Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2669 and GFF2670 are separated by 233 nucleotides GFF2670 and GFF2671 are separated by 23 nucleotides GFF2671 and GFF2672 are separated by 346 nucleotides GFF2672 and GFF2673 overlap by 4 nucleotides
GFF2669 - NADH dehydrogenase-like protein, at 353,911 to 355,206
GFF2669
GFF2670 - Protein YciE, at 355,440 to 355,949
GFF2670
GFF2671 - putative manganese catalase, at 355,973 to 356,851
GFF2671
GFF2672 - hypothetical protein, at 357,198 to 357,530
GFF2672
GFF2673 - hypothetical protein, at 357,527 to 358,102
GFF2673
Position (kb) 355
356
357 Strain fitness (log2 ratio) -2
-1
0
1 at 355.001 kb on - strand, within GFF2669 at 355.063 kb on + strand, within GFF2669 at 355.063 kb on + strand, within GFF2669 at 355.064 kb on - strand, within GFF2669 at 355.121 kb on - strand at 355.121 kb on - strand at 355.121 kb on - strand at 355.121 kb on - strand at 355.121 kb on - strand at 355.166 kb on + strand at 355.315 kb on - strand at 355.335 kb on - strand at 355.335 kb on - strand at 355.338 kb on - strand at 355.339 kb on + strand at 355.360 kb on + strand at 355.445 kb on + strand at 355.445 kb on + strand at 355.445 kb on + strand at 355.446 kb on - strand at 355.548 kb on + strand, within GFF2670 at 355.603 kb on + strand, within GFF2670 at 355.603 kb on + strand, within GFF2670 at 355.604 kb on - strand, within GFF2670 at 355.604 kb on - strand, within GFF2670 at 355.604 kb on - strand, within GFF2670 at 355.604 kb on - strand, within GFF2670 at 355.604 kb on - strand, within GFF2670 at 355.604 kb on - strand, within GFF2670 at 355.746 kb on + strand, within GFF2670 at 355.746 kb on + strand, within GFF2670 at 355.746 kb on + strand, within GFF2670 at 355.747 kb on - strand, within GFF2670 at 355.747 kb on - strand, within GFF2670 at 355.747 kb on - strand, within GFF2670 at 355.761 kb on + strand, within GFF2670 at 355.777 kb on - strand, within GFF2670 at 355.908 kb on + strand at 355.908 kb on + strand at 355.908 kb on + strand at 355.909 kb on - strand at 355.909 kb on - strand at 355.909 kb on - strand at 356.000 kb on + strand at 356.001 kb on - strand at 356.001 kb on - strand at 356.001 kb on - strand at 356.001 kb on - strand at 356.001 kb on - strand at 356.001 kb on - strand at 356.096 kb on + strand, within GFF2671 at 356.096 kb on + strand, within GFF2671 at 356.096 kb on + strand, within GFF2671 at 356.096 kb on + strand, within GFF2671 at 356.097 kb on - strand, within GFF2671 at 356.097 kb on - strand, within GFF2671 at 356.097 kb on - strand, within GFF2671 at 356.097 kb on - strand, within GFF2671 at 356.135 kb on + strand, within GFF2671 at 356.135 kb on + strand, within GFF2671 at 356.135 kb on + strand, within GFF2671 at 356.136 kb on - strand, within GFF2671 at 356.136 kb on - strand, within GFF2671 at 356.393 kb on + strand, within GFF2671 at 356.393 kb on + strand, within GFF2671 at 356.393 kb on + strand, within GFF2671 at 356.393 kb on + strand, within GFF2671 at 356.393 kb on + strand, within GFF2671 at 356.393 kb on + strand, within GFF2671 at 356.394 kb on - strand, within GFF2671 at 356.394 kb on - strand, within GFF2671 at 356.394 kb on - strand, within GFF2671 at 356.394 kb on - strand, within GFF2671 at 356.394 kb on - strand, within GFF2671 at 356.394 kb on - strand, within GFF2671 at 356.394 kb on - strand, within GFF2671 at 356.481 kb on - strand, within GFF2671 at 356.481 kb on - strand, within GFF2671 at 356.481 kb on - strand, within GFF2671 at 356.516 kb on - strand, within GFF2671 at 356.654 kb on + strand, within GFF2671 at 356.654 kb on + strand, within GFF2671 at 356.655 kb on - strand, within GFF2671 at 356.655 kb on - strand, within GFF2671 at 356.660 kb on + strand, within GFF2671 at 356.660 kb on + strand, within GFF2671 at 356.661 kb on - strand, within GFF2671 at 356.661 kb on - strand, within GFF2671 at 356.661 kb on - strand, within GFF2671 at 356.662 kb on + strand, within GFF2671 at 356.662 kb on + strand, within GFF2671 at 356.663 kb on - strand, within GFF2671 at 356.663 kb on - strand, within GFF2671 at 356.663 kb on - strand, within GFF2671 at 356.663 kb on - strand, within GFF2671 at 