Strain Fitness in Xanthobacter sp. DMC5 around GFF2687

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2685 and GFF2686 are separated by 11 nucleotidesGFF2686 and GFF2687 are separated by 79 nucleotidesGFF2687 and GFF2688 are separated by 50 nucleotides GFF2685 - dTDP-L-rhamnose 4-epimerase, at 369,411 to 370,508 GFF2685 GFF2686 - hypothetical protein, at 370,520 to 370,783 GFF2686 GFF2687 - hypothetical protein, at 370,863 to 372,602 GFF2687 GFF2688 - hypothetical protein, at 372,653 to 373,720 GFF2688 Position (kb) 370 371 372 373Strain fitness (log2 ratio) -2 -1 0 1 2at 369.886 kb on + strand, within GFF2685at 369.887 kb on - strand, within GFF2685at 369.926 kb on - strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.965 kb on - strand, within GFF2685at 369.965 kb on - strand, within GFF2685at 369.965 kb on - strand, within GFF2685at 369.979 kb on + strand, within GFF2685at 369.979 kb on + strand, within GFF2685at 369.980 kb on - strand, within GFF2685at 370.123 kb on + strand, within GFF2685at 370.124 kb on - strand, within GFF2685at 370.138 kb on + strand, within GFF2685at 370.138 kb on + strand, within GFF2685at 370.138 kb on + strand, within GFF2685at 370.138 kb on + strand, within GFF2685at 370.138 kb on + strand, within GFF2685at 370.139 kb on - strand, within GFF2685at 370.139 kb on - strand, within GFF2685at 370.139 kb on - strand, within GFF2685at 370.139 kb on - strand, within GFF2685at 370.139 kb on - strand, within GFF2685at 370.234 kb on + strand, within GFF2685at 370.235 kb on - strand, within GFF2685at 370.235 kb on - strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.420 kb on - strandat 370.420 kb on - strandat 370.691 kb on - strand, within GFF2686at 370.996 kb on + strandat 370.996 kb on + strandat 370.996 kb on + strandat 370.996 kb on + strandat 370.997 kb on - strandat 371.088 kb on + strand, within GFF2687at 371.088 kb on + strand, within GFF2687at 371.089 kb on - strand, within GFF2687at 371.089 kb on - strand, within GFF2687at 371.115 kb on + strand, within GFF2687at 371.413 kb on + strand, within GFF2687at 371.413 kb on + strand, within GFF2687at 371.413 kb on + strand, within GFF2687at 371.413 kb on + strand, within GFF2687at 371.414 kb on - strand, within GFF2687at 371.459 kb on + strand, within GFF2687at 371.582 kb on - strand, within GFF2687at 371.778 kb on + strand, within GFF2687at 371.778 kb on + strand, within GFF2687at 371.778 kb on + strand, within GFF2687at 371.779 kb on - strand, within GFF2687at 371.779 kb on - strand, within GFF2687at 371.779 kb on - strand, within GFF2687at 371.779 kb on - strand, within GFF2687at 371.779 kb on - strand, within GFF2687at 371.779 kb on - strand, within GFF2687at 371.779 kb on - strand, within GFF2687at 372.193 kb on + strand, within GFF2687at 372.194 kb on - strand, within GFF2687at 372.194 kb on - strand, within GFF2687at 372.205 kb on + strand, within GFF2687at 372.214 kb on + strand, within GFF2687at 372.214 kb on + strand, within