Strain Fitness in Xanthobacter sp. DMC5 around GFF2725

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2724 and GFF2725 are separated by 5 nucleotidesGFF2725 and GFF2726 are separated by 5 nucleotidesGFF2726 and GFF2727 are separated by 10 nucleotides GFF2724 - Putrescine-binding periplasmic protein, at 417,744 to 418,820 GFF2724 GFF2725 - Vitamin B12 import ATP-binding protein BtuD, at 418,826 to 419,971 GFF2725 GFF2726 - hypothetical protein, at 419,977 to 420,837 GFF2726 GFF2727 - Inner membrane ABC transporter permease protein YdcV, at 420,848 to 421,636 GFF2727 Position (kb) 418 419 420Strain fitness (log2 ratio) -2 -1 0 1 2at 417.898 kb on - strand, within GFF2724at 417.898 kb on - strand, within GFF2724at 417.956 kb on + strand, within GFF2724at 417.957 kb on - strand, within GFF2724at 417.957 kb on - strand, within GFF2724at 417.960 kb on + strand, within GFF2724at 417.960 kb on + strand, within GFF2724at 417.961 kb on - strand, within GFF2724at 417.961 kb on - strand, within GFF2724at 417.961 kb on - strand, within GFF2724at 418.299 kb on + strand, within GFF2724at 418.413 kb on + strand, within GFF2724at 418.414 kb on - strand, within GFF2724at 418.414 kb on - strand, within GFF2724at 418.414 kb on - strand, within GFF2724at 418.546 kb on + strand, within GFF2724at 418.560 kb on + strand, within GFF2724at 418.611 kb on + strand, within GFF2724at 418.611 kb on + strand, within GFF2724at 418.611 kb on + strand, within GFF2724at 418.798 kb on - strandat 418.798 kb on - strandat 418.799 kb on + strandat 418.800 kb on - strandat 418.800 kb on - strandat 418.861 kb on + strandat 418.915 kb on + strandat 418.915 kb on + strandat 418.915 kb on + strandat 418.916 kb on - strandat 418.916 kb on - strandat 418.942 kb on - strand, within GFF2725at 419.055 kb on - strand, within GFF2725at 419.055 kb on - strand, within GFF2725at 419.135 kb on + strand, within GFF2725at 419.135 kb on + strand, within GFF2725at 419.135 kb on + strand, within GFF2725at 419.135 kb on + strand, within GFF2725at 419.136 kb on - strand, within GFF2725at 419.177 kb on + strand, within GFF2725at 419.178 kb on - strand, within GFF2725at 419.436 kb on - strand, within GFF2725at 419.549 kb on + strand, within GFF2725at 419.550 kb on - strand, within GFF2725at 419.925 kb on - strandat 419.925 kb on - strandat 420.086 kb on - strand, within GFF2726at 420.086 kb on - strand, within GFF2726at 420.086 kb on - strand, within GFF2726at 420.107 kb on + strand, within GFF2726at 420.108 kb on - strand, within GFF2726at 420.136 kb on + strand, within GFF2726at 420.160 kb on + strand, within GFF2726at 420.160 kb on + strand, within GFF2726at 420.160 kb on + strand, within GFF2726at 420.160 kb on + strand, within GFF2726at 420.160 kb on + strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.163 kb on + strand, within GFF2726at 420.163 kb on + strand, within GFF2726at 420.163 kb on + strand, within GFF2726at 420.164 kb on - strand, within GFF2726at 420.164 kb on - strand, within GFF2726at 420.232 kb on + strand, within GFF2726at 420.232 kb on + strand, within GFF2726at 420.310 kb on + strand, within GFF2726at 420.310 kb on + strand, within GFF2726at 420.310 kb on + strand, within GFF2726at 420.310 kb on + strand, within GFF2726at 420.311 kb on - strand, within GFF2726at 420.311 kb on - strand, within GFF2726at 420.344 kb on + strand, within GFF2726at 420.344 kb on + strand, within GFF2726at 420.345 kb on - strand, within GFF2726at 420.345 kb on - strand, within GFF2726at 420.345 kb on - strand, within GFF2726at 420.463 kb on + strand, within GFF2726at 420.646 kb on + strand, within GFF2726at 420.646 kb on + strand, within GFF2726at 420.646 kb on + strand, within GFF2726at 420.646 kb on + strand, within GFF2726at 420.647 kb on - strand, within GFF2726at 420.672 kb on + strand, within GFF2726at 420.706 kb on + strand, within GFF2726

