Strain Fitness in Xanthobacter sp. DMC5 around GFF2747

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2745 and GFF2746 are separated by 317 nucleotidesGFF2746 and GFF2747 are separated by 4 nucleotidesGFF2747 and GFF2748 are separated by 228 nucleotides GFF2745 - Iron(3+)-hydroxamate import ATP-binding protein FhuC, at 444,679 to 445,431 GFF2745 GFF2746 - hypothetical protein, at 445,749 to 446,420 GFF2746 GFF2747 - Para-nitrobenzyl esterase, at 446,425 to 447,954 GFF2747 GFF2748 - Metal-pseudopaline receptor CntO, at 448,183 to 450,378 GFF2748 Position (kb) 446 447 448Strain fitness (log2 ratio) -1 0 1at 445.537 kb on + strandat 445.537 kb on + strandat 445.537 kb on + strandat 445.537 kb on + strandat 445.538 kb on - strandat 445.538 kb on - strandat 445.538 kb on - strandat 445.538 kb on - strandat 445.538 kb on - strandat 445.538 kb on - strandat 445.612 kb on - strandat 445.662 kb on - strandat 445.718 kb on - strandat 445.718 kb on - strandat 445.735 kb on + strandat 445.735 kb on + strandat 445.735 kb on + strandat 445.736 kb on - strandat 445.736 kb on - strandat 445.736 kb on - strandat 445.842 kb on + strand, within GFF2746at 445.858 kb on + strand, within GFF2746at 445.858 kb on + strand, within GFF2746at 445.858 kb on + strand, within GFF2746at 445.859 kb on - strand, within GFF2746at 445.859 kb on - strand, within GFF2746at 445.902 kb on + strand, within GFF2746at 445.903 kb on - strand, within GFF2746at 445.903 kb on - strand, within GFF2746at 445.953 kb on + strand, within GFF2746at 445.953 kb on + strand, within GFF2746at 445.953 kb on + strand, within GFF2746at 445.953 kb on + strand, within GFF2746at 445.953 kb on + strand, within GFF2746at 446.050 kb on + strand, within GFF2746at 446.051 kb on - strand, within GFF2746at 446.051 kb on - strand, within GFF2746at 446.071 kb on + strand, within GFF2746at 446.071 kb on + strand, within GFF2746at 446.071 kb on + strand, within GFF2746at 446.167 kb on - strand, within GFF2746at 446.167 kb on - strand, within GFF2746at 446.318 kb on - strand, within GFF2746at 446.508 kb on + strandat 446.509 kb on - strandat 446.516 kb on + strandat 446.516 kb on + strandat 446.516 kb on + strandat 446.520 kb on + strandat 446.521 kb on - strandat 446.521 kb on - strandat 446.521 kb on - strandat 446.521 kb on - strandat 446.528 kb on - strandat 446.604 kb on + strand, within GFF2747at 446.604 kb on + strand, within GFF2747at 446.605 kb on - strand, within GFF2747at 446.605 kb on - strand, within GFF2747at 446.651 kb on + strand, within GFF2747at 446.651 kb on + strand, within GFF2747at 446.651 kb on + strand, within GFF2747at 446.651 kb on + strand, within GFF2747at 446.651 kb on + strand, within GFF2747at 446.652 kb on - strand, within GFF2747at 446.652 kb on - strand, within GFF2747at 446.652 kb on - strand, within GFF2747at 446.652 kb on - strand, within GFF2747at 446.652 kb on - strand, within GFF2747at 446.652 kb on - strand, within GFF2747at 446.758 kb on + strand, within GFF2747at 446.758 kb on + strand, within GFF2747at 446.759 kb on - strand, within GFF2747at 446.801 kb on - strand, within GFF2747at 446.854 kb on + strand, within GFF2747at 446.855 kb on - strand, within GFF2747at 446.984 kb on + strand, within GFF2747at 447.121 kb on + strand, within GFF2747at 447.121 kb on + strand, within GFF2747at 447.122 kb on - strand, within GFF2747at 447.122 kb on - strand, within GFF2747at 447.122 kb on - strand, within GFF2747at 447.122 kb on - strand, within GFF2747at 447.165 kb on + strand, within GFF2747at 447.166 kb on - strand, within GFF2747at 447.166 kb on - strand, within GFF2747at 447.262 kb on + strand, within GFF2747at 