GFF2687at 372.215 kb on - strand, within GFF2687at 372.215 kb on - strand, within GFF2687at 372.224 kb on - strand, within GFF2687at 372.224 kb on - strand, within GFF2687at 372.592 kb on + strandat 372.592 kb on + strandat 372.593 kb on - strandat 372.593 kb on - strandat 372.593 kb on - strandat 372.593 kb on - strandat 372.593 kb on - strandat 372.593 kb on - strandat 372.593 kb on - strandat 372.593 kb on - strandat 372.593 kb on - strandat 372.605 kb on + strandat 372.605 kb on + strandat 372.605 kb on + strandat 372.606 kb on - strandat 372.606 kb on - strandat 372.654 kb on + strandat 372.654 kb on + strandat 372.670 kb on + strandat 372.670 kb on + strandat 372.670 kb on + strandat 372.671 kb on - strandat 372.678 kb on + strandat 372.819 kb on + strand, within GFF2688at 372.819 kb on + strand, within GFF2688at 372.819 kb on + strand, within GFF2688at 372.820 kb on - strand, within GFF2688at 372.820 kb on - strand, within GFF2688at 372.820 kb on - strand, within GFF2688at 372.820 kb on - strand, within GFF2688at 372.820 kb on - strand, within GFF2688at 372.820 kb on - strand, within GFF2688at 372.820 kb on - strand, within GFF2688at 372.820 kb on - strand, within GFF2688at 372.976 kb on - strand, within GFF2688at 373.068 kb on + strand, within GFF2688at 373.068 kb on + strand, within GFF2688at 373.068 kb on + strand, within GFF2688at 373.069 kb on - strand, within GFF2688at 373.069 kb on - strand, within GFF2688at 373.069 kb on - strand, within GFF2688at 373.069 kb on - strand, within GFF2688at 373.111 kb on + strand, within GFF2688at 373.111 kb on + strand, within GFF2688at 373.112 kb on - strand, within GFF2688at 373.257 kb on + strand, within GFF2688at 373.257 kb on + strand, within GFF2688at 373.257 kb on + strand, within GFF2688at 373.257 kb on + strand, within GFF2688at 373.258 kb on - strand, within GFF2688at 373.258 kb on - strand, within GFF2688at 373.415 kb on - strand, within GFF2688at 373.450 kb on - strand, within GFF2688at 373.545 kb on - strand, within GFF2688at 373.567 kb on + strand, within GFF2688

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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369,886 + GFF2685 0.43 +0.2
369,887 - GFF2685 0.43 +0.1
369,926 - GFF2685 0.47 -0.2
369,964 + GFF2685 0.50 +0.3
369,964 + GFF2685 0.50 +0.0
369,964 + GFF2685 0.50 +0.1
369,964 + GFF2685 0.50 -1.7
369,964 + GFF2685 0.50 +0.9
369,964 + GFF2685 0.50 +0.2
369,964 + GFF2685 0.50 -0.5
369,964 + GFF2685 0.50 -0.4
369,965 - GFF2685 0.50 -0.3
369,965 - GFF2685 0.50 -0.6
369,965 - GFF2685 0.50 -0.7
369,979 + GFF2685 0.52 -0.6
369,979 + GFF2685 0.52 -0.0
369,980 - GFF2685 0.52 +0.8
370,123 + GFF2685 0.65 +1.1
370,124 - GFF2685 0.65 -0.1
370,138 + GFF2685 0.66 +0.3
370,138 + GFF2685 0.66 +0.3
370,138 + GFF2685 0.66 -0.0
370,138 + GFF2685 0.66 -0.6
370,138 + GFF2685 0.66 +1.3
370,139 - GFF2685 0.66 -0.0
370,139 - GFF2685 0.66 +0.3
370,139 - GFF2685 0.66 +0.0
370,139 - GFF2685 0.66 +0.1
370,139 - GFF2685 0.66 -0.0
