Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2711 and GFF2712 overlap by 4 nucleotides GFF2712 and GFF2713 overlap by 8 nucleotides GFF2713 and GFF2714 are separated by 11 nucleotides GFF2714 and GFF2715 are separated by 199 nucleotides
GFF2711 - hypothetical protein, at 402,884 to 403,624
GFF2711
GFF2712 - Biopolymer transport protein ExbD, at 403,621 to 404,052
GFF2712
GFF2713 - Tol-Pal system protein TolQ, at 404,045 to 404,530
GFF2713
GFF2714 - hypothetical protein, at 404,542 to 406,365
GFF2714
GFF2715 - hypothetical protein, at 406,565 to 409,915
GFF2715
Position (kb) 404
405
406
407 Strain fitness (log2 ratio) -2
-1
0
1
2 at 404.160 kb on + strand, within GFF2713 at 404.161 kb on - strand, within GFF2713 at 404.161 kb on - strand, within GFF2713 at 404.161 kb on - strand, within GFF2713 at 404.317 kb on + strand, within GFF2713 at 404.317 kb on + strand, within GFF2713 at 404.317 kb on + strand, within GFF2713 at 404.318 kb on - strand, within GFF2713 at 404.318 kb on - strand, within GFF2713 at 404.319 kb on + strand, within GFF2713 at 404.319 kb on + strand, within GFF2713 at 404.319 kb on + strand, within GFF2713 at 404.319 kb on + strand, within GFF2713 at 404.319 kb on + strand, within GFF2713 at 404.319 kb on + strand, within GFF2713 at 404.320 kb on - strand, within GFF2713 at 404.320 kb on - strand, within GFF2713 at 404.320 kb on - strand, within GFF2713 at 404.320 kb on - strand, within GFF2713 at 404.320 kb on - strand, within GFF2713 at 404.397 kb on + strand, within GFF2713 at 404.397 kb on + strand, within GFF2713 at 404.398 kb on - strand, within GFF2713 at 404.398 kb on - strand, within GFF2713 at 404.398 kb on - strand, within GFF2713 at 404.493 kb on + strand at 404.493 kb on + strand at 404.494 kb on - strand at 404.494 kb on - strand at 404.494 kb on - strand at 404.494 kb on - strand at 404.494 kb on - strand at 404.497 kb on - strand at 404.589 kb on + strand at 404.589 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.633 kb on + strand at 404.634 kb on - strand at 404.634 kb on - strand at 404.634 kb on - strand at 404.634 kb on - strand at 404.634 kb on - strand at 404.666 kb on + strand at 404.666 kb on + strand at 404.666 kb on + strand at 404.667 kb on - strand at 404.672 kb on + strand at 404.673 kb on - strand at 404.673 kb on - strand at 404.681 kb on + strand at 404.681 kb on + strand at 404.682 kb on - strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.685 kb on - strand at 404.714 kb on + strand at 404.714 kb on + strand at 404.715 kb on - strand at 404.715 kb on - strand at 404.735 kb on + strand, within GFF2714 at 404.735 kb on + strand, within GFF2714 at 404.736 kb on - strand, within GFF2714 at 404.736 kb on - strand, within GFF2714 at 404.801 kb on + strand, within GFF2714 at 404.801 kb on + strand, within GFF2714 at 404.801 kb on + strand, within GFF2714 at 404.801 kb on + strand, within GFF2714 at 404.801 kb on + strand, within GFF2714 at 404.801 kb on + strand, within GFF2714 at 404.801 kb on + strand, within GFF2714 at 404.801 kb on + strand, within GFF2714 at 404.801 kb on + strand, within GFF2714 at 404.802 kb on - strand, within GFF2714 at 404.802 kb on - strand, within GFF2714 at 404.802 kb on - strand, within GFF2714 at 