447.263 kb on - strand, within GFF2747at 447.283 kb on + strand, within GFF2747at 447.283 kb on + strand, within GFF2747at 447.284 kb on - strand, within GFF2747at 447.520 kb on + strand, within GFF2747at 447.569 kb on + strand, within GFF2747at 447.569 kb on + strand, within GFF2747at 447.569 kb on + strand, within GFF2747at 447.634 kb on + strand, within GFF2747at 447.646 kb on + strand, within GFF2747at 447.647 kb on - strand, within GFF2747at 447.647 kb on - strand, within GFF2747at 447.668 kb on + strand, within GFF2747at 447.668 kb on + strand, within GFF2747at 447.711 kb on - strand, within GFF2747at 447.757 kb on + strand, within GFF2747at 447.758 kb on - strand, within GFF2747at 447.807 kb on - strandat 447.825 kb on + strandat 447.825 kb on + strandat 447.825 kb on + strandat 447.826 kb on - strandat 447.826 kb on - strandat 447.844 kb on + strandat 447.844 kb on + strandat 447.844 kb on + strandat 447.845 kb on - strandat 448.010 kb on - strandat 448.111 kb on + strandat 448.111 kb on + strandat 448.165 kb on + strandat 448.166 kb on - strandat 448.264 kb on + strandat 448.264 kb on + strandat 448.264 kb on + strandat 448.265 kb on - strandat 448.265 kb on - strandat 448.268 kb on + strandat 448.268 kb on + strandat 448.268 kb on + strandat 448.269 kb on - strandat 448.269 kb on - strandat 448.269 kb on - strandat 448.269 kb on - strandat 448.271 kb on + strandat 448.271 kb on + strandat 448.271 kb on + strandat 448.271 kb on + strandat 448.272 kb on - strandat 448.352 kb on + strandat 448.353 kb on - strandat 448.353 kb on - strandat 448.353 kb on - strandat 448.379 kb on + strandat 448.380 kb on - strandat 448.380 kb on - strandat 448.380 kb on - strandat 448.380 kb on - strandat 448.487 kb on + strand, within GFF2748at 448.544 kb on + strand, within GFF2748at 448.544 kb on + strand, within GFF2748at 448.545 kb on - strand, within GFF2748at 448.545 kb on - strand, within GFF2748at 448.545 kb on - strand, within GFF2748at 448.545 kb on - strand, within GFF2748at 448.577 kb on + strand, within GFF2748at 448.583 kb on + strand, within GFF2748at 448.584 kb on - strand, within GFF2748at 448.700 kb on + strand, within GFF2748at 448.700 kb on + strand, within GFF2748at 448.700 kb on + strand, within GFF2748at 448.700 kb on + strand, within GFF2748at 448.700 kb on + strand, within GFF2748at 448.701 kb on - strand, within GFF2748at 448.701 kb on - strand, within GFF2748at 448.701 kb on - strand, within GFF2748at 448.785 kb on - strand, within GFF2748at 448.833 kb on - strand, within GFF2748at 448.859 kb on + strand, within GFF2748at 448.860 kb on - strand, within GFF2748at 448.868 kb on + strand, within GFF2748at 448.868 kb on + strand, within GFF2748at 448.868 kb on + strand, within GFF2748at 448.868 kb on + strand, within GFF2748at 448.869 kb on - strand, within GFF2748at 448.895 kb on + strand, within GFF2748at 448.895 kb on + strand, within GFF2748at 448.895 kb on + strand, within GFF2748at 448.896 kb on - strand, within GFF2748at 448.941 kb on + strand, within GFF2748at 448.941 kb on + strand, within GFF2748at 448.941 kb on + strand, within GFF2748

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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445,537 + -1.1
445,537 + +0.0
445,537 + -0.6
445,537 + -0.5
445,538 - -1.0
445,538 - -1.6
445,538 - +0.2
445,538 - +0.3
445,538 - +0.1
445,538 - +0.3
445,612 - -0.4
445,662 - -0.7
445,718 - -0.0
445,718 - +0.4
445,735 + -1.1
445,735 + -0.2
445,735 + -0.9
445,736 - +0.3
445,736 - -0.1
445,736 - +0.7
445,842 + GFF2746 0.14 -0.8
445,858 + GFF2746 0.16 +0.4
445,858 + GFF2746 0.16 +0.1
445,858 + GFF2746 0.16 +0.0
445,859 - GFF2746 0.16 -1.6
