Strain Fitness in Xanthobacter sp. DMC5 around GFF2665

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2663 and GFF2664 are separated by 156 nucleotidesGFF2664 and GFF2665 are separated by 4 nucleotidesGFF2665 and GFF2666 are separated by 6 nucleotidesGFF2666 and GFF2667 overlap by 4 nucleotides GFF2663 - hypothetical protein, at 347,958 to 348,428 GFF2663 GFF2664 - hypothetical protein, at 348,585 to 349,331 GFF2664 GFF2665 - Gluconate 2-dehydrogenase flavoprotein, at 349,336 to 350,853 GFF2665 GFF2666 - Gluconate 2-dehydrogenase flavoprotein, at 350,860 to 351,102 GFF2666 GFF2667 - Gluconate 2-dehydrogenase cytochrome c subunit, at 351,099 to 352,325 GFF2667 Position (kb) 349 350 351Strain fitness (log2 ratio) -2 -1 0 1 2at 348.426 kb on + strandat 348.427 kb on - strandat 348.497 kb on + strandat 348.497 kb on + strandat 348.498 kb on - strandat 348.498 kb on - strandat 348.498 kb on - strandat 348.543 kb on + strandat 348.543 kb on + strandat 348.544 kb on - strandat 348.544 kb on - strandat 348.753 kb on + strand, within GFF2664at 348.754 kb on - strand, within GFF2664at 348.754 kb on - strand, within GFF2664at 348.754 kb on - strand, within GFF2664at 348.754 kb on - strand, within GFF2664at 348.885 kb on + strand, within GFF2664at 348.886 kb on - strand, within GFF2664at 348.886 kb on - strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 349.008 kb on + strand, within GFF2664at 349.008 kb on + strand, within GFF2664at 349.009 kb on - strand, within GFF2664at 349.009 kb on - strand, within GFF2664at 349.009 kb on - strand, within GFF2664at 349.179 kb on + strand, within GFF2664at 349.180 kb on - strand, within GFF2664at 349.180 kb on - strand, within GFF2664at 349.180 kb on - strand, within GFF2664at 349.180 kb on - strand, within GFF2664at 349.236 kb on + strand, within GFF2664at 349.237 kb on - strand, within GFF2664at 349.237 kb on - strand, within GFF2664at 349.237 kb on - strand, within GFF2664at 349.252 kb on - strand, within GFF2664at 349.252 kb on - strand, within GFF2664at 349.252 kb on - strand, within GFF2664at 349.252 kb on - strand, within GFF2664at 349.253 kb on + strand, within GFF2664at 349.253 kb on + strand, within GFF2664at 349.253 kb on + strand, within GFF2664at 349.254 kb on - strand, within GFF2664at 349.270 kb on - strandat 349.435 kb on - strandat 349.510 kb on + strand, within GFF2665at 349.510 kb on + strand, within GFF2665at 349.511 kb on - strand, within GFF2665at 349.551 kb on + strand, within GFF2665at 349.662 kb on + strand, within GFF2665at 349.662 kb on + strand, within GFF2665at 349.662 kb on + strand, within GFF2665at 349.663 kb on - strand, within GFF2665at 349.663 kb on - strand, within GFF2665at 349.663 kb on - strand, within GFF2665at 349.717 kb on + strand, within GFF2665at 349.717 kb on + strand, within GFF2665at 349.717 kb on + strand, within GFF2665at 349.717 kb on + strand, within GFF2665at 349.718 kb on - strand, within GFF2665at 349.792 kb on + strand, within GFF2665at 349.792 kb on + strand, within GFF2665at 349.792 kb on + strand, within GFF2665at 349.793 kb on - strand, within GFF2665at 349.793 kb on - strand, within GFF2665at 349.793 kb on - strand, within GFF2665at 349.897 kb on + strand, within