Strain Fitness in Xanthobacter sp. DMC5 around GFF2682

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2681 and GFF2682 overlap by 4 nucleotidesGFF2682 and GFF2683 overlap by 19 nucleotides GFF2681 - hypothetical protein, at 364,786 to 365,895 GFF2681 GFF2682 - D-inositol-3-phosphate glycosyltransferase, at 365,892 to 367,010 GFF2682 GFF2683 - Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase, at 366,992 to 368,287 GFF2683 Position (kb) 365 366 367 368Strain fitness (log2 ratio) -2 -1 0 1 2at 364.979 kb on + strand, within GFF2681at 364.979 kb on + strand, within GFF2681at 364.979 kb on + strand, within GFF2681at 364.979 kb on + strand, within GFF2681at 364.979 kb on + strand, within GFF2681at 364.980 kb on - strand, within GFF2681at 364.980 kb on - strand, within GFF2681at 364.980 kb on - strand, within GFF2681at 364.980 kb on - strand, within GFF2681at 364.980 kb on - strand, within GFF2681at 365.099 kb on + strand, within GFF2681at 365.100 kb on - strand, within GFF2681at 365.100 kb on - strand, within GFF2681at 365.100 kb on - strand, within GFF2681at 365.103 kb on - strand, within GFF2681at 365.180 kb on + strand, within GFF2681at 365.192 kb on + strand, within GFF2681at 365.192 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.238 kb on - strand, within GFF2681at 365.238 kb on - strand, within GFF2681at 365.238 kb on - strand, within GFF2681at 365.238 kb on - strand, within GFF2681at 365.238 kb on - strand, within GFF2681at 365.282 kb on + strand, within GFF2681at 365.282 kb on + strand, within GFF2681at 365.282 kb on + strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.435 kb on + strand, within GFF2681at 365.435 kb on + strand, within GFF2681at 365.435 kb on + strand, within GFF2681at 365.436 kb on - strand, within GFF2681at 365.436 kb on - strand, within GFF2681at 365.436 kb on - strand, within GFF2681at 365.477 kb on + strand, within GFF2681at 365.478 kb on - strand, within GFF2681at 365.536 kb on - strand, within GFF2681at 365.699 kb on + strand, within GFF2681at 365.703 kb on - strand, within GFF2681at 365.882 kb on + strandat 365.895 kb on + strandat 365.896 kb on - strandat 365.896 kb on - strandat 365.896 kb on - strandat 365.951 kb on - strandat 366.205 kb on + strand, within GFF2682at 366.206 kb on - strand, within GFF2682at 366.244 kb on + strand, within GFF2682at 366.244 kb on + strand, within GFF2682at 366.244 kb on + strand, within GFF2682at 366.245 kb on - strand, within GFF2682at 366.245 kb on - strand, within GFF2682at 366.506 kb on - strand, within GFF2682at 366.910 kb on - strandat 366.910 kb on - strandat 366.910 kb on - strandat 366.910 kb on - strandat 366.910 kb on - strandat 366.949 kb on + strandat 366.950 kb on - strandat 366.950 kb on - strandat 367.083 kb on + strandat 367.083 kb on + strandat 367.083 kb on + strandat 367.084 kb on - strandat 367.084 kb on - strandat 367.158 kb on + strand, within GFF2683at 367.296 kb on + strand, within GFF2683at 367.296 kb on + strand, within GFF2683at 367.297 kb on - strand, within GFF2683at 367.297 kb on - strand, within GFF2683at 367.474 kb on + strand, within GFF2683at 367.536 kb on + strand, within GFF2683at 367.537 kb on - strand, within GFF2683at 367.542 kb on + strand, within GFF2683at 367.543 kb on - strand, within GFF2683at 367.608 kb on + strand, within GFF2683at 367.608 kb on + strand, within GFF2683at 367.609 kb on - strand, within GFF2683at 367.650 kb on + strand, within GFF2683at 367.651 kb on - strand, within GFF2683at 367.651 kb on - strand, within GFF2683at 367.827 kb on + strand, within GFF2683at 367.828 kb on - strand, within GFF2683at 367.904 kb on + strand, within GFF2683at 367.904 kb on + strand, within GFF2683at 367.904 kb on + strand, within GFF2683at 367.905 kb on - strand, within GFF2683at 367.905 kb on - strand, within GFF2683at 367.905 kb on - strand, within GFF2683at 367.905 kb on - strand, within GFF2683at 367.905 kb on - strand, within GFF2683at 367.924 kb on + strand, within GFF2683at 367.924 kb on + strand, within GFF2683at 367.925 kb on - strand, within GFF2683

