Strain Fitness in Xanthobacter sp. DMC5 around GFF2773

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2772 and GFF2773 are separated by 186 nucleotidesGFF2773 and GFF2774 are separated by 34 nucleotides GFF2772 - HTH-type transcriptional regulator HdfR, at 474,345 to 475,232 GFF2772 GFF2773 - 3-hydroxyisobutyrate dehydrogenase, at 475,419 to 476,312 GFF2773 GFF2774 - Putative 3-oxopropanoate dehydrogenase, at 476,347 to 477,846 GFF2774 Position (kb) 475 476 477Strain fitness (log2 ratio) -1 0 1at 474.452 kb on - strand, within GFF2772at 474.452 kb on - strand, within GFF2772at 474.452 kb on - strand, within GFF2772at 474.452 kb on - strand, within GFF2772at 474.452 kb on - strand, within GFF2772at 474.517 kb on + strand, within GFF2772at 474.517 kb on + strand, within GFF2772at 474.518 kb on - strand, within GFF2772at 474.518 kb on - strand, within GFF2772at 474.661 kb on + strand, within GFF2772at 474.661 kb on + strand, within GFF2772at 474.661 kb on + strand, within GFF2772at 474.662 kb on - strand, within GFF2772at 474.662 kb on - strand, within GFF2772at 474.724 kb on + strand, within GFF2772at 474.724 kb on + strand, within GFF2772at 474.725 kb on - strand, within GFF2772at 474.725 kb on - strand, within GFF2772at 474.725 kb on - strand, within GFF2772at 474.739 kb on + strand, within GFF2772at 474.739 kb on + strand, within GFF2772at 474.739 kb on + strand, within GFF2772at 474.740 kb on - strand, within GFF2772at 474.755 kb on - strand, within GFF2772at 474.755 kb on - strand, within GFF2772at 474.760 kb on + strand, within GFF2772at 474.778 kb on + strand, within GFF2772at 474.778 kb on + strand, within GFF2772at 474.779 kb on - strand, within GFF2772at 474.932 kb on - strand, within GFF2772at 475.255 kb on + strandat 475.256 kb on - strandat 475.266 kb on + strandat 475.267 kb on - strandat 475.309 kb on + strandat 475.309 kb on + strandat 475.417 kb on + strandat 475.417 kb on + strandat 475.417 kb on + strandat 475.418 kb on - strandat 475.642 kb on - strand, within GFF2773at 475.987 kb on - strand, within GFF2773at 476.122 kb on - strand, within GFF2773at 476.122 kb on - strand, within GFF2773at 476.232 kb on + strandat 476.232 kb on + strandat 476.233 kb on - strandat 476.233 kb on - strandat 476.295 kb on + strandat 476.296 kb on - strandat 476.296 kb on - strandat 476.296 kb on - strandat 476.350 kb on + strandat 476.351 kb on - strandat 476.351 kb on - strandat 476.366 kb on - strandat 476.366 kb on - strandat 476.382 kb on - strandat 476.443 kb on + strandat 476.444 kb on - strandat 476.444 kb on - strandat 476.455 kb on + strandat 476.455 kb on + strandat 476.583 kb on + strand, within GFF2774at 476.584 kb on - strand, within GFF2774at 476.584 kb on - strand, within GFF2774at 476.584 kb on - strand, within GFF2774at 476.714 kb on - strand, within GFF2774at 476.714 kb on - strand, within GFF2774at 476.742 kb on + strand, within GFF2774at 476.742 kb on + strand, within GFF2774at 476.742 kb on + strand, within GFF2774at 476.742 kb on + strand, within GFF2774at 476.742 kb on + strand, within GFF2774at 476.742 kb on + strand, within GFF2774at 476.743 kb on - strand, within GFF2774at 476.743 kb on - strand, within GFF2774at 477.040 kb on + strand, within GFF2774at 477.040 kb on + strand, within GFF2774at 477.040 kb on + strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.041 kb on - strand, within GFF2774at 477.046 kb on + strand, within GFF2774at 477.046 kb on + strand, within GFF2774at 477.046 kb on + strand, within GFF2774at 477.046 kb on + strand, within GFF2774at 477.047 kb on - strand, within GFF2774at 477.047 kb on - strand, within GFF2774at 477.069 kb on + strand, within GFF2774at 477.069 kb on + strand, within GFF2774at 477.070 kb on - strand, within GFF2774at 477.070 kb on - strand, within GFF2774at 477.085 kb on + strand, within GFF2774at 477.086 kb on - strand, within GFF2774at 477.086 kb on - strand, within GFF2774at 477.086 kb on - strand, within GFF2774at 477.166 kb on + strand, within GFF2774at 477.166 kb on + strand, within GFF2774at 477.166 kb on + strand, within GFF2774at 477.166 kb on + strand, within GFF2774at 477.167 kb on - strand, within GFF2774at 477.167 kb on - strand, within GFF2774at 477.167 kb on - strand, within GFF2774at 477.286 kb on + strand, within GFF2774at 477.286 kb on + strand, within GFF2774at 477.286 kb on + strand, within GFF2774at 477.286 kb on + strand, within GFF2774at 477.287 kb on - strand, within GFF2774at 477.287 kb on - strand, within GFF2774at 477.287 kb on - strand, within GFF2774at 477.287 kb on - strand, within GFF2774