404.802 kb on - strand, within GFF2714 at 404.802 kb on - strand, within GFF2714 at 404.819 kb on + strand, within GFF2714 at 404.819 kb on + strand, within GFF2714 at 404.819 kb on + strand, within GFF2714 at 404.820 kb on - strand, within GFF2714 at 404.870 kb on + strand, within GFF2714 at 404.873 kb on + strand, within GFF2714 at 404.873 kb on + strand, within GFF2714 at 404.874 kb on - strand, within GFF2714 at 404.874 kb on - strand, within GFF2714 at 404.874 kb on - strand, within GFF2714 at 404.874 kb on - strand, within GFF2714 at 405.175 kb on + strand, within GFF2714 at 405.175 kb on + strand, within GFF2714 at 405.176 kb on - strand, within GFF2714 at 405.206 kb on + strand, within GFF2714 at 405.207 kb on - strand, within GFF2714 at 405.242 kb on + strand, within GFF2714 at 405.242 kb on + strand, within GFF2714 at 405.242 kb on + strand, within GFF2714 at 405.242 kb on + strand, within GFF2714 at 405.242 kb on + strand, within GFF2714 at 405.242 kb on + strand, within GFF2714 at 405.242 kb on + strand, within GFF2714 at 405.243 kb on - strand, within GFF2714 at 405.243 kb on - strand, within GFF2714 at 405.243 kb on - strand, within GFF2714 at 405.243 kb on - strand, within GFF2714 at 405.248 kb on + strand, within GFF2714 at 405.249 kb on - strand, within GFF2714 at 405.249 kb on - strand, within GFF2714 at 405.249 kb on - strand, within GFF2714 at 405.350 kb on + strand, within GFF2714 at 405.350 kb on + strand, within GFF2714 at 405.350 kb on + strand, within GFF2714 at 405.350 kb on + strand, within GFF2714 at 405.350 kb on + strand, within GFF2714 at 405.351 kb on - strand, within GFF2714 at 405.351 kb on - strand, within GFF2714 at 405.351 kb on - strand, within GFF2714 at 405.351 kb on - strand, within GFF2714 at 405.351 kb on - strand, within GFF2714 at 405.368 kb on + strand, within GFF2714 at 405.368 kb on + strand, within GFF2714 at 405.369 kb on - strand, within GFF2714 at 405.369 kb on - strand, within GFF2714 at 405.369 kb on - strand, within GFF2714 at 405.410 kb on + strand, within GFF2714 at 405.428 kb on + strand, within GFF2714 at 405.429 kb on - strand, within GFF2714 at 405.429 kb on - strand, within GFF2714 at 405.549 kb on + strand, within GFF2714 at 405.551 kb on + strand, within GFF2714 at 405.551 kb on + strand, within GFF2714 at 405.551 kb on + strand, within GFF2714 at 405.552 kb on - strand, within GFF2714 at 405.881 kb on + strand, within GFF2714 at 405.881 kb on + strand, within GFF2714 at 405.881 kb on + strand, within GFF2714 at 405.882 kb on - strand, within GFF2714 at 405.882 kb on - strand, within GFF2714 at 405.882 kb on - strand, within GFF2714 at 405.882 kb on - strand, within GFF2714 at 405.882 kb on - strand, within GFF2714 at 405.899 kb on + strand, within GFF2714 at 405.915 kb on - strand, within GFF2714 at 405.915 kb on - strand, within GFF2714 at 405.915 kb on - strand, within GFF2714 at 405.930 kb on + strand, within GFF2714 at 405.944 kb on + strand, within GFF2714 at 405.944 kb on + strand, within GFF2714 at 405.944 kb on + strand, within GFF2714 at 405.944 kb on + strand, within GFF2714 at 405.944 kb on + strand, within GFF2714 at 405.944 kb on + strand, within GFF2714 at 405.945 kb on - strand, within GFF2714 at 405.945 kb on - strand, within GFF2714 at 405.945 kb on - strand, within GFF2714 at 405.945 kb on - strand, within GFF2714 at 405.945 kb on - strand, within GFF2714 at 405.945 kb on - strand, within GFF2714 at 405.945 kb on - strand, within GFF2714 at 405.945 kb on - strand, within GFF2714 at 405.945 kb on - strand, within GFF2714 at 405.977 kb on + strand, within GFF2714 at 405.977 kb on + strand, within GFF2714 at 405.977 kb on + strand, within GFF2714 at 405.978 kb on - strand, within GFF2714 at 405.978 kb on - strand, within GFF2714 at 405.978 kb on - strand, within GFF2714 at 405.978 kb on - strand, within GFF2714 at 405.978 kb on - strand, within GFF2714 at 406.370 kb on + strand at 406.370 kb on + strand at 406.370 kb on + strand at 406.370 kb on + strand at 406.370 kb on + strand at 406.371 kb on - strand at 406.371 kb on - strand at 406.371 kb on - strand at 406.371 kb on - strand at 406.371 kb on - strand at 406.371 kb on - strand at 406.371 kb on - strand at 406.371 kb on - strand at 406.795 kb on + strand at 406.917 kb on + strand, within GFF2715 at 406.917 kb on + strand, within GFF2715 at 406.917 kb on + strand, within GFF2715 at 406.918 kb on - strand, within GFF2715 at 406.918 kb on - strand, within GFF2715 at 406.918 kb on - strand, within GFF2715 at 406.918 kb on - strand, within GFF2715 at 406.918 kb on - strand, within GFF2715 at 406.959 kb on + strand, within GFF2715 at 407.168 kb on - strand, within GFF2715 at 407.168 kb on - strand, within GFF2715 at 407.168 kb on - strand, within GFF2715 at 407.209 kb on + strand, within GFF2715
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 404,160 + GFF2713 0.24 -0.2 404,161 - GFF2713 0.24 -0.8 404,161 - GFF2713 0.24 +0.1 404,161 - GFF2713 0.24 -0.2 404,317 + GFF2713 0.56 +0.1 404,317 + GFF2713 0.56 +0.4 404,317 + GFF2713 0.56 +0.2 404,318 - GFF2713 0.56 +0.0 404,318 - GFF2713 0.56 -0.8 404,319 + GFF2713 0.56 +0.3 404,319 + GFF2713 0.56 -0.1 404,319 + GFF2713 0.56 +0.1 404,319 + GFF2713 0.56 +0.3 404,319 + GFF2713 0.56 +1.4 404,319 + GFF2713 0.56 -0.1 404,320 - GFF2713 0.57 -0.8 404,320 - GFF2713 0.57 +0.7 404,320 - GFF2713 0.57 -0.3 404,320 - GFF2713 0.57 -0.3 404,320 - GFF2713 0.57 +1.0 404,397 + GFF2713 0.72 +0.3 404,397 + GFF2713 0.72 +0.1 404,398 - GFF2713 0.73 +0.1 404,398 - GFF2713 0.73 -1.1 404,398 - GFF2713 0.73 +0.2 404,493 + +0.5 404,493 + +1.6 404,494 - -0.7 404,494 - -0.9 404,494 - -1.5 404,494 - +0.0 404,494 - +2.0 404,497 - +0.4 404,589 + +0.0 404,589 + +0.3 404,591 + +0.5 404,591 + +0.0 404,633 + -0.4 404,634 - -0.1 404,634 - +0.7 404,634 - -0.2 404,634 - -0.1 404,634 - -0.4 404,666 + +0.5 404,666 + -2.4 404,666 + -0.1 404,667 - +0.0 404,672 + +0.4 404,673 - -0.2 404,673 - +1.5 404,681 + -0.2 404,681 + -0.0 404,682 - +0.6 404,684 + -0.1 404,684 + +0.4 404,685 - -0.4 404,714 + +0.5 404,714 + +0.5 404,715 - -0.3 404,715 - -0.7 404,735 + GFF2714 0.11 +0.1 404,735 + GFF2714 0.11 +0.2 404,736 - GFF2714 0.11 +1.2 404,736 - GFF2714 0.11 +0.8 404,801 + GFF2714 0.14 +0.1 404,801 + GFF2714 0.14 +0.2 404,801 + GFF2714 0.14 -0.2 404,801 + GFF2714 0.14 -0.1 404,801 + GFF2714 0.14 -0.1 404,801 + GFF2714 0.14 +0.6 404,801 + GFF2714 0.14 -0.3 404,801 + GFF2714 0.14 -0.6 404,801 + GFF2714 0.14 -0.0 404,802 - GFF2714 0.14 +0.3 404,802 - GFF2714 0.14 -0.3 404,802 - GFF2714 0.14 +0.2 404,802 - GFF2714 0.14 +0.4 404,802 - GFF2714 0.14 -0.7 404,819 + GFF2714 0.15 -0.0 404,819 + GFF2714 0.15 -0.6 404,819 + GFF2714 0.15 +0.0 404,820 - GFF2714 0.15 -0.2 404,870 + GFF2714 0.18 -0.3 404,873 + GFF2714 0.18 -0.0 404,873 + GFF2714 0.18 +0.2 404,874 - GFF2714 0.18 -0.1 404,874 - GFF2714 0.18 +0.4 404,874 - GFF2714 0.18 +0.4 404,874 - GFF2714 0.18 +0.3 405,175 + GFF2714 0.35 -0.1 405,175 + GFF2714 0.35 -0.5 405,176 - GFF2714 0.35 -1.0 405,206 + GFF2714 0.36 +0.2 405,207 - GFF2714 0.36 -0.2 405,242 + GFF2714 0.38 +0.5 405,242 + GFF2714 0.38 +0.2 405,242 + GFF2714 0.38 +0.5 405,242 + GFF2714 0.38 -0.5 405,242 + GFF2714 0.38 +0.8 405,242 + GFF2714 0.38 -1.2 405,242 + GFF2714 0.38 -0.3 405,243 - GFF2714 0.38 +0.9 405,243 - GFF2714 0.38 +0.3 405,243 - GFF2714 0.38 -0.7 405,243 - GFF2714 0.38 -0.0 405,248 + GFF2714 0.39 +0.1 405,249 - GFF2714 0.39 -0.7 405,249 - GFF2714 0.39 +0.2 405,249 - GFF2714 0.39 -0.2 405,350 + GFF2714 0.44 +0.1 405,350 + GFF2714 0.44 +0.5 405,350 + GFF2714 0.44 +1.0 405,350 + GFF2714 0.44 -0.3 405,350 + GFF2714 0.44 +1.3 405,351 - GFF2714 0.44 -0.2 405,351 - GFF2714 0.44 -0.5 405,351 - GFF2714 0.44 -1.3 405,351 - GFF2714 0.44 -0.0 405,351 - GFF2714 0.44 +0.3 405,368 + GFF2714 0.45 +0.1 405,368 + GFF2714 0.45 -0.3 405,369 - GFF2714 0.45 -0.3 405,369 - GFF2714 0.45 +0.2 405,369 - GFF2714 0.45 -0.5 405,410 + GFF2714 0.48 -0.8 405,428 + GFF2714 0.49 +0.7 405,429 - GFF2714 0.49 -0.2 405,429 - GFF2714 0.49 -1.4 405,549 + GFF2714 0.55 -0.4 405,551 + GFF2714 0.55 -0.1 405,551 + GFF2714 0.55 +1.5 405,551 + GFF2714 0.55 +0.4 405,552 - GFF2714 0.55 +1.2 405,881 + GFF2714 0.73 -0.8 405,881 + GFF2714 0.73 -2.3 405,881 + GFF2714 0.73 +0.9 405,882 - GFF2714 0.73 -0.7 405,882 - GFF2714 0.73 +0.5 405,882 - GFF2714 0.73 +0.3 405,882 - GFF2714 0.73 -0.4 405,882 - GFF2714 0.73 -0.1 405,899 + GFF2714 0.74 -0.2 405,915 - GFF2714 0.75 -2.0 405,915 - GFF2714 0.75 -0.8 405,915 - GFF2714 0.75 -0.9 405,930 + GFF2714 0.76 +0.5 405,944 + GFF2714 0.77 -0.0 405,944 + GFF2714 0.77 -0.5 405,944 + GFF2714 0.77 -0.0 405,944 + GFF2714 0.77 -0.4 405,944 + GFF2714 0.77 -0.3 405,944 + GFF2714 0.77 -0.6 405,945 - GFF2714 0.77 +0.4 405,945 - GFF2714 0.77 -0.3 405,945 - GFF2714 0.77 -0.6 405,945 - GFF2714 0.77 +1.0 405,945 - GFF2714 0.77 +0.2 405,945 - GFF2714 0.77 -0.3 405,945 - GFF2714 0.77 -0.0 405,945 - GFF2714 0.77 -0.6 405,945 - GFF2714 0.77 -0.5 405,977 + GFF2714 0.79 +0.3 405,977 + GFF2714 0.79 -1.3 405,977 + GFF2714 0.79 -0.2 405,978 - GFF2714 0.79 -0.9 405,978 - GFF2714 0.79 +0.4 405,978 - GFF2714 0.79 -0.4 405,978 - GFF2714 0.79 +0.4 405,978 - GFF2714 0.79 +0.2 406,370 + -0.4 406,370 + -0.2 406,370 + -1.3 406,370 + +0.5 406,370 + +0.6 406,371 - +0.2 406,371 - +0.2 406,371 - +0.9 406,371 - -0.5 406,371 - -0.4 406,371 - -0.2 406,371 - +0.9 406,371 - -0.8 406,795 + +0.5 406,917 + GFF2715 0.11 +0.3 406,917 + GFF2715 0.11 +0.7 406,917 + GFF2715 0.11 -0.3 406,918 - GFF2715 0.11 -1.5 406,918 - GFF2715 0.11 -0.1 406,918 - GFF2715 0.11 +2.2 406,918 - GFF2715 0.11 +0.5 406,918 - GFF2715 0.11 +0.7 406,959 + GFF2715 0.12 +0.3 407,168 - GFF2715 0.18 +0.8 407,168 - GFF2715 0.18 -0.1 407,168 - GFF2715 0.18 +0.0 407,209 + GFF2715 0.19 +0.3
Or see this region's nucleotide sequence