Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2788 and GFF2789 are separated by 26 nucleotides GFF2789 and GFF2790 overlap by 4 nucleotides GFF2790 and GFF2791 are separated by 240 nucleotides
GFF2788 - Taurine-binding periplasmic protein, at 491,164 to 492,180
GFF2788
GFF2789 - Putative aliphatic sulfonates transport permease protein SsuC, at 492,207 to 493,049
GFF2789
GFF2790 - N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase, at 493,046 to 494,350
GFF2790
GFF2791 - hypothetical protein, at 494,591 to 495,340
GFF2791
Position (kb) 493
494
495 Strain fitness (log2 ratio) -1
0
1
2 at 492.071 kb on + strand, within GFF2788 at 492.397 kb on + strand, within GFF2789 at 492.397 kb on + strand, within GFF2789 at 492.397 kb on + strand, within GFF2789 at 492.397 kb on + strand, within GFF2789 at 492.398 kb on - strand, within GFF2789 at 492.514 kb on + strand, within GFF2789 at 492.514 kb on + strand, within GFF2789 at 492.638 kb on - strand, within GFF2789 at 492.638 kb on - strand, within GFF2789 at 492.638 kb on - strand, within GFF2789 at 492.664 kb on + strand, within GFF2789 at 492.775 kb on + strand, within GFF2789 at 492.817 kb on + strand, within GFF2789 at 492.895 kb on + strand, within GFF2789 at 492.895 kb on + strand, within GFF2789 at 492.895 kb on + strand, within GFF2789 at 492.895 kb on + strand, within GFF2789 at 492.944 kb on + strand, within GFF2789 at 492.944 kb on + strand, within GFF2789 at 493.260 kb on + strand, within GFF2790 at 493.260 kb on + strand, within GFF2790 at 493.261 kb on - strand, within GFF2790 at 493.261 kb on - strand, within GFF2790 at 493.770 kb on + strand, within GFF2790 at 493.770 kb on + strand, within GFF2790 at 493.771 kb on - strand, within GFF2790 at 493.771 kb on - strand, within GFF2790 at 493.845 kb on + strand, within GFF2790 at 493.846 kb on - strand, within GFF2790 at 493.953 kb on + strand, within GFF2790 at 493.953 kb on + strand, within GFF2790 at 493.954 kb on - strand, within GFF2790 at 494.031 kb on + strand, within GFF2790 at 494.093 kb on + strand, within GFF2790 at 494.799 kb on + strand, within GFF2791 at 494.799 kb on + strand, within GFF2791 at 494.799 kb on + strand, within GFF2791 at 494.799 kb on + strand, within GFF2791 at 494.800 kb on - strand, within GFF2791 at 494.800 kb on - strand, within GFF2791 at 494.800 kb on - strand, within GFF2791 at 495.013 kb on + strand, within GFF2791 at 495.013 kb on + strand, within GFF2791 at 495.013 kb on + strand, within GFF2791 at 495.013 kb on + strand, within GFF2791 at 495.013 kb on + strand, within GFF2791 at 495.014 kb on - strand, within GFF2791 at 495.014 kb on - strand, within GFF2791 at 495.014 kb on - strand, within GFF2791 at 495.014 kb on - strand, within GFF2791 at 495.014 kb on - strand, within GFF2791 at 495.014 kb on - strand, within GFF2791 at 