GFF2665at 349.897 kb on + strand, within GFF2665at 349.898 kb on - strand, within GFF2665at 349.898 kb on - strand, within GFF2665at 349.898 kb on - strand, within GFF2665at 349.924 kb on + strand, within GFF2665at 349.925 kb on - strand, within GFF2665at 349.925 kb on - strand, within GFF2665at 349.925 kb on - strand, within GFF2665at 349.939 kb on - strand, within GFF2665at 349.966 kb on + strand, within GFF2665at 349.966 kb on + strand, within GFF2665at 349.967 kb on - strand, within GFF2665at 349.967 kb on - strand, within GFF2665at 349.967 kb on - strand, within GFF2665at 350.008 kb on + strand, within GFF2665at 350.009 kb on - strand, within GFF2665at 350.068 kb on + strand, within GFF2665at 350.069 kb on - strand, within GFF2665at 350.083 kb on + strand, within GFF2665at 350.083 kb on + strand, within GFF2665at 350.083 kb on + strand, within GFF2665at 350.083 kb on + strand, within GFF2665at 350.084 kb on - strand, within GFF2665at 350.084 kb on - strand, within GFF2665at 350.125 kb on - strand, within GFF2665at 350.223 kb on + strand, within GFF2665at 350.223 kb on + strand, within GFF2665at 350.223 kb on + strand, within GFF2665at 350.223 kb on + strand, within GFF2665at 350.224 kb on - strand, within GFF2665at 350.224 kb on - strand, within GFF2665at 350.224 kb on - strand, within GFF2665at 350.224 kb on - strand, within GFF2665at 350.326 kb on + strand, within GFF2665at 350.326 kb on + strand, within GFF2665at 350.326 kb on + strand, within GFF2665at 350.327 kb on - strand, within GFF2665at 350.327 kb on - strand, within GFF2665at 350.327 kb on - strand, within GFF2665at 350.327 kb on - strand, within GFF2665at 350.366 kb on - strand, within GFF2665at 350.366 kb on - strand, within GFF2665at 350.366 kb on - strand, within GFF2665at 350.366 kb on - strand, within GFF2665at 350.620 kb on + strand, within GFF2665at 350.620 kb on + strand, within GFF2665at 350.620 kb on + strand, within GFF2665at 350.620 kb on + strand, within GFF2665at 350.621 kb on - strand, within GFF2665at 350.621 kb on - strand, within GFF2665at 350.621 kb on - strand, within GFF2665at 350.621 kb on - strand, within GFF2665at 350.621 kb on - strand, within GFF2665at 350.621 kb on - strand, within GFF2665at 350.659 kb on + strand, within GFF2665at 350.660 kb on - strand, within GFF2665at 350.660 kb on - strand, within GFF2665at 350.677 kb on + strand, within GFF2665at 350.677 kb on + strand, within GFF2665at 350.677 kb on + strand, within GFF2665at 350.678 kb on - strand, within GFF2665at 350.678 kb on - strand, within GFF2665at 350.698 kb on + strand, within GFF2665at 350.698 kb on + strand, within GFF2665at 350.699 kb on - strand, within GFF2665at 350.699 kb on - strand, within GFF2665at 350.699 kb on - strand, within GFF2665at 350.773 kb on + strandat 350.773 kb on + strandat 350.774 kb on - strandat 350.774 kb on - strandat 350.774 kb on - strandat 350.774 kb on - strandat 350.774 kb on - strandat 350.828 kb on + strandat 350.828 kb on + strandat 350.828 kb on + strandat 350.829 kb on - strandat 350.829 kb on - strandat 350.829 kb on - strandat 350.851 kb on + strandat 350.851 kb on + strandat 350.852 kb on - strandat 350.852 kb on - strandat 350.866 kb on + strandat 