370,234 + GFF2685 0.75 +0.2
370,235 - GFF2685 0.75 -0.5
370,235 - GFF2685 0.75 +0.2
370,249 + GFF2685 0.76 +0.4
370,249 + GFF2685 0.76 -0.8
370,249 + GFF2685 0.76 -0.2
370,249 + GFF2685 0.76 -0.3
370,249 + GFF2685 0.76 -0.1
370,249 + GFF2685 0.76 -0.6
370,249 + GFF2685 0.76 +0.3
370,249 + GFF2685 0.76 -0.5
370,249 + GFF2685 0.76 -0.1
370,249 + GFF2685 0.76 +0.3
370,249 + GFF2685 0.76 +0.6
370,249 + GFF2685 0.76 +0.5
370,250 - GFF2685 0.76 -1.4
370,250 - GFF2685 0.76 +0.5
370,250 - GFF2685 0.76 -0.5
370,250 - GFF2685 0.76 -0.4
370,250 - GFF2685 0.76 -0.3
370,250 - GFF2685 0.76 -1.2
370,250 - GFF2685 0.76 -1.4
370,250 - GFF2685 0.76 +0.2
370,250 - GFF2685 0.76 -0.6
370,420 - +0.3
370,420 - +0.5
370,691 - GFF2686 0.65 -1.2
370,996 + -1.3
370,996 + +0.5
370,996 + +0.6
370,996 + -0.1
370,997 - -0.8
371,088 + GFF2687 0.13 +0.0
371,088 + GFF2687 0.13 -0.4
371,089 - GFF2687 0.13 -0.4
371,089 - GFF2687 0.13 -0.6
371,115 + GFF2687 0.14 +0.4
371,413 + GFF2687 0.32 -1.0
371,413 + GFF2687 0.32 +0.5
371,413 + GFF2687 0.32 -0.1
371,413 + GFF2687 0.32 -0.6
371,414 - GFF2687 0.32 -1.9
371,459 + GFF2687 0.34 -0.2
371,582 - GFF2687 0.41 -0.3
371,778 + GFF2687 0.53 -0.8
371,778 + GFF2687 0.53 +0.2
371,778 + GFF2687 0.53 -0.8
371,779 - GFF2687 0.53 +0.2
371,779 - GFF2687 0.53 +0.6
371,779 - GFF2687 0.53 -0.2
371,779 - GFF2687 0.53 -0.2
371,779 - GFF2687 0.53 -1.0
371,779 - GFF2687 0.53 +1.2
371,779 - GFF2687 0.53 +0.5
372,193 + GFF2687 0.76 +0.7
372,194 - GFF2687 0.76 -0.1
372,194 - GFF2687 0.76 -0.8
372,205 + GFF2687 0.77 +0.0
372,214 + GFF2687 0.78 +0.3
372,214 + GFF2687 0.78 +0.6
372,215 - GFF2687 0.78 -1.0
372,215 - GFF2687 0.78 -0.7
372,224 - GFF2687 0.78 -0.6
372,224 - GFF2687 0.78 +0.5
372,592 + -0.5
372,592 + +0.2
372,593 - +0.2
372,593 - +1.2
372,593 - +0.1
372,593 - +0.7
372,593 - -0.1
372,593 - +0.2
372,593 - -0.4
372,593 - -1.3
372,593 - -0.7
372,605 + -1.0
372,605 + +0.1
372,605 + +0.4
372,606 - +0.3
372,606 - -0.8
372,654 + +0.3
372,654 + -0.4
372,670 + +0.4
372,670 + -2.7
372,670 + +0.0
372,671 - +0.8
372,678 + -1.3
372,819 + GFF2688 0.16 -0.9
372,819 + GFF2688 0.16 +0.7
372,819 + GFF2688 0.16 +0.8
372,820 - GFF2688 0.16 -0.6
372,820 - GFF2688 0.16 -0.5
372,820 - GFF2688 0.16 -0.8
372,820 - GFF2688 0.16 -0.2
372,820 - GFF2688 0.16 -0.8
372,820 - GFF2688 0.16 -1.1
372,820 - GFF2688 0.16 -0.7
372,820 - GFF2688 0.16 -1.1
372,976 - GFF2688 0.30 -0.7
373,068 + GFF2688 0.39 +0.5
373,068 + GFF2688 0.39 +0.6
373,068 + GFF2688 0.39 +1.2
373,069 - GFF2688 0.39 -1.3
373,069 - GFF2688 0.39 -0.5
373,069 - GFF2688 0.39 -0.9
373,069 - GFF2688 0.39 -0.8
373,111 + GFF2688 0.43 -0.6
373,111 + GFF2688 0.43 +1.0
373,112 - GFF2688 0.43 -0.4
373,257 + GFF2688 0.57 -0.3
373,257 + GFF2688 0.57 +1.8
373,257 + GFF2688 0.57 -0.4
373,257 + GFF2688 0.57 -0.1
373,258 - GFF2688 0.57 +0.3
373,258 - GFF2688 0.57 -1.0
373,415 - GFF2688 0.71 -0.1
373,450 - GFF2688 0.75 +0.8
373,545 - GFF2688 0.84 +0.5
373,567 + GFF2688 0.86 +0.2

Or see this region's nucleotide sequence