Strain Fitness in Xanthobacter sp. DMC5 around GFF2741

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2740 and GFF2741 are separated by 267 nucleotidesGFF2741 and GFF2742 overlap by 7 nucleotides GFF2740 - Nucleoid occlusion factor SlmA, at 438,227 to 438,991 GFF2740 GFF2741 - Ferrichrome outer membrane transporter/phage receptor, at 439,259 to 441,319 GFF2741 GFF2742 - hypothetical protein, at 441,313 to 442,479 GFF2742 Position (kb) 439 440 441 442Strain fitness (log2 ratio) -2 -1 0 1at 438.300 kb on + strandat 438.300 kb on + strandat 438.301 kb on - strandat 438.378 kb on + strand, within GFF2740at 438.378 kb on + strand, within GFF2740at 438.591 kb on + strand, within GFF2740at 438.591 kb on + strand, within GFF2740at 438.591 kb on + strand, within GFF2740at 438.592 kb on - strand, within GFF2740at 438.592 kb on - strand, within GFF2740at 438.708 kb on + strand, within GFF2740at 438.708 kb on + strand, within GFF2740at 438.717 kb on + strand, within GFF2740at 438.717 kb on + strand, within GFF2740at 438.717 kb on + strand, within GFF2740at 438.718 kb on - strand, within GFF2740at 438.983 kb on + strandat 439.220 kb on - strandat 439.389 kb on + strandat 439.389 kb on + strandat 439.389 kb on + strandat 439.389 kb on + strandat 439.390 kb on - strandat 439.390 kb on - strandat 439.393 kb on + strandat 439.448 kb on + strandat 439.448 kb on + strandat 439.448 kb on + strandat 439.448 kb on + strandat 439.448 kb on + strandat 439.449 kb on - strandat 439.502 kb on - strand, within GFF2741at 439.607 kb on + strand, within GFF2741at 439.655 kb on + strand, within GFF2741at 439.655 kb on + strand, within GFF2741at 439.687 kb on + strand, within GFF2741at 439.687 kb on + strand, within GFF2741at 439.687 kb on + strand, within GFF2741at 439.687 kb on + strand, within GFF2741at 439.688 kb on - strand, within GFF2741at 439.719 kb on - strand, within GFF2741at 439.719 kb on - strand, within GFF2741at 439.749 kb on - strand, within GFF2741at 439.749 kb on - strand, within GFF2741at 439.811 kb on + strand, within GFF2741at 439.811 kb on + strand, within GFF2741at 439.811 kb on + strand, within GFF2741at 439.811 kb on + strand, within GFF2741at 439.812 kb on - strand, within GFF2741at 439.812 kb on - strand, within GFF2741at 439.812 kb on - strand, within GFF2741at 439.850 kb on + strand, within GFF2741at 439.850 kb on + strand, within GFF2741at 439.850 kb on + strand, within GFF2741at 439.850 kb on + strand, within GFF2741at 439.851 kb on - strand, within GFF2741at 439.851 kb on - strand, within GFF2741at 439.851 kb on - strand, within GFF2741at 439.965 kb on - strand, within GFF2741at 440.047 kb on + strand, within GFF2741at 440.048 kb on - strand, within GFF2741at 440.060 kb on + strand, within GFF2741at 440.061 kb on - strand, within GFF2741at 440.061 kb on - strand, within GFF2741at 440.061 kb on - strand, within GFF2741at 440.063 kb on - strand, within GFF2741at 440.063 kb on - strand, within