356.665 kb on - strand, within GFF2671 at 356.744 kb on + strand, within GFF2671 at 356.744 kb on + strand, within GFF2671 at 356.807 kb on + strand at 356.807 kb on + strand at 356.807 kb on + strand at 356.808 kb on - strand at 356.808 kb on - strand at 356.874 kb on + strand at 356.874 kb on + strand at 356.874 kb on + strand at 356.875 kb on - strand at 356.875 kb on - strand at 356.875 kb on - strand at 357.021 kb on + strand at 357.081 kb on + strand at 357.081 kb on + strand at 357.081 kb on + strand at 357.081 kb on + strand at 357.082 kb on - strand at 357.082 kb on - strand at 357.082 kb on - strand at 357.082 kb on - strand at 357.082 kb on - strand at 357.082 kb on - strand at 357.082 kb on - strand at 357.115 kb on + strand at 357.116 kb on - strand at 357.402 kb on + strand, within GFF2672 at 357.403 kb on - strand, within GFF2672 at 357.403 kb on - strand, within GFF2672 at 357.604 kb on + strand, within GFF2673 at 357.604 kb on + strand, within GFF2673 at 357.604 kb on + strand, within GFF2673 at 357.605 kb on - strand, within GFF2673 at 357.681 kb on + strand, within GFF2673
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 355,001 - GFF2669 0.84 +0.5 355,063 + GFF2669 0.89 -0.4 355,063 + GFF2669 0.89 +0.9 355,064 - GFF2669 0.89 +0.4 355,121 - -0.7 355,121 - +0.3 355,121 - -0.4 355,121 - -0.5 355,121 - -0.8 355,166 + -0.0 355,315 - +0.4 355,335 - -0.0 355,335 - +0.2 355,338 - +0.9 355,339 + +1.2 355,360 + -0.0 355,445 + -0.8 355,445 + +0.8 355,445 + -0.1 355,446 - +0.1 355,548 + GFF2670 0.21 +0.0 355,603 + GFF2670 0.32 -1.5 355,603 + GFF2670 0.32 -0.1 355,604 - GFF2670 0.32 -0.6 355,604 - GFF2670 0.32 -0.6 355,604 - GFF2670 0.32 +0.7 355,604 - GFF2670 0.32 -2.5 355,604 - GFF2670 0.32 +0.6 355,604 - GFF2670 0.32 -0.6 355,746 + GFF2670 0.60 +1.2 355,746 + GFF2670 0.60 -0.5 355,746 + GFF2670 0.60 -1.0 355,747 - GFF2670 0.60 +0.5 355,747 - GFF2670 0.60 -0.2 355,747 - GFF2670 0.60 +0.8 355,761 + GFF2670 0.63 -0.1 355,777 - GFF2670 0.66 -0.3 355,908 + +0.1 355,908 + +0.0 355,908 + -0.4 355,909 - -0.3 355,909 - -1.3 355,909 - -0.2 356,000 + +0.0 356,001 - +0.6 356,001 - +0.6 356,001 - +0.4 356,001 - -0.3 356,001 - -0.3 356,001 - -0.5 356,096 + GFF2671 0.14 -0.0 356,096 + GFF2671 0.14 +0.7 356,096 + GFF2671 0.14 -0.1 356,096 + GFF2671 0.14 +0.3 356,097 - GFF2671 0.14 -0.2 356,097 - GFF2671 0.14 +0.4 356,097 - GFF2671 0.14 -0.8 356,097 - GFF2671 0.14 -0.5 356,135 + GFF2671 0.18 -0.3 356,135 + GFF2671 0.18 +0.5 356,135 + GFF2671 0.18 -0.7 356,136 - GFF2671 0.19 +1.6 356,136 - GFF2671 0.19 -0.4 356,393 + GFF2671 0.48 -0.4 356,393 + GFF2671 0.48 -0.4 356,393 + GFF2671 0.48 +0.1 356,393 + GFF2671 0.48 -0.4 356,393 + GFF2671 0.48 +0.0 356,393 + GFF2671 0.48 +0.1 356,394 - GFF2671 0.48 -0.1 356,394 - GFF2671 0.48 +0.0 356,394 - GFF2671 0.48 -0.5 356,394 - GFF2671 0.48 +0.1 356,394 - GFF2671 0.48 -0.0 356,394 - GFF2671 0.48 +0.6 356,394 - GFF2671 0.48 +0.2 356,481 - GFF2671 0.58 +0.7 356,481 - GFF2671 0.58 -0.3 356,481 - GFF2671 0.58 -0.6 356,516 - GFF2671 0.62 +0.3 356,654 + GFF2671 0.77 +0.1 356,654 + GFF2671 0.77 -0.5 356,655 - GFF2671 0.78 -0.6 356,655 - GFF2671 0.78 +0.7 356,660 + GFF2671 0.78 +0.2 356,660 + GFF2671 0.78 +0.2 356,661 - GFF2671 0.78 -0.3 356,661 - GFF2671 0.78 -0.5 356,661 - GFF2671 0.78 -1.0 356,662 + GFF2671 0.78 -0.5 356,662 + GFF2671 0.78 -0.2 356,663 - GFF2671 0.78 -0.5 356,663 - GFF2671 0.78 -0.2 356,663 - GFF2671 0.78 +0.1 356,663 - GFF2671 0.78 -1.6 356,665 - GFF2671 0.79 +0.2 356,744 + GFF2671 0.88 -0.1 356,744 + GFF2671 0.88 +0.1 356,807 + +0.2 356,807 + -0.5 356,807 + -0.9 356,808 - +0.4 356,808 - -0.3 356,874 + -0.5 356,874 + -0.3 356,874 + +0.2 356,875 - -1.6 356,875 - -1.1 356,875 - -0.5 357,021 + -0.6 357,081 + +0.9 357,081 + +0.2 357,081 + -0.7 357,081 + +0.6 357,082 - +0.6 357,082 - +1.4 357,082 - +0.8 357,082 - +0.7 357,082 - -0.2 357,082 - -1.4 357,082 - -0.4 357,115 + -0.2 357,116 - -0.2 357,402 + GFF2672 0.61 -0.9 357,403 - GFF2672 0.62 -0.7 357,403 - GFF2672 0.62 -0.6 357,604 + GFF2673 0.13 +0.4 357,604 + GFF2673 0.13 -0.3 357,604 + GFF2673 0.13 -0.6 357,605 - GFF2673 0.14 +0.5 357,681 + GFF2673 0.27 +0.4
Or see this region's nucleotide sequence