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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474,452 - GFF2772 0.12 -1.2
474,452 - GFF2772 0.12 -0.4
474,452 - GFF2772 0.12 -0.1
474,452 - GFF2772 0.12 +0.2
474,452 - GFF2772 0.12 -0.3
474,517 + GFF2772 0.19 -0.6
474,517 + GFF2772 0.19 +0.0
474,518 - GFF2772 0.19 +0.0
474,518 - GFF2772 0.19 -0.3
474,661 + GFF2772 0.36 -0.6
474,661 + GFF2772 0.36 -0.3
474,661 + GFF2772 0.36 -1.1
474,662 - GFF2772 0.36 -0.4
474,662 - GFF2772 0.36 -0.2
474,724 + GFF2772 0.43 -0.3
474,724 + GFF2772 0.43 +0.4
474,725 - GFF2772 0.43 +0.2
474,725 - GFF2772 0.43 -1.4
474,725 - GFF2772 0.43 +0.5
474,739 + GFF2772 0.44 +0.0
474,739 + GFF2772 0.44 -0.6
474,739 + GFF2772 0.44 -0.2
474,740 - GFF2772 0.44 +0.2
474,755 - GFF2772 0.46 -0.2
474,755 - GFF2772 0.46 +0.2
474,760 + GFF2772 0.47 +0.4
474,778 + GFF2772 0.49 +0.4
474,778 + GFF2772 0.49 +0.9
474,779 - GFF2772 0.49 +0.9
474,932 - GFF2772 0.66 -1.2
475,255 + +0.2
475,256 - -0.1
475,266 + +0.1
475,267 - -0.8
475,309 + +0.2
475,309 + -0.4
475,417 + +0.1
475,417 + -0.2
475,417 + +0.6
475,418 - -0.0
475,642 - GFF2773 0.25 +0.3
475,987 - GFF2773 0.64 +0.6
476,122 - GFF2773 0.79 +0.5
476,122 - GFF2773 0.79 -0.1
476,232 + -0.4
476,232 + -0.0
476,233 - +0.4
476,233 - -0.8
476,295 + +0.2
476,296 - +0.0
476,296 - -0.2
476,296 - +0.5
476,350 + +0.2
476,351 - -0.6
476,351 - +0.2
476,366 - -1.4
476,366 - -0.1
476,382 - +0.8
476,443 + -0.6
476,444 - +0.6
476,444 - -1.4
476,455 + -0.3
476,455 + -0.2
476,583 + GFF2774 0.16 -0.0
476,584 - GFF2774 0.16 -1.2
476,584 - GFF2774 0.16 +0.6
476,584 - GFF2774 0.16 -0.6
476,714 - GFF2774 0.24 -0.1
476,714 - GFF2774 0.24 +0.1
476,742 + GFF2774 0.26 -0.2
476,742 + GFF2774 0.26 +0.3
476,742 + GFF2774 0.26 +0.3
476,742 + GFF2774 0.26 -0.9
476,742 + GFF2774 0.26 -0.6
476,742 + GFF2774 0.26 +0.1
476,743 - GFF2774 0.26 +0.1
476,743 - GFF2774 0.26 +0.3
477,040 + GFF2774 0.46 -0.2
477,040 + GFF2774 0.46 +0.5
477,040 + GFF2774 0.46 -0.5
477,041 - GFF2774 0.46 -0.7
477,041 - GFF2774 0.46 -0.9
477,041 - GFF2774 0.46 +0.9
477,041 - GFF2774 0.46 -0.2
477,041 - GFF2774 0.46 +0.3
477,041 - GFF2774 0.46 -0.0
477,041 - GFF2774 0.46 +0.4
477,046 + GFF2774 0.47 -0.5
477,046 + GFF2774 0.47 +0.0
477,046 + GFF2774 0.47 -0.3
477,046 + GFF2774 0.47 +0.8
477,047 - GFF2774 0.47 -0.1
477,047 - GFF2774 0.47 +0.2
477,069 + GFF2774 0.48 -0.2
477,069 + GFF2774 0.48 +0.2
477,070 - GFF2774 0.48 +0.2
477,070 - GFF2774 0.48 +0.1
477,085 + GFF2774 0.49 -0.1
477,086 - GFF2774 0.49 +0.3
477,086 - GFF2774 0.49 -0.4
477,086 - GFF2774 0.49 +0.1
477,166 + GFF2774 0.55 +0.0
477,166 + GFF2774 0.55 -0.3
477,166 + GFF2774 0.55 -0.5
477,166 + GFF2774 0.55 -1.0
477,167 - GFF2774 0.55 -0.7
477,167 - GFF2774 0.55 -0.9
477,167 - GFF2774 0.55 +0.9
477,286 + GFF2774 0.63 +0.0
477,286 + GFF2774 0.63 -0.4
477,286 + GFF2774 0.63 +0.7
477,286 + GFF2774 0.63 +0.6
477,287 - GFF2774 0.63 -0.6
477,287 - GFF2774 0.63 -0.1
477,287 - GFF2774 0.63 -0.5
477,287 - GFF2774 0.63 -0.2

Or see this region's nucleotide sequence