Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF269 and GFF270 are separated by 180 nucleotides GFF270 and GFF271 are separated by 236 nucleotides GFF271 and GFF272 are separated by 44 nucleotides
GFF269 - Acetyl-CoA:oxalate CoA-transferase, at 283,917 to 285,092
GFF269
GFF270 - Acyl-CoA dehydrogenase, at 285,273 to 286,466
GFF270
GFF271 - HTH-type transcriptional repressor KstR2, at 286,703 to 287,275
GFF271
GFF272 - hypothetical protein, at 287,320 to 288,213
GFF272
Position (kb) 285
286
287 Strain fitness (log2 ratio) -1
0
1
2 at 284.431 kb on + strand, within GFF269 at 284.431 kb on + strand, within GFF269 at 284.431 kb on + strand, within GFF269 at 284.431 kb on + strand, within GFF269 at 284.431 kb on + strand, within GFF269 at 284.432 kb on - strand, within GFF269 at 284.432 kb on - strand, within GFF269 at 284.432 kb on - strand, within GFF269 at 284.432 kb on - strand, within GFF269 at 284.432 kb on - strand, within GFF269 at 284.432 kb on - strand, within GFF269 at 284.432 kb on - strand, within GFF269 at 284.551 kb on + strand, within GFF269 at 284.551 kb on + strand, within GFF269 at 284.659 kb on + strand, within GFF269 at 284.659 kb on + strand, within GFF269 at 284.659 kb on + strand, within GFF269 at 284.659 kb on + strand, within GFF269 at 284.749 kb on + strand, within GFF269 at 284.899 kb on + strand, within GFF269 at 284.900 kb on - strand, within GFF269 at 285.185 kb on + strand at 285.343 kb on + strand at 285.343 kb on + strand at 285.343 kb on + strand at 285.343 kb on + strand at 285.343 kb on + strand at 285.344 kb on - strand at 285.344 kb on - strand at 285.578 kb on - strand, within GFF270 at 285.638 kb on - strand, within GFF270 at 285.655 kb on + strand, within GFF270 at 286.091 kb on - strand, within GFF270 at 286.123 kb on + strand, within GFF270 at 286.123 kb on + strand, within GFF270 at 286.123 kb on + strand, within GFF270 at 286.123 kb on + strand, within GFF270 at 286.123 kb on + strand, within GFF270 at 286.123 kb on + strand, within GFF270 at 286.222 kb on + strand, within GFF270 at 286.222 kb on + strand, within GFF270 at 286.363 kb on + strand at 286.363 kb on + strand at 286.418 kb on + strand at 286.766 kb on + strand, within GFF271 at 286.766 kb on + strand, within GFF271 at 286.766 kb on + strand, within GFF271 at 286.767 kb on - strand, within GFF271 at 286.827 kb on - strand, within GFF271 at 286.832 kb on + strand, within GFF271 at 286.856 kb on + strand, within GFF271 at 287.044 kb on + strand, within GFF271 at 287.044 kb on + strand, within GFF271 at 287.240 kb on + strand at 287.240 kb on + strand at 287.378 kb on + strand at 287.403 kb on - strand at 287.450 kb on + strand, within GFF272 at 287.451 kb on - strand, within GFF272 at 287.451 kb on - strand, within GFF272 at 287.456 kb on + strand, within GFF272 at 287.457 kb on - strand, within GFF272 at 287.457 kb on - strand, within GFF272 at 287.457 kb on - strand, within GFF272
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 284,431 + GFF269 0.44 -0.0 284,431 + GFF269 0.44 -0.3 284,431 + GFF269 0.44 -0.1 284,431 + GFF269 0.44 -0.8 284,431 + GFF269 0.44 -1.5 284,432 - GFF269 0.44 -0.3 284,432 - GFF269 0.44 -0.1 284,432 - GFF269 0.44 +2.4 284,432 - GFF269 0.44 +0.6 284,432 - GFF269 0.44 +0.7 284,432 - GFF269 0.44 +1.1 284,432 - GFF269 0.44 +0.3 284,551 + GFF269 0.54 -0.1 284,551 + GFF269 0.54 -0.1 284,659 + GFF269 0.63 +0.2 284,659 + GFF269 0.63 -0.5 284,659 + GFF269 0.63 -0.1 284,659 + GFF269 0.63 +0.8 284,749 + GFF269 0.71 -0.2 284,899 + GFF269 0.84 +0.1 284,900 - GFF269 0.84 +0.7 285,185 + -0.2 285,343 + -1.6 285,343 + -0.6 285,343 + -0.2 285,343 + +0.8 285,343 + +0.9 285,344 - -0.0 285,344 - +0.7 285,578 - GFF270 0.26 +0.4 285,638 - GFF270 0.31 +1.1 285,655 + GFF270 0.32 +0.2 286,091 - GFF270 0.69 -0.5 286,123 + GFF270 0.71 -0.0 286,123 + GFF270 0.71 +0.9 286,123 + GFF270 0.71 -1.0 286,123 + GFF270 0.71 +1.1 286,123 + GFF270 0.71 +0.1 286,123 + GFF270 0.71 -1.0 286,222 + GFF270 0.79 +0.2 286,222 + GFF270 0.79 -0.2 286,363 + +0.2 286,363 + -0.5 286,418 + +1.0 286,766 + GFF271 0.11 -0.0 286,766 + GFF271 0.11 -0.4 286,766 + GFF271 0.11 +0.5 286,767 - GFF271 0.11 +0.3 286,827 - GFF271 0.22 -0.3 286,832 + GFF271 0.23 +0.0 286,856 + GFF271 0.27 -0.1 287,044 + GFF271 0.60 +0.0 287,044 + GFF271 0.60 +0.1 287,240 + -1.6 287,240 + -0.9 287,378 + -0.2 287,403 - -0.3 287,450 + GFF272 0.15 +0.5 287,451 - GFF272 0.15 +0.4 287,451 - GFF272 0.15 +1.3 287,456 + GFF272 0.15 +0.7 287,457 - GFF272 0.15 -0.3 287,457 - GFF272 0.15 +0.1 287,457 - GFF272 0.15 +0.6
Or see this region's nucleotide sequence