GFF2741at 440.141 kb on + strand, within GFF2741at 440.142 kb on - strand, within GFF2741at 440.142 kb on - strand, within GFF2741at 440.142 kb on - strand, within GFF2741at 440.142 kb on - strand, within GFF2741at 440.324 kb on + strand, within GFF2741at 440.325 kb on - strand, within GFF2741at 440.351 kb on + strand, within GFF2741at 440.352 kb on - strand, within GFF2741at 440.396 kb on + strand, within GFF2741at 440.396 kb on + strand, within GFF2741at 440.396 kb on + strand, within GFF2741at 440.396 kb on + strand, within GFF2741at 440.397 kb on - strand, within GFF2741at 440.397 kb on - strand, within GFF2741at 440.465 kb on + strand, within GFF2741at 440.465 kb on + strand, within GFF2741at 440.465 kb on + strand, within GFF2741at 440.466 kb on - strand, within GFF2741at 440.466 kb on - strand, within GFF2741at 440.466 kb on - strand, within GFF2741at 440.549 kb on + strand, within GFF2741at 440.550 kb on - strand, within GFF2741at 440.550 kb on - strand, within GFF2741at 440.598 kb on - strand, within GFF2741at 440.598 kb on - strand, within GFF2741at 440.598 kb on - strand, within GFF2741at 440.598 kb on - strand, within GFF2741at 440.598 kb on - strand, within GFF2741at 440.615 kb on + strand, within GFF2741at 440.615 kb on + strand, within GFF2741at 440.615 kb on + strand, within GFF2741at 440.615 kb on + strand, within GFF2741at 440.616 kb on - strand, within GFF2741at 440.616 kb on - strand, within GFF2741at 440.616 kb on - strand, within GFF2741at 440.616 kb on - strand, within GFF2741at 440.616 kb on - strand, within GFF2741at 440.651 kb on + strand, within GFF2741at 440.652 kb on - strand, within GFF2741at 440.685 kb on - strand, within GFF2741at 440.744 kb on + strand, within GFF2741at 440.745 kb on - strand, within GFF2741at 440.745 kb on - strand, within GFF2741at 440.753 kb on - strand, within GFF2741at 440.756 kb on + strand, within GFF2741at 440.812 kb on + strand, within GFF2741at 440.812 kb on + strand, within GFF2741at 440.812 kb on + strand, within GFF2741at 440.813 kb on - strand, within GFF2741at 440.970 kb on - strand, within GFF2741at 440.970 kb on - strand, within GFF2741at 440.970 kb on - strand, within GFF2741at 440.970 kb on - strand, within GFF2741at 440.977 kb on + strand, within GFF2741at 440.977 kb on + strand, within GFF2741at 440.977 kb on + strand, within GFF2741at 440.978 kb on - strand, within GFF2741at 440.978 kb on - strand, within GFF2741at 441.002 kb on + strand, within GFF2741at 441.026 kb on + strand, within GFF2741at 441.026 kb on + strand, within GFF2741at 441.095 kb on + strand, within GFF2741at 441.096 kb on - strand, within GFF2741at 441.158 kb on + strandat 441.236 kb on + strandat 441.237 kb on - strandat 441.240 kb on - strandat 441.254 kb on + strandat 441.254 kb on + strandat 441.255 kb on - strandat 441.263 kb on + strandat 441.263 kb on + strandat 441.263 kb on + strandat 441.263 kb on + strandat 441.263 kb on + strandat 441.263 kb on + strandat 