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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417,898 - GFF2724 0.14 -0.7
417,898 - GFF2724 0.14 +0.5
417,956 + GFF2724 0.20 -0.1
417,957 - GFF2724 0.20 +1.0
417,957 - GFF2724 0.20 -0.3
417,960 + GFF2724 0.20 -0.7
417,960 + GFF2724 0.20 -0.4
417,961 - GFF2724 0.20 +0.6
417,961 - GFF2724 0.20 +0.1
417,961 - GFF2724 0.20 -1.0
418,299 + GFF2724 0.52 +0.2
418,413 + GFF2724 0.62 -1.2
418,414 - GFF2724 0.62 +0.9
418,414 - GFF2724 0.62 +0.6
418,414 - GFF2724 0.62 +1.2
418,546 + GFF2724 0.74 -0.4
418,560 + GFF2724 0.76 -0.7
418,611 + GFF2724 0.81 +0.4
418,611 + GFF2724 0.81 +0.6
418,611 + GFF2724 0.81 -0.2
418,798 - +0.5
418,798 - +0.2
418,799 + +1.6
418,800 - +0.9
418,800 - +0.8
418,861 + +0.6
418,915 + -0.3
418,915 + +0.2
418,915 + +0.0
418,916 - +0.6
418,916 - -0.6
418,942 - GFF2725 0.10 -0.6
419,055 - GFF2725 0.20 +0.3
419,055 - GFF2725 0.20 -2.0
419,135 + GFF2725 0.27 -0.1
419,135 + GFF2725 0.27 +0.3
419,135 + GFF2725 0.27 -0.7
419,135 + GFF2725 0.27 +0.6
419,136 - GFF2725 0.27 -0.1
419,177 + GFF2725 0.31 -0.4
419,178 - GFF2725 0.31 -0.7
419,436 - GFF2725 0.53 +0.3
419,549 + GFF2725 0.63 -0.7
419,550 - GFF2725 0.63 -0.7
419,925 - -0.2
419,925 - +0.1
420,086 - GFF2726 0.13 +1.2
420,086 - GFF2726 0.13 -0.9
420,086 - GFF2726 0.13 -0.8
420,107 + GFF2726 0.15 -0.4
420,108 - GFF2726 0.15 -0.1
420,136 + GFF2726 0.18 -0.6
420,160 + GFF2726 0.21 -0.3
420,160 + GFF2726 0.21 -0.8
420,160 + GFF2726 0.21 +0.3
420,160 + GFF2726 0.21 -0.4
420,160 + GFF2726 0.21 -0.2
420,161 - GFF2726 0.21 +0.3
420,161 - GFF2726 0.21 +0.1
420,161 - GFF2726 0.21 -0.6
420,161 - GFF2726 0.21 +0.0
420,161 - GFF2726 0.21 -0.1
420,161 - GFF2726 0.21 +0.2
420,161 - GFF2726 0.21 -0.4
420,161 - GFF2726 0.21 -0.3
420,161 - GFF2726 0.21 +0.5
420,163 + GFF2726 0.22 -0.5
420,163 + GFF2726 0.22 +0.3
420,163 + GFF2726 0.22 +0.4
420,164 - GFF2726 0.22 -0.1
420,164 - GFF2726 0.22 +0.7
420,232 + GFF2726 0.30 +2.2
420,232 + GFF2726 0.30 +0.8
420,310 + GFF2726 0.39 -0.3
420,310 + GFF2726 0.39 -0.2
420,310 + GFF2726 0.39 -0.7
420,310 + GFF2726 0.39 +0.4
420,311 - GFF2726 0.39 +0.3
420,311 - GFF2726 0.39 -0.1
420,344 + GFF2726 0.43 -1.2
420,344 + GFF2726 0.43 +0.5
420,345 - GFF2726 0.43 +0.7
420,345 - GFF2726 0.43 +0.2
420,345 - GFF2726 0.43 +0.4
420,463 + GFF2726 0.56 +0.6
420,646 + GFF2726 0.78 +0.2
420,646 + GFF2726 0.78 +0.8
420,646 + GFF2726 0.78 +0.1
420,646 + GFF2726 0.78 +0.6
420,647 - GFF2726 0.78 -0.1
420,672 + GFF2726 0.81 +0.2
420,706 + GFF2726 0.85 -0.1

Or see this region's nucleotide sequence