495.014 kb on - strand, within GFF2791 at 495.014 kb on - strand, within GFF2791 at 495.014 kb on - strand, within GFF2791 at 495.069 kb on + strand, within GFF2791 at 495.069 kb on + strand, within GFF2791 at 495.104 kb on + strand, within GFF2791 at 495.105 kb on + strand, within GFF2791 at 495.105 kb on + strand, within GFF2791 at 495.105 kb on + strand, within GFF2791 at 495.106 kb on - strand, within GFF2791 at 495.106 kb on - strand, within GFF2791 at 495.106 kb on - strand, within GFF2791 at 495.106 kb on - strand, within GFF2791 at 495.106 kb on - strand, within GFF2791 at 495.215 kb on + strand, within GFF2791 at 495.216 kb on - strand, within GFF2791 at 495.216 kb on - strand, within GFF2791 at 495.298 kb on + strand at 495.298 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 492,071 + GFF2788 0.89 +0.4 492,397 + GFF2789 0.23 +0.4 492,397 + GFF2789 0.23 -0.0 492,397 + GFF2789 0.23 +0.2 492,397 + GFF2789 0.23 +1.0 492,398 - GFF2789 0.23 -1.0 492,514 + GFF2789 0.36 +0.0 492,514 + GFF2789 0.36 -0.9 492,638 - GFF2789 0.51 +1.7 492,638 - GFF2789 0.51 -0.1 492,638 - GFF2789 0.51 -0.7 492,664 + GFF2789 0.54 -0.6 492,775 + GFF2789 0.67 +1.2 492,817 + GFF2789 0.72 -0.1 492,895 + GFF2789 0.82 -0.3 492,895 + GFF2789 0.82 +0.2 492,895 + GFF2789 0.82 +0.1 492,895 + GFF2789 0.82 -0.1 492,944 + GFF2789 0.87 -1.6 492,944 + GFF2789 0.87 +0.6 493,260 + GFF2790 0.16 -0.2 493,260 + GFF2790 0.16 -0.1 493,261 - GFF2790 0.16 -0.5 493,261 - GFF2790 0.16 -0.2 493,770 + GFF2790 0.55 -0.8 493,770 + GFF2790 0.55 -1.2 493,771 - GFF2790 0.56 +0.7 493,771 - GFF2790 0.56 -0.2 493,845 + GFF2790 0.61 +0.2 493,846 - GFF2790 0.61 +0.6 493,953 + GFF2790 0.70 +0.4 493,953 + GFF2790 0.70 +0.1 493,954 - GFF2790 0.70 -0.3 494,031 + GFF2790 0.75 -0.8 494,093 + GFF2790 0.80 +0.0 494,799 + GFF2791 0.28 -0.3 494,799 + GFF2791 0.28 -0.0 494,799 + GFF2791 0.28 -0.3 494,799 + GFF2791 0.28 -0.0 494,800 - GFF2791 0.28 +1.2 494,800 - GFF2791 0.28 -1.0 494,800 - GFF2791 0.28 -0.7 495,013 + GFF2791 0.56 +0.9 495,013 + GFF2791 0.56 +0.2 495,013 + GFF2791 0.56 +0.6 495,013 + GFF2791 0.56 -0.4 495,013 + GFF2791 0.56 +0.6 495,014 - GFF2791 0.56 +0.2 495,014 - GFF2791 0.56 -0.8 495,014 - GFF2791 0.56 +0.6 495,014 - GFF2791 0.56 -0.8 495,014 - GFF2791 0.56 +0.9 495,014 - GFF2791 0.56 -0.0 495,014 - GFF2791 0.56 -0.3 495,014 - GFF2791 0.56 +0.3 495,014 - GFF2791 0.56 +0.2 495,069 + GFF2791 0.64 -0.8 495,069 + GFF2791 0.64 -0.3 495,104 + GFF2791 0.68 -0.0 495,105 + GFF2791 0.69 -1.6 495,105 + GFF2791 0.69 +0.4 495,105 + GFF2791 0.69 -0.3 495,106 - GFF2791 0.69 -0.9 495,106 - GFF2791 0.69 +0.2 495,106 - GFF2791 0.69 -0.5 495,106 - GFF2791 0.69 -0.4 495,106 - GFF2791 0.69 -0.4 495,215 + GFF2791 0.83 +0.2 495,216 - GFF2791 0.83 -0.2 495,216 - GFF2791 0.83 +0.4 495,298 + -0.2 495,298 + +2.2
Or see this region's nucleotide sequence