Strain Fitness in Xanthobacter sp. DMC5 around GFF2737

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2736 and GFF2737 are separated by 73 nucleotidesGFF2737 and GFF2738 are separated by 12 nucleotides GFF2736 - Antibiotic efflux pump outer membrane protein ArpC, at 430,573 to 432,108 GFF2736 GFF2737 - Multidrug resistance protein MdtE, at 432,182 to 433,303 GFF2737 GFF2738 - Efflux pump membrane transporter BepE, at 433,316 to 436,399 GFF2738 Position (kb) 432 433 434Strain fitness (log2 ratio) -2 -1 0 1at 431.395 kb on + strand, within GFF2736at 431.395 kb on + strand, within GFF2736at 431.395 kb on + strand, within GFF2736at 431.396 kb on - strand, within GFF2736at 431.396 kb on - strand, within GFF2736at 431.396 kb on - strand, within GFF2736at 431.396 kb on - strand, within GFF2736at 431.605 kb on + strand, within GFF2736at 431.605 kb on + strand, within GFF2736at 431.605 kb on + strand, within GFF2736at 431.606 kb on - strand, within GFF2736at 431.606 kb on - strand, within GFF2736at 431.606 kb on - strand, within GFF2736at 431.606 kb on - strand, within GFF2736at 431.710 kb on + strand, within GFF2736at 431.710 kb on + strand, within GFF2736at 431.710 kb on + strand, within GFF2736at 431.711 kb on - strand, within GFF2736at 431.711 kb on - strand, within GFF2736at 431.711 kb on - strand, within GFF2736at 431.761 kb on + strand, within GFF2736at 431.761 kb on + strand, within GFF2736at 431.762 kb on - strand, within GFF2736at 431.854 kb on + strand, within GFF2736at 431.855 kb on - strand, within GFF2736at 431.920 kb on + strand, within GFF2736at 431.920 kb on + strand, within GFF2736at 431.920 kb on + strand, within GFF2736at 431.920 kb on + strand, within GFF2736at 431.920 kb on + strand, within GFF2736at 431.921 kb on - strand, within GFF2736at 432.239 kb on + strandat 432.328 kb on + strand, within GFF2737at 432.329 kb on - strand, within GFF2737at 432.334 kb on + strand, within GFF2737at 432.334 kb on + strand, within GFF2737at 432.334 kb on + strand, within GFF2737at 432.432 kb on - strand, within GFF2737at 432.731 kb on + strand, within GFF2737at 432.732 kb on - strand, within GFF2737at 432.732 kb on - strand, within GFF2737at 432.784 kb on + strand, within GFF2737at 432.784 kb on + strand, within GFF2737at 432.785 kb on - strand, within GFF2737at 432.794 kb on + strand, within GFF2737at 432.794 kb on + strand, within GFF2737at 432.794 kb on + strand, within GFF2737at 432.794 kb on + strand, within GFF2737at 432.795 kb on - strand, within GFF2737at 432.795 kb on - strand, within GFF2737at 432.860 kb on + strand, within GFF2737at 432.860 kb on + strand, within GFF2737at 433.427 kb on + strandat 433.428 kb on - strandat 433.469 kb on + strandat 433.469 kb on + strandat 433.553 kb on + strandat 433.553 kb on + strandat 433.554 kb on - strandat 433.554 kb on - strandat 433.554 kb on - strandat 433.554 kb on - strandat 433.554 kb on - strandat 433.554 kb on - strandat 433.554 kb on - strandat 433.585 kb on + strandat 433.586 kb on - strandat 433.586 