592 + -0.5 499,763 + GFF2795 0.20 -0.5 499,763 + GFF2795 0.20 -0.1 499,763 + GFF2795 0.20 +0.6 499,763 + GFF2795 0.20 +0.6 499,980 - GFF2795 0.46 +0.7 499,980 - GFF2795 0.46 +0.2 500,069 + GFF2795 0.57 -0.5 500,136 - GFF2795 0.64 +0.5 500,199 - GFF2795 0.72 +0.1 500,199 - GFF2795 0.72 +0.2 500,199 - GFF2795 0.72 +0.3 500,397 - +0.3 500,571 + -0.1 500,571 + +0.2 500,571 + +0.3 500,572 - -0.5 500,960 - GFF2796 0.31 +0.3 500,960 - GFF2796 0.31 +0.1 500,961 + GFF2796 0.31 +0.5 500,961 + GFF2796 0.31 +0.4 500,961 + GFF2796 0.31 -0.0 500,962 - GFF2796 0.32 +0.3 500,962 - GFF2796 0.32 +0.5 500,962 - GFF2796 0.32 -0.3 500,994 + GFF2796 0.34 +0.7 500,995 - GFF2796 0.34 -0.3 500,995 - GFF2796 0.34 -1.2 500,995 - GFF2796 0.34 -0.9 500,998 + GFF2796 0.34 +0.2 501,181 + GFF2796 0.46 -0.3 501,181 + GFF2796 0.46 -1.6 501,182 - GFF2796 0.46 -0.6 501,182 - GFF2796 0.46 +0.9 501,183 + GFF2796 0.46 +0.3 501,183 + GFF2796 0.46 -1.4 501,183 + GFF2796 0.46 +0.9 501,183 + GFF2796 0.46 +0.4 501,184 - GFF2796 0.46 -1.6 501,184 - GFF2796 0.46 -0.6 501,184 - GFF2796 0.46 +1.0 501,333 + GFF2796 0.56 -1.6 501,333 + GFF2796 0.56 +1.1 501,333 + GFF2796 0.56 +0.2 501,333 + GFF2796 0.56 -0.3 501,333 + GFF2796 0.56 +0.0 501,334 - GFF2796 0.56 -0.2 501,334 - GFF2796 0.56 -0.3 501,334 - GFF2796 0.56 +0.7 501,334 - GFF2796 0.56 -0.0 501,334 - GFF2796 0.56 -0.1 501,360 + GFF2796 0.58 -0.3 501,361 - GFF2796 0.58 -0.1 501,361 - GFF2796 0.58 +0.5 501,553 - GFF2796 0.70 -0.3 501,553 - GFF2796 0.70 -0.1 501,682 - GFF2796 0.79 -0.2 501,682 - GFF2796 0.79 +0.2 501,682 - GFF2796 0.79 -1.2 501,870 + +0.5 501,870 + -0.5 501,871 - -0.5 502,286 + GFF2797 0.12 +0.5 502,287 - GFF2797 0.12 +0.7 502,409 + GFF2797 0.25 +0.0 502,409 + GFF2797 0.25 +0.1 502,488 - GFF2797 0.33 +1.7 502,488 - GFF2797 0.33 +0.2 502,488 - GFF2797 0.33 +0.3 502,601 + GFF2797 0.45 -0.3 502,601 + GFF2797 0.45 -0.0 502,601 + GFF2797 0.45 -0.3 502,601 + GFF2797 0.45 -0.2 502,602 - GFF2797 0.45 +0.3 502,602 - GFF2797 0.45 +0.5 502,611 - GFF2797 0.46 -0.5 502,626 - GFF2797 0.47 +0.7 502,658 + GFF2797 0.51 -0.9 502,658 + GFF2797 0.51 -0.4 502,659 - GFF2797 0.51 +0.2 502,659 - GFF2797 0.51 -0.1
Or see this region's nucleotide sequence