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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364,979 + GFF2681 0.17 -0.6
364,979 + GFF2681 0.17 -0.5
364,979 + GFF2681 0.17 +1.2
364,979 + GFF2681 0.17 -1.1
364,979 + GFF2681 0.17 -0.9
364,980 - GFF2681 0.17 -0.5
364,980 - GFF2681 0.17 -0.5
364,980 - GFF2681 0.17 -0.8
364,980 - GFF2681 0.17 +0.6
364,980 - GFF2681 0.17 -1.4
365,099 + GFF2681 0.28 +1.3
365,100 - GFF2681 0.28 +0.7
365,100 - GFF2681 0.28 -0.7
365,100 - GFF2681 0.28 +0.0
365,103 - GFF2681 0.29 +0.1
365,180 + GFF2681 0.35 +0.3
365,192 + GFF2681 0.37 +0.1
365,192 + GFF2681 0.37 -0.2
365,237 + GFF2681 0.41 -0.4
365,237 + GFF2681 0.41 +0.3
365,237 + GFF2681 0.41 -0.2
365,237 + GFF2681 0.41 -0.2
365,237 + GFF2681 0.41 -1.1
365,237 + GFF2681 0.41 -0.2
365,237 + GFF2681 0.41 -0.5
365,237 + GFF2681 0.41 -1.8
365,237 + GFF2681 0.41 +0.3
365,237 + GFF2681 0.41 -0.1
365,238 - GFF2681 0.41 -1.7
365,238 - GFF2681 0.41 +0.3
365,238 - GFF2681 0.41 -0.7
365,238 - GFF2681 0.41 +0.3
365,238 - GFF2681 0.41 -0.1
365,282 + GFF2681 0.45 -0.8
365,282 + GFF2681 0.45 -1.0
365,282 + GFF2681 0.45 +0.2
365,283 - GFF2681 0.45 -0.1
365,283 - GFF2681 0.45 -0.2
365,283 - GFF2681 0.45 -0.4
365,283 - GFF2681 0.45 -0.4
365,283 - GFF2681 0.45 -0.8
365,283 - GFF2681 0.45 -1.2
365,283 - GFF2681 0.45 +0.3
365,283 - GFF2681 0.45 -0.1
365,435 + GFF2681 0.58 +0.0
365,435 + GFF2681 0.58 -0.0
365,435 + GFF2681 0.58 +0.6
365,436 - GFF2681 0.59 +0.8
365,436 - GFF2681 0.59 -0.4
365,436 - GFF2681 0.59 +0.2
365,477 + GFF2681 0.62 +0.5
365,478 - GFF2681 0.62 +0.1
365,536 - GFF2681 0.68 +0.2
365,699 + GFF2681 0.82 -0.2
365,703 - GFF2681 0.83 -0.3
365,882 + -0.7
365,895 + -1.0
365,896 - -0.2
365,896 - +0.2
365,896 - -0.4
365,951 - -0.9
366,205 + GFF2682 0.28 +0.6
366,206 - GFF2682 0.28 -1.7
366,244 + GFF2682 0.31 -0.5
366,244 + GFF2682 0.31 +1.2
366,244 + GFF2682 0.31 +0.0
366,245 - GFF2682 0.32 -0.1
366,245 - GFF2682 0.32 +0.1
366,506 - GFF2682 0.55 +0.3
366,910 - +0.8
366,910 - -0.4
366,910 - +0.5
366,910 - -1.2
366,910 - +0.8
366,949 + -0.1
366,950 - -1.2
366,950 - +0.7
367,083 + +0.1
367,083 + +1.4
367,083 + +0.1
367,084 - +0.2
367,084 - -0.6
367,158 + GFF2683 0.13 +2.0
367,296 + GFF2683 0.23 -0.1
367,296 + GFF2683 0.23 -0.1
367,297 - GFF2683 0.24 +0.3
367,297 - GFF2683 0.24 -0.6
367,474 + GFF2683 0.37 -1.0
367,536 + GFF2683 0.42 -0.4
367,537 - GFF2683 0.42 -0.6
367,542 + GFF2683 0.42 -0.1
367,543 - GFF2683 0.43 +0.3
367,608 + GFF2683 0.48 -0.9
367,608 + GFF2683 0.48 +0.1
367,609 - GFF2683 0.48 +0.5
367,650 + GFF2683 0.51 -0.5
367,651 - GFF2683 0.51 -0.6
367,651 - GFF2683 0.51 -0.6
367,827 + GFF2683 0.64 +0.2
367,828 - GFF2683 0.65 -0.4
367,904 + GFF2683 0.70 +0.6
367,904 + GFF2683 0.70 -0.6
367,904 + GFF2683 0.70 -0.0
367,905 - GFF2683 0.70 +0.6
367,905 - GFF2683 0.70 +0.1
367,905 - GFF2683 0.70 +0.1
367,905 - GFF2683 0.70 +0.5
367,905 - GFF2683 0.70 +0.4
367,924 + GFF2683 0.72 +0.2
367,924 + GFF2683 0.72 -0.3
367,925 - GFF2683 0.72 -0.7

Or see this region's nucleotide sequence