441.264 kb on - strandat 441.264 kb on - strandat 441.272 kb on + strandat 441.272 kb on + strandat 441.273 kb on - strandat 441.518 kb on + strand, within GFF2742at 441.518 kb on + strand, within GFF2742at 441.518 kb on + strand, within GFF2742at 441.519 kb on - strand, within GFF2742at 441.519 kb on - strand, within GFF2742at 441.519 kb on - strand, within GFF2742at 441.519 kb on - strand, within GFF2742at 441.584 kb on + strand, within GFF2742at 441.584 kb on + strand, within GFF2742at 441.584 kb on + strand, within GFF2742at 441.584 kb on + strand, within GFF2742at 441.584 kb on + strand, within GFF2742at 441.584 kb on + strand, within GFF2742at 441.584 kb on + strand, within GFF2742at 441.585 kb on - strand, within GFF2742at 441.585 kb on - strand, within GFF2742at 441.585 kb on - strand, within GFF2742at 441.964 kb on + strand, within GFF2742at 441.985 kb on + strand, within GFF2742at 441.985 kb on + strand, within GFF2742at 441.986 kb on - strand, within GFF2742at 441.986 kb on - strand, within GFF2742at 441.986 kb on - strand, within GFF2742at 441.986 kb on - strand, within GFF2742at 442.129 kb on + strand, within GFF2742at 442.130 kb on - strand, within GFF2742at 442.130 kb on - strand, within GFF2742at 442.247 kb on + strand, within GFF2742

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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438,300 + -0.1
438,300 + -0.6
438,301 - +0.3
438,378 + GFF2740 0.20 +0.5
438,378 + GFF2740 0.20 -1.1
438,591 + GFF2740 0.48 -0.6
438,591 + GFF2740 0.48 -0.0
438,591 + GFF2740 0.48 -0.1
438,592 - GFF2740 0.48 -1.9
438,592 - GFF2740 0.48 -0.1
438,708 + GFF2740 0.63 +0.2
438,708 + GFF2740 0.63 +0.5
438,717 + GFF2740 0.64 +1.0
438,717 + GFF2740 0.64 +0.4
438,717 + GFF2740 0.64 +0.9
438,718 - GFF2740 0.64 +0.3
438,983 + -0.1
439,220 - -1.5
439,389 + -2.0
439,389 + +0.4
439,389 + -0.1
439,389 + -0.6
439,390 - -2.0
439,390 - -0.6
439,393 + +0.1
439,448 + +0.0
439,448 + +0.0
439,448 + -0.1
439,448 + +0.2
439,448 + -0.7
439,449 - -0.1
439,502 - GFF2741 0.12 +0.9
439,607 + GFF2741 0.17 +0.5
439,655 + GFF2741 0.19 +0.5
439,655 + GFF2741 0.19 -0.7
439,687 + GFF2741 0.21 +0.1
439,687 + GFF2741 0.21 +0.7
439,687 + GFF2741 0.21 -0.2
439,687 + GFF2741 0.21 +0.6
439,688 - GFF2741 0.21 -0.6
439,719 - GFF2741 0.22 -0.0
439,719 - GFF2741 0.22 -0.3
439,749 - GFF2741 0.24 +0.1
439,749 - GFF2741 0.24 +1.0
439,811 + GFF2741 0.27 -0.0
439,811 + GFF2741 0.27 -1.1
439,811 + GFF2741 0.27 -0.8
439,811 + GFF2741 0.27 +1.1
439,812 - GFF2741 0.27 -0.7
439,812 - GFF2741 0.27 -0.2
439,812 - GFF2741 0.27 -0.6
439,850 + GFF2741 0.29 -0.8
439,850 + GFF2741 0.29 +0.0
439,850 + GFF2741 0.29 -0.2
439,850 + GFF2741 0.29 -0.1
439,851 - GFF2741 0.29 -0.1
439,851 - GFF2741 0.29 +0.3
439,851 - GFF2741 0.29 -0.0
439,965 - GFF2741 0.34 +0.3
440,047 + GFF2741 0.38 -1.2
440,048 - GFF2741 0.38 -0.1
440,060 + GFF2741 0.39 +0.7
440,061 - GFF2741 0.39 -0.2
440,061 - GFF2741 0.39 -0.1
440,061 - GFF2741 0.39 +0.6
