Strain Fitness in Xanthobacter sp. DMC5 around GFF2703

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2702 and GFF2703 are separated by 177 nucleotidesGFF2703 and GFF2704 are separated by 292 nucleotides GFF2702 - hypothetical protein, at 389,141 to 391,699 GFF2702 GFF2703 - IS3 family transposase ISRle5, at 391,877 to 392,539 GFF2703 GFF2704 - putative RNA polymerase sigma factor FecI, at 392,832 to 393,338 GFF2704 Position (kb) 391 392 393Strain fitness (log2 ratio) -2 -1 0 1at 390.954 kb on + strand, within GFF2702at 390.954 kb on + strand, within GFF2702at 390.954 kb on + strand, within GFF2702at 390.954 kb on + strand, within GFF2702at 390.955 kb on - strand, within GFF2702at 390.955 kb on - strand, within GFF2702at 390.955 kb on - strand, within GFF2702at 390.964 kb on + strand, within GFF2702at 390.964 kb on + strand, within GFF2702at 390.964 kb on + strand, within GFF2702at 390.964 kb on + strand, within GFF2702at 390.965 kb on - strand, within GFF2702at 390.965 kb on - strand, within GFF2702at 390.966 kb on + strand, within GFF2702at 390.966 kb on + strand, within GFF2702at 390.966 kb on + strand, within GFF2702at 390.966 kb on + strand, within GFF2702at 390.967 kb on - strand, within GFF2702at 390.967 kb on - strand, within GFF2702at 390.967 kb on - strand, within GFF2702at 390.967 kb on - strand, within GFF2702at 390.967 kb on - strand, within GFF2702at 390.967 kb on - strand, within GFF2702at 390.967 kb on - strand, within GFF2702at 390.967 kb on - strand, within GFF2702at 390.967 kb on - strand, within GFF2702at 391.087 kb on + strand, within GFF2702at 391.087 kb on + strand, within GFF2702at 391.087 kb on + strand, within GFF2702at 391.088 kb on - strand, within GFF2702at 391.088 kb on - strand, within GFF2702at 391.163 kb on + strand, within GFF2702at 391.163 kb on + strand, within GFF2702at 391.164 kb on - strand, within GFF2702at 391.179 kb on + strand, within GFF2702at 391.179 kb on + strand, within GFF2702at 391.179 kb on + strand, within GFF2702at 391.180 kb on - strand, within GFF2702at 391.205 kb on + strand, within GFF2702at 391.368 kb on + strand, within GFF2702at 391.368 kb on + strand, within GFF2702at 391.368 kb on + strand, within GFF2702at 391.368 kb on + strand, within GFF2702at 391.368 kb on + strand, within GFF2702at 391.368 kb on + strand, within GFF2702at 391.368 kb on + strand, within GFF2702at 391.368 kb on + strand, within GFF2702at 391.368 kb on + strand, within GFF2702at 391.368 kb on + strand, within GFF2702at 391.369 kb on - strand, within GFF2702at 391.369 kb on - strand, within GFF2702at 391.369 kb on - strand, within GFF2702at 391.369 kb on - strand, within GFF2702at 391.369 kb on - strand, within GFF2702at 391.369 kb on - strand, within GFF2702at 391.369 kb on - strand, within GFF2702at 391.369 kb on - strand, within GFF2702at 391.369 kb on - strand, within GFF2702at 391.425 kb on - strand, within GFF2702at 391.425 kb on - strand, within GFF2702at 391.425 kb on - strand, within GFF2702at 391.552 kb on + strandat 391.689 kb on + strandat 391.731 kb on + strandat 391.731 kb on + strandat 391.731 kb on + strandat 391.732 kb on - strandat 391.751 kb on - strandat 391.751 kb on - strandat 391.751 kb on - strandat 391.836 kb on + strandat 391.836 kb on + strandat 391.837 kb on - strandat 391.860 kb on + strandat 391.861 kb on - strandat 391.890 kb on - strandat 391.949 kb on + strand, within GFF2703at 391.958 kb on + strand, within GFF2703at 391.958 kb on + strand, within GFF2703at 391.958 kb on + strand, within GFF2703at 391.959 kb on - strand, within GFF2703at 391.959 kb on - strand, within GFF2703at 392.291 kb on + strand, within GFF2703at 392.291 kb on + strand, within GFF2703at 392.292 kb on - strand, within GFF2703at 392.351 kb on - strand, within GFF2703at 392.544 kb on + strandat 392.544 kb on + strandat 392.545 kb on - strandat 392.545 kb on - strandat 392.575 kb on + strandat 392.575 kb on + strandat 392.575 kb on + strandat 392.576 kb on - strandat 392.576 kb on - strandat 392.655 kb on - strandat 392.663 kb on + strandat 392.664 kb on - strandat 392.664 kb on - strandat 392.667 kb on + strandat 392.667 kb on + strandat 392.668 kb on - strandat 392.668 kb on - strandat 392.668 kb on - strandat 392.668 kb on - strandat 392.752 kb on + strandat 392.753 kb on - strandat 392.862 kb on + strandat 392.862 kb on + strandat 392.863 kb on - strandat 392.863 kb on - strandat 393.003 kb on + strand, within GFF2704at 393.003 kb on + strand, within GFF2704at 393.003 kb on + strand, within GFF2704at 393.003 kb on + strand, within GFF2704at 393.003 kb on + strand, within GFF2704at 393.004 kb on - strand, within GFF2704at 393.004 kb on - strand, within GFF2704at 393.004 kb on - strand, within GFF2704at 393.004 kb on - strand, within GFF2704at 393.004 kb on - strand, within GFF2704at 393.004 kb on - strand, within GFF2704at 393.158 kb on - strand, within GFF2704at 393.294 kb on + strandat 393.336 kb on + strandat 393.336 kb on + strandat 393.336 kb on + strandat 393.336 kb on + strandat 393.337 kb on - strandat 393.337 kb on - strandat 393.337 kb on - strandat 393.337 kb on - strandat 393.389 kb on - strandat 393.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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390,954 + GFF2702 0.71 -0.4
390,954 + GFF2702 0.71 +0.2
390,954 + GFF2702 0.71 -0.3
390,954 + GFF2702 0.71 +1.5
390,955 - GFF2702 0.71 +0.7
390,955 - GFF2702 0.71 -0.7
390,955 - GFF2702 0.71 -0.5
390,964 + GFF2702 0.71 -0.5
390,964 + GFF2702 0.71 -2.2
390,964 + GFF2702 0.71 +0.5
390,964 + GFF2702 0.71 +0.6
390,965 - GFF2702 0.71 +0.4
390,965 - GFF2702 0.71 +0.4
390,966 + GFF2702 0.71 +0.3
390,966 + GFF2702 0.71 +0.2
390,966 + GFF2702 0.71 +1.0
390,966 + GFF2702 0.71 -0.0
390,967 - GFF2702 0.71 +0.1
390,967 - GFF2702 0.71 -0.4
390,967 - GFF2702 0.71 +0.0
390,967 - GFF2702 0.71 +0.5
390,967 - GFF2702 0.71 +0.2
390,967 - GFF2702 0.71 -0.0
390,967 - GFF2702 0.71 +0.7
390,967 - GFF2702 0.71 -0.0
390,967 - GFF2702 0.71 -0.2
391,087 + GFF2702 0.76 -0.4
391,087 + GFF2702 0.76 -0.8
391,087 + GFF2702 0.76 +0.0
391,088 - GFF2702 0.76 -0.9
391,088 - GFF2702 0.76 -1.4
391,163 + GFF2702 0.79 +0.7
391,163 + GFF2702 0.79 +0.0
391,164 - GFF2702 0.79 -0.1
391,179 + GFF2702 0.80 -0.2
391,179 + GFF2702 0.80 +0.8
391,179 + GFF2702 0.80 +0.3
391,180 - GFF2702 0.80 -1.3
391,205 + GFF2702 0.81 -0.3
391,368 + GFF2702 0.87 +1.5
391,368 + GFF2702 0.87 +0.4
391,368 + GFF2702 0.87 +0.6
391,368 + GFF2702 0.87 +0.2
391,368 + GFF2702 0.87 -1.7
391,368 + GFF2702 0.87 -0.1
391,368 + GFF2702 0.87 -0.3
391,368 + GFF2702 0.87 +0.2
391,368 + GFF2702 0.87 +0.7
391,368 + GFF2702 0.87 -0.2
391,369 - GFF2702 0.87 -0.7
391,369 - GFF2702 0.87 +0.3
391,369 - GFF2702 0.87 -0.4
391,369 - GFF2702 0.87 +0.4
391,369 - GFF2702 0.87 -0.8
391,369 - GFF2702 0.87 +0.1
391,369 - GFF2702 0.87 +0.1
391,369 - GFF2702 0.87 -1.0
391,369 - GFF2702 0.87 +0.7
391,425 - GFF2702 0.89 -1.1
391,425 - GFF2702 0.89 -0.4
391,425 - GFF2702 0.89 +0.7
391,552 + -0.5
391,689 + +1.3
391,731 + +0.6
391,731 + -0.1
391,731 + +1.2
391,732 - -0.5
391,751 - +0.1
391,751 - +0.7
391,751 - +1.3
391,836 + -0.2
391,836 + -0.2
391,837 - -0.3
391,860 + +0.8
391,861 - +0.2
391,890 - -0.1
391,949 + GFF2703 0.11 +0.5
391,958 + GFF2703 0.12 +0.7
391,958 + GFF2703 0.12 -0.1
391,958 + GFF2703 0.12 -0.2
391,959 - GFF2703 0.12 -0.2
391,959 - GFF2703 0.12 -0.1
392,291 + GFF2703 0.62 -0.8
392,291 + GFF2703 0.62 -0.6
392,292 - GFF2703 0.63 +0.3
392,351 - GFF2703 0.71 +0.9
392,544 + +0.5
392,544 + +0.2
392,545 - -1.0
392,545 - +0.2
392,575 + +0.6
392,575 + +1.4
392,575 + +0.9
392,576 - -0.5
392,576 - +0.2
392,655 - -0.3
392,663 + +0.1
392,664 - -0.7
392,664 - +0.4
392,667 + -0.6
392,667 + -0.2
392,668 - -0.6
392,668 - -1.0
392,668 - +0.4
392,668 - -0.2
392,752 + -0.6
392,753 - +0.2
392,862 + +0.0
392,862 + +0.5
392,863 - -0.8
392,863 - -1.5
393,003 + GFF2704 0.34 -0.0
393,003 + GFF2704 0.34 -0.2
393,003 + GFF2704 0.34 -0.8
393,003 + GFF2704 0.34 +0.6
393,003 + GFF2704 0.34 -0.6
393,004 - GFF2704 0.34 -0.3
393,004 - GFF2704 0.34 -0.3
393,004 - GFF2704 0.34 +0.2
393,004 - GFF2704 0.34 -0.7
393,004 - GFF2704 0.34 +0.6
393,004 - GFF2704 0.34 -0.4
393,158 - GFF2704 0.64 +0.1
393,294 + +0.3
393,336 + -0.2
393,336 + +0.0
393,336 + -0.2
393,336 + -0.3
393,337 - +0.2
393,337 - +0.6
393,337 - -0.5
393,337 - +0.0
393,389 - +0.1
393,489 - -0.8

Or see this region's nucleotide sequence