Strain Fitness in Xanthobacter sp. DMC5 around GFF2677

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2675 and GFF2676 are separated by 13 nucleotidesGFF2676 and GFF2677 overlap by 4 nucleotidesGFF2677 and GFF2678 are separated by 5 nucleotides GFF2675 - Phosphoserine phosphatase 1, at 359,246 to 359,842 GFF2675 GFF2676 - tRNA U34 carboxymethyltransferase, at 359,856 to 360,614 GFF2676 GFF2677 - hypothetical protein, at 360,611 to 361,537 GFF2677 GFF2678 - UDP-glucose 4-epimerase, at 361,543 to 362,589 GFF2678 Position (kb) 360 361 362Strain fitness (log2 ratio) -2 -1 0 1 2at 359.968 kb on - strand, within GFF2676at 359.968 kb on - strand, within GFF2676at 360.060 kb on + strand, within GFF2676at 360.060 kb on + strand, within GFF2676at 360.060 kb on + strand, within GFF2676at 360.060 kb on + strand, within GFF2676at 360.060 kb on + strand, within GFF2676at 360.061 kb on - strand, within GFF2676at 360.061 kb on - strand, within GFF2676at 360.061 kb on - strand, within GFF2676at 360.061 kb on - strand, within GFF2676at 360.123 kb on + strand, within GFF2676at 360.123 kb on + strand, within GFF2676at 360.123 kb on + strand, within GFF2676at 360.124 kb on - strand, within GFF2676at 360.124 kb on - strand, within GFF2676at 360.250 kb on - strand, within GFF2676at 360.250 kb on - strand, within GFF2676at 360.250 kb on - strand, within GFF2676at 360.408 kb on + strand, within GFF2676at 360.408 kb on + strand, within GFF2676at 360.409 kb on - strand, within GFF2676at 360.409 kb on - strand, within GFF2676at 360.409 kb on - strand, within GFF2676at 360.439 kb on - strand, within GFF2676at 360.543 kb on + strandat 360.543 kb on + strandat 360.543 kb on + strandat 360.543 kb on + strandat 360.543 kb on + strandat 360.543 kb on + strandat 360.543 kb on + strandat 360.544 kb on - strandat 360.544 kb on - strandat 360.544 kb on - strandat 360.544 kb on - strandat 360.544 kb on - strandat 360.544 kb on - strandat 360.544 kb on - strandat 360.588 kb on + strandat 360.589 kb on - strandat 360.692 kb on + strandat 361.015 kb on + strand, within GFF2677at 361.043 kb on + strand, within GFF2677at 361.043 kb on + strand, within GFF2677at 361.043 kb on + strand, within GFF2677at 361.044 kb on - strand, within GFF2677at 361.112 kb on + strand, within GFF2677at 361.113 kb on - strand, within GFF2677at 361.113 kb on - strand, within GFF2677at 361.113 kb on - strand, within GFF2677at 361.113 kb on - strand, within GFF2677at 361.113 kb on - strand, within GFF2677at 361.113 kb on - strand, within GFF2677at 361.115 kb on + strand, within GFF2677at 361.115 kb on + strand, within GFF2677at 361.115 kb on + strand, within GFF2677at 361.115 kb on + strand, within GFF2677at 361.345 kb on + strand, within GFF2677at 361.345 kb on + strand, within GFF2677at 361.345 kb on + strand, within GFF2677at 361.345 kb on + strand, within GFF2677at 361.346 kb on - strand, within GFF2677at 361.346 kb on - strand, within GFF2677at 361.346 kb on - strand, within GFF2677at 361.346 kb on - strand, within GFF2677at 361.346 kb on - strand, within GFF2677at 361.346 kb on - strand, within GFF2677at 361.346 kb on - strand, within GFF2677at 361.522 kb on + strandat 361.523 kb on - strandat 361.523 kb on - strandat 361.536 kb on - strandat 361.536 kb on - strandat 361.544 kb on + strandat 361.544 kb on + strandat 361.545 kb on - strandat 361.565 kb on + strandat 361.713 kb on + strand, within GFF2678at 361.713 kb on + strand, within GFF2678at 361.714 kb on - strand, within GFF2678at 361.714 kb on - strand, within GFF2678at 361.716 kb on + strand, within GFF2678at 361.717 kb on - strand, within GFF2678at 361.913 kb on + strand, within GFF2678at 361.913 kb on + strand, within GFF2678at 361.913 kb on + strand, within GFF2678at 361.913 kb on + strand, within GFF2678at 361.914 kb on - strand, within GFF2678at 361.914 kb on - strand, within GFF2678at 361.914 kb on - strand, within GFF2678at 361.914 kb on - strand, within GFF2678at 361.946 kb on + strand, within GFF2678at 361.946 kb on + strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 362.030 kb on + strand, within GFF2678at 362.031 kb on - strand, within GFF2678at 362.031 kb on - strand, within GFF2678at 362.031 kb on - strand, within GFF2678at 362.082 kb on - strand, within GFF2678at 362.112 kb on + strand, within GFF2678at 362.112 kb on + strand, within GFF2678at 362.123 kb on + strand, within GFF2678at 362.123 kb on + strand, within GFF2678at 362.124 kb on - strand, within GFF2678at 362.162 kb on + strand, within GFF2678at 362.162 kb on + strand, within GFF2678at 362.163 kb on - strand, within GFF2678at 362.198 kb on + strand, within GFF2678at 362.199 kb on - strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.293 kb on - strand, within GFF2678at 362.293 kb on - strand, within GFF2678at 362.293 kb on - strand, within GFF2678at 362.293 kb on - strand, within GFF2678at 362.312 kb on + strand, within GFF2678at 362.351 kb on + strand, within GFF2678at 362.351 kb on + strand, within GFF2678at 362.351 kb on + strand, within GFF2678at 362.352 kb on - strand, within GFF2678at 362.352 kb on - strand, within GFF2678

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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359,968 - GFF2676 0.15 +0.5
359,968 - GFF2676 0.15 +0.0
360,060 + GFF2676 0.27 -0.6
360,060 + GFF2676 0.27 -0.1
360,060 + GFF2676 0.27 -0.6
360,060 + GFF2676 0.27 -0.2
360,060 + GFF2676 0.27 +0.2
360,061 - GFF2676 0.27 +0.7
360,061 - GFF2676 0.27 -0.7
360,061 - GFF2676 0.27 -0.9
360,061 - GFF2676 0.27 +0.7
360,123 + GFF2676 0.35 -0.6
360,123 + GFF2676 0.35 -0.2
360,123 + GFF2676 0.35 -0.8
360,124 - GFF2676 0.35 -0.1
360,124 - GFF2676 0.35 +0.2
360,250 - GFF2676 0.52 +1.0
360,250 - GFF2676 0.52 -0.3
360,250 - GFF2676 0.52 -0.4
