Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2764 and GFF2765 are separated by 314 nucleotides GFF2765 and GFF2766 are separated by 122 nucleotides
GFF2764 - HTH-type transcriptional regulator McbR, at 465,017 to 465,772
GFF2764
GFF2765 - hypothetical protein, at 466,087 to 467,295
GFF2765
GFF2766 - 3-methylitaconate isomerase, at 467,418 to 468,533
GFF2766
Position (kb) 466
467
468 Strain fitness (log2 ratio) -1
0
1 at 465.147 kb on - strand, within GFF2764 at 465.430 kb on + strand, within GFF2764 at 465.449 kb on + strand, within GFF2764 at 465.449 kb on + strand, within GFF2764 at 465.542 kb on + strand, within GFF2764 at 465.542 kb on + strand, within GFF2764 at 465.543 kb on - strand, within GFF2764 at 465.543 kb on - strand, within GFF2764 at 465.546 kb on - strand, within GFF2764 at 465.846 kb on - strand at 465.956 kb on + strand at 465.956 kb on + strand at 465.957 kb on - strand at 465.957 kb on - strand at 466.073 kb on + strand at 466.074 kb on - strand at 466.074 kb on - strand at 466.074 kb on - strand at 466.175 kb on + strand at 466.176 kb on - strand at 466.360 kb on + strand, within GFF2765 at 466.360 kb on + strand, within GFF2765 at 466.360 kb on + strand, within GFF2765 at 466.361 kb on - strand, within GFF2765 at 466.592 kb on - strand, within GFF2765 at 466.592 kb on - strand, within GFF2765 at 466.592 kb on - strand, within GFF2765 at 466.626 kb on + strand, within GFF2765 at 466.626 kb on + strand, within GFF2765 at 466.627 kb on - strand, within GFF2765 at 466.627 kb on - strand, within GFF2765 at 466.627 kb on - strand, within GFF2765 at 466.921 kb on + strand, within GFF2765 at 466.922 kb on - strand, within GFF2765 at 466.922 kb on - strand, within GFF2765 at 466.922 kb on - strand, within GFF2765 at 466.922 kb on - strand, within GFF2765 at 466.922 kb on - strand, within GFF2765 at 466.922 kb on - strand, within GFF2765 at 467.011 kb on + strand, within GFF2765 at 467.012 kb on - strand, within GFF2765 at 467.012 kb on - strand, within GFF2765 at 467.012 kb on - strand, within GFF2765 at 467.012 kb on - strand, within GFF2765 at 467.012 kb on - strand, within GFF2765 at 467.029 kb on + strand, within GFF2765 at 467.029 kb on + strand, within GFF2765 at 467.030 kb on - strand, within GFF2765 at 467.030 kb on - strand, within GFF2765 at 467.056 kb on - strand, within GFF2765 at 467.164 kb on + strand, within GFF2765 at 467.378 kb on + strand at 467.378 kb on + strand at 467.378 kb on + strand at 467.379 kb on - strand at 467.526 kb on + strand at 467.622 kb on + strand, within GFF2766 at 467.622 kb on + strand, within GFF2766 at 467.622 kb on + strand, within GFF2766 at 467.623 kb on - strand, within GFF2766 at 467.623 kb on - strand, within GFF2766 at 467.623 kb on - strand, within GFF2766 at 467.623 kb on - strand, within GFF2766 at 467.664 kb on + strand, within GFF2766 at 467.665 kb on - strand, within GFF2766 at 467.762 kb on + strand, within GFF2766 at 467.763 kb on - strand, within GFF2766 at 467.763 kb on - strand, within GFF2766 at 468.148 kb on + strand, within GFF2766 at 468.229 kb on - strand, within GFF2766
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 465,147 - GFF2764 0.17 -1.0 465,430 + GFF2764 0.55 +0.2 465,449 + GFF2764 0.57 +0.4 465,449 + GFF2764 0.57 -0.2 465,542 + GFF2764 0.69 +0.0 465,542 + GFF2764 0.69 +0.4 465,543 - GFF2764 0.70 -0.2 465,543 - GFF2764 0.70 -1.2 465,546 - GFF2764 0.70 -0.6 465,846 - -0.3 465,956 + -0.2 465,956 + +0.0 465,957 - +0.4 465,957 - -0.8 466,073 + -1.0 466,074 - +1.1 466,074 - +0.9 466,074 - -0.5 466,175 + -0.1 466,176 - -0.3 466,360 + GFF2765 0.23 +0.4 466,360 + GFF2765 0.23 -0.9 466,360 + GFF2765 0.23 -0.0 466,361 - GFF2765 0.23 -0.7 466,592 - GFF2765 0.42 +0.1 466,592 - GFF2765 0.42 -0.2 466,592 - GFF2765 0.42 +0.2 466,626 + GFF2765 0.45 +0.8 466,626 + GFF2765 0.45 +0.4 466,627 - GFF2765 0.45 -0.4 466,627 - GFF2765 0.45 -1.4 466,627 - GFF2765 0.45 -0.9 466,921 + GFF2765 0.69 -0.2 466,922 - GFF2765 0.69 -0.9 466,922 - GFF2765 0.69 +1.2 466,922 - GFF2765 0.69 +1.7 466,922 - GFF2765 0.69 -0.4 466,922 - GFF2765 0.69 -0.2 466,922 - GFF2765 0.69 -1.0 467,011 + GFF2765 0.76 +0.5 467,012 - GFF2765 0.77 +0.2 467,012 - GFF2765 0.77 -1.0 467,012 - GFF2765 0.77 +0.4 467,012 - GFF2765 0.77 +0.4 467,012 - GFF2765 0.77 -0.0 467,029 + GFF2765 0.78 +0.2 467,029 + GFF2765 0.78 -0.2 467,030 - GFF2765 0.78 +0.3 467,030 - GFF2765 0.78 -0.3 467,056 - GFF2765 0.80 +0.1 467,164 + GFF2765 0.89 -0.1 467,378 + +0.2 467,378 + +0.7 467,378 + -0.3 467,379 - +0.7 467,526 + +0.8 467,622 + GFF2766 0.18 +0.1 467,622 + GFF2766 0.18 -1.0 467,622 + GFF2766 0.18 -1.0 467,623 - GFF2766 0.18 -1.2 467,623 - GFF2766 0.18 -0.6 467,623 - GFF2766 0.18 -0.4 467,623 - GFF2766 0.18 +0.2 467,664 + GFF2766 0.22 +0.3 467,665 - GFF2766 0.22 -0.0 467,762 + GFF2766 0.31 -1.0 467,763 - GFF2766 0.31 -0.2 467,763 - GFF2766 0.31 -1.2 468,148 + GFF2766 0.65 -0.6 468,229 - GFF2766 0.73 -0.2
Or see this region's nucleotide sequence