445,859 - GFF2746 0.16 -0.4
445,902 + GFF2746 0.23 -0.7
445,903 - GFF2746 0.23 +1.0
445,903 - GFF2746 0.23 -0.6
445,953 + GFF2746 0.30 -0.6
445,953 + GFF2746 0.30 -0.6
445,953 + GFF2746 0.30 -1.3
445,953 + GFF2746 0.30 -0.7
445,953 + GFF2746 0.30 -0.0
446,050 + GFF2746 0.45 -0.8
446,051 - GFF2746 0.45 -0.6
446,051 - GFF2746 0.45 +0.4
446,071 + GFF2746 0.48 -0.2
446,071 + GFF2746 0.48 +0.3
446,071 + GFF2746 0.48 -0.2
446,167 - GFF2746 0.62 -0.4
446,167 - GFF2746 0.62 -0.4
446,318 - GFF2746 0.85 -0.5
446,508 + -0.2
446,509 - +0.0
446,516 + -0.0
446,516 + -1.6
446,516 + +0.0
446,520 + +0.4
446,521 - -1.3
446,521 - -0.0
446,521 - -0.8
446,521 - +0.2
446,528 - +0.5
446,604 + GFF2747 0.12 -0.2
446,604 + GFF2747 0.12 +0.6
446,605 - GFF2747 0.12 -0.1
446,605 - GFF2747 0.12 +1.3
446,651 + GFF2747 0.15 +1.5
446,651 + GFF2747 0.15 -0.6
446,651 + GFF2747 0.15 +0.2
446,651 + GFF2747 0.15 +0.2
446,651 + GFF2747 0.15 -0.2
446,652 - GFF2747 0.15 -0.6
446,652 - GFF2747 0.15 -0.0
446,652 - GFF2747 0.15 -1.3
446,652 - GFF2747 0.15 +1.5
446,652 - GFF2747 0.15 +0.2
446,652 - GFF2747 0.15 +0.2
446,758 + GFF2747 0.22 +0.2
446,758 + GFF2747 0.22 +0.7
446,759 - GFF2747 0.22 +0.5
446,801 - GFF2747 0.25 -0.8
446,854 + GFF2747 0.28 -0.6
446,855 - GFF2747 0.28 +0.4
446,984 + GFF2747 0.37 +0.1
447,121 + GFF2747 0.45 -0.1
447,121 + GFF2747 0.45 +0.9
447,122 - GFF2747 0.46 +0.4
447,122 - GFF2747 0.46 +0.7
447,122 - GFF2747 0.46 -0.2
447,122 - GFF2747 0.46 -0.3
447,165 + GFF2747 0.48 +0.6
447,166 - GFF2747 0.48 +1.2
447,166 - GFF2747 0.48 -0.6
447,262 + GFF2747 0.55 -0.9
447,263 - GFF2747 0.55 +0.2
447,283 + GFF2747 0.56 +0.1
447,283 + GFF2747 0.56 -0.2
447,284 - GFF2747 0.56 -0.2
447,520 + GFF2747 0.72 -0.1
447,569 + GFF2747 0.75 -0.4
447,569 + GFF2747 0.75 -0.2
447,569 + GFF2747 0.75 -0.4
447,634 + GFF2747 0.79 +0.1
447,646 + GFF2747 0.80 -0.0
447,647 - GFF2747 0.80 +0.5
447,647 - GFF2747 0.80 +0.7
447,668 + GFF2747 0.81 +0.5
447,668 + GFF2747 0.81 -0.4
447,711 - GFF2747 0.84 +0.7
447,757 + GFF2747 0.87 +0.1
447,758 - GFF2747 0.87 +0.1
447,807 - +0.4
447,825 + +0.6
447,825 + +0.3
447,825 + -0.8
447,826 - -0.4
447,826 - +0.5
447,844 + -0.4
447,844 + +0.2
447,844 + +0.4
447,845 - -0.2
448,010 - -0.1
448,111 + -0.5
448,111 + +0.3
448,165 + -0.5
448,166 - -0.5
448,264 + -0.3
448,264 + -0.5
448,264 + -0.4
448,265 - +0.4
448,265 - +0.1
448,268 + -0.5
448,268 + +0.2
448,268 + -0.0
448,269 - -0.3
448,269 - +0.2
448,269 - -0.7
448,269 - +0.7
448,271 + -0.5
448,271 + -0.8
448,271 + -0.4
448,271 + -0.0
448,272 - +0.0
448,352 + +1.4
448,353 - -0.9
448,353 - +1.1
448,353 - +0.7
448,379 + +0.3
448,380 - +0.6
448,380 - -0.1
448,380 - -0.0
448,380 - +1.0
448,487 + GFF2748 0.14 -0.3
448,544 + GFF2748 0.16 +0.2
448,544 + GFF2748 0.16 -0.8
448,545 - GFF2748 0.16 +0.1
448,545 - GFF2748 0.16 -0.3
448,545 - GFF2748 0.16 -0.3
448,545 - GFF2748 0.16 +1.6
448,577 + GFF2748 0.18 -0.7
448,583 + GFF2748 0.18 -0.7
448,584 - GFF2748 0.18 -1.0
448,700 + GFF2748 0.24 -0.3
448,700 + GFF2748 0.24 +0.0
448,700 + GFF2748 0.24 -1.4
448,700 + GFF2748 0.24 +0.2
448,700 + GFF2748 0.24 +0.1
448,701 - GFF2748 0.24 +0.3
448,701 - GFF2748 0.24 +1.6
448,701 - GFF2748 0.24 +0.6
448,785 - GFF2748 0.27 -0.1
448,833 - GFF2748 0.30 +0.0
448,859 + GFF2748 0.31 -0.8
448,860 - GFF2748 0.31 -0.1
448,868 + GFF2748 0.31 +0.4
448,868 + GFF2748 0.31 +0.6
448,868 + GFF2748 0.31 -0.7
448,868 + GFF2748 0.31 -1.1
448,869 - GFF2748 0.31 +0.2
448,895 + GFF2748 0.32 +1.4
448,895 + GFF2748 0.32 -0.1
448,895 + GFF2748 0.32 -0.6
448,896 - GFF2748 0.32 +1.4
448,941 + GFF2748 0.35 -0.6
448,941 + GFF2748 0.35 -0.2
448,941 + GFF2748 0.35 +0.6

Or see this region's nucleotide sequence