360,408 + GFF2676 0.73 +0.2
360,408 + GFF2676 0.73 +0.1
360,409 - GFF2676 0.73 -0.1
360,409 - GFF2676 0.73 +1.3
360,409 - GFF2676 0.73 -0.3
360,439 - GFF2676 0.77 -0.1
360,543 + -0.1
360,543 + -0.2
360,543 + +0.5
360,543 + -0.6
360,543 + -1.0
360,543 + -0.2
360,543 + +0.5
360,544 - +0.3
360,544 - -0.0
360,544 - +0.2
360,544 - -0.8
360,544 - -0.7
360,544 - -0.6
360,544 - -0.3
360,588 + +0.1
360,589 - -0.1
360,692 + -0.8
361,015 + GFF2677 0.44 +0.2
361,043 + GFF2677 0.47 +0.2
361,043 + GFF2677 0.47 -0.9
361,043 + GFF2677 0.47 +0.6
361,044 - GFF2677 0.47 -0.2
361,112 + GFF2677 0.54 +0.4
361,113 - GFF2677 0.54 -0.0
361,113 - GFF2677 0.54 -0.2
361,113 - GFF2677 0.54 -0.0
361,113 - GFF2677 0.54 +0.3
361,113 - GFF2677 0.54 -0.0
361,113 - GFF2677 0.54 -0.3
361,115 + GFF2677 0.54 +0.3
361,115 + GFF2677 0.54 -0.0
361,115 + GFF2677 0.54 +0.5
361,115 + GFF2677 0.54 -1.2
361,345 + GFF2677 0.79 -0.2
361,345 + GFF2677 0.79 -1.4
361,345 + GFF2677 0.79 +0.1
361,345 + GFF2677 0.79 +0.4
361,346 - GFF2677 0.79 -0.2
361,346 - GFF2677 0.79 -1.2
361,346 - GFF2677 0.79 +0.5
361,346 - GFF2677 0.79 +0.2
361,346 - GFF2677 0.79 +0.1
361,346 - GFF2677 0.79 +0.1
361,346 - GFF2677 0.79 -0.4
361,522 + -0.8
361,523 - -0.5
361,523 - +0.9
361,536 - -0.7
361,536 - +0.9
361,544 + -0.4
361,544 + +0.5
361,545 - -0.4
361,565 + -0.4
361,713 + GFF2678 0.16 +0.2
361,713 + GFF2678 0.16 +0.4
361,714 - GFF2678 0.16 +0.3
361,714 - GFF2678 0.16 +0.3
361,716 + GFF2678 0.17 -0.3
361,717 - GFF2678 0.17 +1.9
361,913 + GFF2678 0.35 -0.3
361,913 + GFF2678 0.35 +0.4
361,913 + GFF2678 0.35 +0.2
361,913 + GFF2678 0.35 -1.8
361,914 - GFF2678 0.35 +0.3
361,914 - GFF2678 0.35 -0.2
361,914 - GFF2678 0.35 +0.2
361,914 - GFF2678 0.35 -1.0
361,946 + GFF2678 0.38 -0.7
361,946 + GFF2678 0.38 -0.5
361,947 - GFF2678 0.39 +0.5
361,947 - GFF2678 0.39 -0.4
361,947 - GFF2678 0.39 +1.2
361,947 - GFF2678 0.39 +0.2
361,947 - GFF2678 0.39 -0.1
361,947 - GFF2678 0.39 -0.3
361,947 - GFF2678 0.39 -0.5
362,030 + GFF2678 0.47 -0.8
362,031 - GFF2678 0.47 +0.0
362,031 - GFF2678 0.47 -0.3
362,031 - GFF2678 0.47 -0.5
362,082 - GFF2678 0.51 -0.1
362,112 + GFF2678 0.54 +1.4
362,112 + GFF2678 0.54 +0.0
362,123 + GFF2678 0.55 +0.5
362,123 + GFF2678 0.55 +0.1
362,124 - GFF2678 0.55 +0.1
362,162 + GFF2678 0.59 +0.2
362,162 + GFF2678 0.59 -0.1
362,163 - GFF2678 0.59 +0.6
362,198 + GFF2678 0.63 +0.0
362,199 - GFF2678 0.63 +0.4
362,292 + GFF2678 0.72 -0.1
362,292 + GFF2678 0.72 -0.5
362,292 + GFF2678 0.72 -0.3
362,292 + GFF2678 0.72 +0.1
362,292 + GFF2678 0.72 -0.1
362,292 + GFF2678 0.72 +0.5
362,292 + GFF2678 0.72 +0.7
362,293 - GFF2678 0.72 -0.2
362,293 - GFF2678 0.72 +0.5
362,293 - GFF2678 0.72 -0.1
362,293 - GFF2678 0.72 +0.6
362,312 + GFF2678 0.73 +0.6
362,351 + GFF2678 0.77 -0.6
362,351 + GFF2678 0.77 +0.4
362,351 + GFF2678 0.77 -1.2
362,352 - GFF2678 0.77 -0.2
362,352 - GFF2678 0.77 +0.6

Or see this region's nucleotide sequence