440,063 - GFF2741 0.39 -0.5
440,063 - GFF2741 0.39 -0.0
440,141 + GFF2741 0.43 -0.2
440,142 - GFF2741 0.43 -0.5
440,142 - GFF2741 0.43 -0.2
440,142 - GFF2741 0.43 -0.7
440,142 - GFF2741 0.43 +0.2
440,324 + GFF2741 0.52 -0.7
440,325 - GFF2741 0.52 +0.6
440,351 + GFF2741 0.53 +0.3
440,352 - GFF2741 0.53 +0.2
440,396 + GFF2741 0.55 -0.6
440,396 + GFF2741 0.55 -0.4
440,396 + GFF2741 0.55 -0.7
440,396 + GFF2741 0.55 -1.7
440,397 - GFF2741 0.55 -0.7
440,397 - GFF2741 0.55 +0.2
440,465 + GFF2741 0.59 -0.1
440,465 + GFF2741 0.59 -0.8
440,465 + GFF2741 0.59 +0.2
440,466 - GFF2741 0.59 -0.1
440,466 - GFF2741 0.59 +0.2
440,466 - GFF2741 0.59 +0.6
440,549 + GFF2741 0.63 +0.1
440,550 - GFF2741 0.63 +0.7
440,550 - GFF2741 0.63 +1.5
440,598 - GFF2741 0.65 -0.2
440,598 - GFF2741 0.65 +0.6
440,598 - GFF2741 0.65 +0.3
440,598 - GFF2741 0.65 -0.1
440,598 - GFF2741 0.65 -0.2
440,615 + GFF2741 0.66 +0.2
440,615 + GFF2741 0.66 +0.3
440,615 + GFF2741 0.66 -0.4
440,615 + GFF2741 0.66 -0.3
440,616 - GFF2741 0.66 -0.5
440,616 - GFF2741 0.66 -0.3
440,616 - GFF2741 0.66 -1.1
440,616 - GFF2741 0.66 +0.7
440,616 - GFF2741 0.66 +0.9
440,651 + GFF2741 0.68 -0.2
440,652 - GFF2741 0.68 +0.9
440,685 - GFF2741 0.69 -0.3
440,744 + GFF2741 0.72 +0.1
440,745 - GFF2741 0.72 +0.3
440,745 - GFF2741 0.72 +0.1
440,753 - GFF2741 0.72 -1.7
440,756 + GFF2741 0.73 +0.2
440,812 + GFF2741 0.75 -0.3
440,812 + GFF2741 0.75 +0.4
440,812 + GFF2741 0.75 -0.1
440,813 - GFF2741 0.75 +0.4
440,970 - GFF2741 0.83 -0.5
440,970 - GFF2741 0.83 +0.4
440,970 - GFF2741 0.83 +0.0
440,970 - GFF2741 0.83 +0.2
440,977 + GFF2741 0.83 -0.2
440,977 + GFF2741 0.83 +0.1
440,977 + GFF2741 0.83 -0.3
440,978 - GFF2741 0.83 -1.1
440,978 - GFF2741 0.83 +0.4
441,002 + GFF2741 0.85 -0.2
441,026 + GFF2741 0.86 -0.3
441,026 + GFF2741 0.86 +0.1
441,095 + GFF2741 0.89 -1.3
441,096 - GFF2741 0.89 +0.6
441,158 + -0.5
441,236 + -0.6
441,237 - -0.2
441,240 - -0.2
441,254 + +0.2
441,254 + +0.3
441,255 - -2.6
441,263 + +1.2
441,263 + -1.7
441,263 + +0.2
441,263 + -0.6
441,263 + -0.5
441,263 + +0.1
441,264 - -0.6
441,264 - +0.5
441,272 + -0.6
441,272 + -0.3
441,273 - -0.4
441,518 + GFF2742 0.18 -0.2
441,518 + GFF2742 0.18 -0.3
441,518 + GFF2742 0.18 +0.0
441,519 - GFF2742 0.18 -1.1
441,519 - GFF2742 0.18 -0.4
441,519 - GFF2742 0.18 +0.1
441,519 - GFF2742 0.18 +0.2
441,584 + GFF2742 0.23 -0.6
441,584 + GFF2742 0.23 +0.4
441,584 + GFF2742 0.23 -0.5
441,584 + GFF2742 0.23 +0.2
441,584 + GFF2742 0.23 +0.3
441,584 + GFF2742 0.23 -0.1
441,584 + GFF2742 0.23 -1.2
441,585 - GFF2742 0.23 -0.3
441,585 - GFF2742 0.23 -0.3
441,585 - GFF2742 0.23 -0.3
441,964 + GFF2742 0.56 -1.4
441,985 + GFF2742 0.58 -0.2
441,985 + GFF2742 0.58 -0.8
441,986 - GFF2742 0.58 +0.2
441,986 - GFF2742 0.58 -0.2
441,986 - GFF2742 0.58 +0.4
441,986 - GFF2742 0.58 +0.0
442,129 + GFF2742 0.70 -1.5
442,130 - GFF2742 0.70 -0.3
442,130 - GFF2742 0.70 -0.5
442,247 + GFF2742 0.80 -0.4

Or see this region's nucleotide sequence