Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2672 and GFF2673 overlap by 4 nucleotides GFF2673 and GFF2674 are separated by 37 nucleotides GFF2674 and GFF2675 overlap by 4 nucleotides GFF2675 and GFF2676 are separated by 13 nucleotides
GFF2672 - hypothetical protein, at 357,198 to 357,530
GFF2672
GFF2673 - hypothetical protein, at 357,527 to 358,102
GFF2673
GFF2674 - Inositol-3-phosphate synthase, at 358,140 to 359,249
GFF2674
GFF2675 - Phosphoserine phosphatase 1, at 359,246 to 359,842
GFF2675
GFF2676 - tRNA U34 carboxymethyltransferase, at 359,856 to 360,614
GFF2676
Position (kb) 358
359
360 Strain fitness (log2 ratio) -2
-1
0
1 at 357.402 kb on + strand, within GFF2672 at 357.403 kb on - strand, within GFF2672 at 357.403 kb on - strand, within GFF2672 at 357.604 kb on + strand, within GFF2673 at 357.604 kb on + strand, within GFF2673 at 357.604 kb on + strand, within GFF2673 at 357.605 kb on - strand, within GFF2673 at 357.681 kb on + strand, within GFF2673 at 357.852 kb on + strand, within GFF2673 at 357.852 kb on + strand, within GFF2673 at 357.985 kb on + strand, within GFF2673 at 357.986 kb on - strand, within GFF2673 at 357.986 kb on - strand, within GFF2673 at 357.986 kb on - strand, within GFF2673 at 357.994 kb on + strand, within GFF2673 at 358.044 kb on + strand, within GFF2673 at 358.044 kb on + strand, within GFF2673 at 358.044 kb on + strand, within GFF2673 at 358.045 kb on - strand at 358.045 kb on - strand at 358.218 kb on + strand at 358.218 kb on + strand at 358.453 kb on - strand, within GFF2674 at 358.453 kb on - strand, within GFF2674 at 358.542 kb on + strand, within GFF2674 at 358.542 kb on + strand, within GFF2674 at 358.542 kb on + strand, within GFF2674 at 358.542 kb on + strand, within GFF2674 at 358.542 kb on + strand, within GFF2674 at 358.543 kb on - strand, within GFF2674 at 358.543 kb on - strand, within GFF2674 at 358.543 kb on - strand, within GFF2674 at 358.577 kb on - strand, within GFF2674 at 358.578 kb on + strand, within GFF2674 at 358.578 kb on + strand, within GFF2674 at 358.579 kb on - strand, within GFF2674 at 358.579 kb on - strand, within GFF2674 at 358.579 kb on - strand, within GFF2674 at 358.579 kb on - strand, within GFF2674 at 358.579 kb on - strand, within GFF2674 at 358.580 kb on + strand, within GFF2674 at 358.580 kb on + strand, within GFF2674 at 358.724 kb on + strand, within GFF2674 at 358.724 kb on + strand, within GFF2674 at 358.724 kb on + strand, within GFF2674 at 358.724 kb on + strand, within GFF2674 at 358.724 kb on + strand, within GFF2674 at 358.785 kb on + strand, within GFF2674 at 358.785 kb on + strand, within GFF2674 at 358.786 kb on - strand, within GFF2674 at 358.786 kb on - strand, within GFF2674 at 358.786 kb on - strand, within GFF2674 at 359.137 kb on - strand, within GFF2674 at 359.251 kb on + strand at 359.251 kb on + strand at 359.251 kb on + strand at 359.251 kb on + strand at 359.251 kb on + strand at 359.251 kb on + strand at 359.252 kb on - strand at 359.252 kb on - strand at 359.252 kb on - strand at 359.252 kb on - strand at 359.252 kb on - strand at 359.252 kb on - strand at 359.252 kb on - strand at 359.252 kb on - strand at 359.252 kb on - strand