kb on - strandat 433.586 kb on - strandat 433.587 kb on - strandat 433.613 kb on + strandat 433.613 kb on + strandat 433.614 kb on - strandat 433.614 kb on - strandat 433.614 kb on - strandat 433.614 kb on - strandat 433.614 kb on - strandat 433.614 kb on - strandat 433.659 kb on - strand, within GFF2738at 433.666 kb on + strand, within GFF2738at 433.666 kb on + strand, within GFF2738at 433.667 kb on - strand, within GFF2738at 433.667 kb on - strand, within GFF2738at 433.667 kb on - strand, within GFF2738at 433.736 kb on + strand, within GFF2738at 433.736 kb on + strand, within GFF2738at 433.736 kb on + strand, within GFF2738at 433.736 kb on + strand, within GFF2738at 433.736 kb on + strand, within GFF2738at 433.736 kb on + strand, within GFF2738at 433.736 kb on + strand, within GFF2738at 433.737 kb on - strand, within GFF2738at 433.737 kb on - strand, within GFF2738at 433.737 kb on - strand, within GFF2738at 433.737 kb on - strand, within GFF2738at 433.737 kb on - strand, within GFF2738at 433.737 kb on - strand, within GFF2738at 433.737 kb on - strand, within GFF2738at 433.737 kb on - strand, within GFF2738at 433.737 kb on - strand, within GFF2738at 433.738 kb on + strand, within GFF2738at 433.738 kb on + strand, within GFF2738at 433.739 kb on - strand, within GFF2738at 433.784 kb on + strand, within GFF2738at 433.784 kb on + strand, within GFF2738at 433.784 kb on + strand, within GFF2738at 433.784 kb on + strand, within GFF2738at 433.785 kb on - strand, within GFF2738at 433.786 kb on + strand, within GFF2738at 433.904 kb on + strand, within GFF2738at 433.904 kb on + strand, within GFF2738at 433.904 kb on + strand, within GFF2738at 433.905 kb on - strand, within GFF2738at 433.952 kb on + strand, within GFF2738at 433.952 kb on + strand, within GFF2738at 433.952 kb on + strand, within GFF2738at 433.953 kb on - strand, within GFF2738at 433.953 kb on - strand, within GFF2738at 434.121 kb on - strand, within GFF2738at 434.121 kb on - strand, within GFF2738at 434.159 kb on + strand, within GFF2738at 434.159 kb on + strand, within GFF2738at 434.159 kb on + strand, within GFF2738at 434.160 kb on - strand, within GFF2738at 434.160 kb on - strand, within GFF2738at 434.160 kb on - strand, within GFF2738at 434.160 kb on - strand, within GFF2738at 434.160 kb on - strand, within GFF2738at 434.161 kb on + strand, within GFF2738at 434.162 kb on - strand, within GFF2738at 434.162 kb on - strand, within GFF2738at 434.162 kb on - strand, within GFF2738at 434.276 kb on + strand, within GFF2738

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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431,395 + GFF2736 0.54 -0.5
431,395 + GFF2736 0.54 -0.3
431,395 + GFF2736 0.54 +0.1
431,396 - GFF2736 0.54 -0.3
431,396 - GFF2736 0.54 -0.0
431,396 - GFF2736 0.54 +0.1
431,396 - GFF2736 0.54 -1.2
431,605 + GFF2736 0.67 +0.0
431,605 + GFF2736 0.67 +0.2
431,605 + GFF2736 0.67 -0.5
431,606 - GFF2736 0.67 +0.2
431,606 - GFF2736 0.67 -0.6
431,606 - GFF2736 0.67 +0.5
431,606 - GFF2736 0.67 -1.9