at 359.258 kb on + strand at 359.258 kb on + strand at 359.258 kb on + strand at 359.259 kb on - strand at 359.259 kb on - strand at 359.259 kb on - strand at 359.259 kb on - strand at 359.259 kb on - strand at 359.968 kb on - strand, within GFF2676 at 359.968 kb on - strand, within GFF2676 at 360.060 kb on + strand, within GFF2676 at 360.060 kb on + strand, within GFF2676 at 360.060 kb on + strand, within GFF2676 at 360.060 kb on + strand, within GFF2676 at 360.060 kb on + strand, within GFF2676 at 360.061 kb on - strand, within GFF2676 at 360.061 kb on - strand, within GFF2676 at 360.061 kb on - strand, within GFF2676 at 360.061 kb on - strand, within GFF2676 at 360.123 kb on + strand, within GFF2676 at 360.123 kb on + strand, within GFF2676 at 360.123 kb on + strand, within GFF2676 at 360.124 kb on - strand, within GFF2676 at 360.124 kb on - strand, within GFF2676
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 357,402 + GFF2672 0.61 -0.9 357,403 - GFF2672 0.62 -0.7 357,403 - GFF2672 0.62 -0.6 357,604 + GFF2673 0.13 +0.4 357,604 + GFF2673 0.13 -0.3 357,604 + GFF2673 0.13 -0.6 357,605 - GFF2673 0.14 +0.5 357,681 + GFF2673 0.27 +0.4 357,852 + GFF2673 0.56 +0.5 357,852 + GFF2673 0.56 -0.3 357,985 + GFF2673 0.80 -0.5 357,986 - GFF2673 0.80 +0.5 357,986 - GFF2673 0.80 -0.3 357,986 - GFF2673 0.80 +0.9 357,994 + GFF2673 0.81 +0.6 358,044 + GFF2673 0.90 +0.3 358,044 + GFF2673 0.90 +0.7 358,044 + GFF2673 0.90 -0.8 358,045 - -0.3 358,045 - -0.2 358,218 + +0.9 358,218 + -0.5 358,453 - GFF2674 0.28 +1.0 358,453 - GFF2674 0.28 +0.1 358,542 + GFF2674 0.36 -0.4 358,542 + GFF2674 0.36 -1.2 358,542 + GFF2674 0.36 +0.7 358,542 + GFF2674 0.36 -1.2 358,542 + GFF2674 0.36 -0.2 358,543 - GFF2674 0.36 -0.3 358,543 - GFF2674 0.36 -0.6 358,543 - GFF2674 0.36 -0.2 358,577 - GFF2674 0.39 -0.6 358,578 + GFF2674 0.39 +0.9 358,578 + GFF2674 0.39 -0.2 358,579 - GFF2674 0.40 +0.1 358,579 - GFF2674 0.40 +0.1 358,579 - GFF2674 0.40 -0.1 358,579 - GFF2674 0.40 -1.4 358,579 - GFF2674 0.40 +0.9 358,580 + GFF2674 0.40 -0.1 358,580 + GFF2674 0.40 +0.2 358,724 + GFF2674 0.53 +0.1 358,724 + GFF2674 0.53 -0.8 358,724 + GFF2674 0.53 -0.9 358,724 + GFF2674 0.53 +0.2 358,724 + GFF2674 0.53 +0.5 358,785 + GFF2674 0.58 -0.5 358,785 + GFF2674 0.58 +0.0 358,786 - GFF2674 0.58 +0.4 358,786 - GFF2674 0.58 -0.0 358,786 - GFF2674 0.58 +0.2 359,137 - GFF2674 0.90 +0.0 359,251 + -1.2 359,251 + +0.3 359,251 + -0.2 359,251 + -0.1 359,251 + -0.2 359,251 + -0.1 359,252 - +0.7 359,252 - -0.2 359,252 - +0.8 359,252 - +0.6 359,252 - +0.4 359,252 - +0.3 359,252 - -0.3 359,252 - -0.1 359,252 - +0.0 359,258 + -0.5 359,258 + -0.3 359,258 + -0.1 359,259 - -2.2 359,259 - -0.7 359,259 - -0.0 359,259 - -0.0 359,259 - +1.6 359,968 - GFF2676 0.15 +0.5 359,968 - GFF2676 0.15 +0.0 360,060 + GFF2676 0.27 -0.6 360,060 + GFF2676 0.27 -0.1 360,060 + GFF2676 0.27 -0.6 360,060 + GFF2676 0.27 -0.2 360,060 + GFF2676 0.27 +0.2 360,061 - GFF2676 0.27 +0.7 360,061 - GFF2676 0.27 -0.7 360,061 - GFF2676 0.27 -0.9 360,061 - GFF2676 0.27 +0.7 360,123 + GFF2676 0.35 -0.6 360,123 + GFF2676 0.35 -0.2 360,123 + GFF2676 0.35 -0.8 360,124 - GFF2676 0.35 -0.1 360,124 - GFF2676 0.35 +0.2
Or see this region's nucleotide sequence