431,710 + GFF2736 0.74 +0.2
431,710 + GFF2736 0.74 -0.5
431,710 + GFF2736 0.74 -0.1
431,711 - GFF2736 0.74 -0.2
431,711 - GFF2736 0.74 -0.4
431,711 - GFF2736 0.74 -0.4
431,761 + GFF2736 0.77 +0.8
431,761 + GFF2736 0.77 +0.2
431,762 - GFF2736 0.77 -0.6
431,854 + GFF2736 0.83 -0.5
431,855 - GFF2736 0.83 +0.2
431,920 + GFF2736 0.88 +0.6
431,920 + GFF2736 0.88 -0.4
431,920 + GFF2736 0.88 -0.3
431,920 + GFF2736 0.88 -0.0
431,920 + GFF2736 0.88 +0.3
431,921 - GFF2736 0.88 -0.8
432,239 + -0.0
432,328 + GFF2737 0.13 -0.4
432,329 - GFF2737 0.13 +0.4
432,334 + GFF2737 0.14 -0.1
432,334 + GFF2737 0.14 -0.0
432,334 + GFF2737 0.14 -1.0
432,432 - GFF2737 0.22 +0.9
432,731 + GFF2737 0.49 +0.0
432,732 - GFF2737 0.49 -0.4
432,732 - GFF2737 0.49 -0.6
432,784 + GFF2737 0.54 -0.1
432,784 + GFF2737 0.54 +0.6
432,785 - GFF2737 0.54 -0.1
432,794 + GFF2737 0.55 -0.2
432,794 + GFF2737 0.55 +0.6
432,794 + GFF2737 0.55 -0.2
432,794 + GFF2737 0.55 -0.5
432,795 - GFF2737 0.55 +0.8
432,795 - GFF2737 0.55 +0.6
432,860 + GFF2737 0.60 -0.5
432,860 + GFF2737 0.60 -2.4
433,427 + +0.9
433,428 - -0.5
433,469 + +0.1
433,469 + -1.2
433,553 + +0.4
433,553 + -0.2
433,554 - +0.2
433,554 - +0.0
433,554 - -0.7
433,554 - -0.4
433,554 - -0.2
433,554 - -0.1
433,554 - -0.2
433,585 + -0.2
433,586 - +0.2
433,586 - +0.5
433,586 - -1.3
433,587 - +1.0
433,613 + +0.6
433,613 + -1.1
433,614 - +1.0
433,614 - +0.6
433,614 - +0.5
433,614 - +0.3
433,614 - +0.3
433,614 - -1.2
433,659 - GFF2738 0.11 -0.7
433,666 + GFF2738 0.11 +0.1
433,666 + GFF2738 0.11 +0.3
433,667 - GFF2738 0.11 -0.8
433,667 - GFF2738 0.11 +0.7
433,667 - GFF2738 0.11 +0.3
433,736 + GFF2738 0.14 -0.3
433,736 + GFF2738 0.14 -0.2
433,736 + GFF2738 0.14 +1.2
433,736 + GFF2738 0.14 +0.3
433,736 + GFF2738 0.14 +0.1
433,736 + GFF2738 0.14 -0.4
433,736 + GFF2738 0.14 +0.8
433,737 - GFF2738 0.14 -0.3
433,737 - GFF2738 0.14 +0.5
433,737 - GFF2738 0.14 +0.1
433,737 - GFF2738 0.14 -0.2
433,737 - GFF2738 0.14 +0.6
433,737 - GFF2738 0.14 -0.3
433,737 - GFF2738 0.14 -0.2
433,737 - GFF2738 0.14 +0.9
433,737 - GFF2738 0.14 -1.2
433,738 + GFF2738 0.14 +0.7
433,738 + GFF2738 0.14 -0.3
433,739 - GFF2738 0.14 -0.1
433,784 + GFF2738 0.15 -0.0
433,784 + GFF2738 0.15 -0.5
433,784 + GFF2738 0.15 -0.5
433,784 + GFF2738 0.15 +0.5
433,785 - GFF2738 0.15 +0.9
433,786 + GFF2738 0.15 +0.6
433,904 + GFF2738 0.19 +0.3
433,904 + GFF2738 0.19 -0.5
433,904 + GFF2738 0.19 -0.4
433,905 - GFF2738 0.19 +0.2
433,952 + GFF2738 0.21 -0.2
433,952 + GFF2738 0.21 -0.4
433,952 + GFF2738 0.21 +0.4
433,953 - GFF2738 0.21 +0.3
433,953 - GFF2738 0.21 -0.2
434,121 - GFF2738 0.26 +0.2
434,121 - GFF2738 0.26 +0.9
434,159 + GFF2738 0.27 -0.0
434,159 + GFF2738 0.27 +0.3
434,159 + GFF2738 0.27 -0.2
434,160 - GFF2738 0.27 -0.1
434,160 - GFF2738 0.27 +0.0
434,160 - GFF2738 0.27 +0.7
434,160 - GFF2738 0.27 +0.0
434,160 - GFF2738 0.27 +0.7
434,161 + GFF2738 0.27 -0.3
434,162 - GFF2738 0.27 -0.2
434,162 - GFF2738 0.27 +0.4
434,162 - GFF2738 0.27 +0.4
434,276 + GFF2738 0.31 +0.0

Or see this region's nucleotide sequence