350.867 kb on - strandat 350.867 kb on - strandat 350.935 kb on + strand, within GFF2666at 350.936 kb on - strand, within GFF2666at 351.004 kb on + strand, within GFF2666at 351.005 kb on - strand, within GFF2666at 351.005 kb on - strand, within GFF2666at 351.005 kb on - strand, within GFF2666at 351.037 kb on + strand, within GFF2666at 351.037 kb on + strand, within GFF2666at 351.038 kb on - strand, within GFF2666at 351.038 kb on - strand, within GFF2666at 351.038 kb on - strand, within GFF2666at 351.067 kb on + strand, within GFF2666at 351.067 kb on + strand, within GFF2666at 351.067 kb on + strand, within GFF2666at 351.067 kb on + strand, within GFF2666at 351.068 kb on - strand, within GFF2666at 351.068 kb on - strand, within GFF2666at 351.068 kb on - strand, within GFF2666at 351.068 kb on - strand, within GFF2666at 351.068 kb on - strand, within GFF2666at 351.068 kb on - strand, within GFF2666at 351.068 kb on - strand, within GFF2666at 351.068 kb on - strand, within GFF2666at 351.195 kb on + strandat 351.196 kb on - strandat 351.196 kb on - strandat 351.206 kb on - strandat 351.206 kb on - strandat 351.206 kb on - strandat 351.394 kb on - strand, within GFF2667at 351.427 kb on - strand, within GFF2667at 351.427 kb on - strand, within GFF2667at 351.427 kb on - strand, within GFF2667at 351.427 kb on - strand, within GFF2667at 351.427 kb on - strand, within GFF2667at 351.469 kb on - strand, within GFF2667at 351.469 kb on - strand, within GFF2667at 351.585 kb on + strand, within GFF2667at 351.586 kb on - strand, within GFF2667at 351.586 kb on - strand, within GFF2667at 351.586 kb on - strand, within GFF2667at 351.586 kb on - strand, within GFF2667at 351.630 kb on + strand, within GFF2667at 351.631 kb on - strand, within GFF2667at 351.631 kb on - strand, within GFF2667at 351.752 kb on + strand, within GFF2667at 351.752 kb on + strand, within GFF2667at 351.753 kb on - strand, within GFF2667at 351.753 kb on - strand, within GFF2667at 351.808 kb on - strand, within GFF2667at 351.831 kb on + strand, within GFF2667

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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348,426 + -0.4
348,427 - +1.2
348,497 + +0.4
348,497 + -2.2
348,498 - +0.3
348,498 - +0.7
348,498 - -0.5
348,543 + -0.6
348,543 + +0.1
348,544 - -0.0
348,544 - +0.4
348,753 + GFF2664 0.22 -1.1
348,754 - GFF2664 0.23 -0.7
348,754 - GFF2664 0.23 +0.7
348,754 - GFF2664 0.23 -0.5
348,754 - GFF2664 0.23 +0.4
348,885 + GFF2664 0.40 +1.2
348,886 - GFF2664 0.40 -2.2
348,886 - GFF2664 0.40 -0.0
348,906 + GFF2664 0.43 -0.5
348,906 + GFF2664 0.43 -2.5
348,906 + GFF2664 0.43 +0.6
348,906 + GFF2664 0.43 +0.5
348,906 + GFF2664 0.43 -0.4
348,906 + GFF2664 0.43 -0.8
348,906 + GFF2664 0.43 -0.4
348,906 + GFF2664 0.43 -0.1
348,907 - GFF2664 0.43 +0.1
348,907 - GFF2664 0.43 -0.4
348,907 - GFF2664 0.43 -1.0
348,907 - GFF2664 0.43 -0.4
348,907 - GFF2664 0.43 +0.5
348,907 - GFF2664 0.43 -0.5
348,907 - GFF2664 0.43 +0.2
348,907 - GFF2664 0.43 -0.3
348,907 - GFF2664 0.43 -0.5
348,907 - GFF2664 0.43 -0.0
348,907 - GFF2664 0.43 -1.6
349,008 + GFF2664 0.57 -0.7
349,008 + GFF2664 0.57 +2.0
349,009 - GFF2664 0.57 +0.2
349,009 - GFF2664 0.57 -0.6
349,009 - GFF2664 0.57 -0.2
349,179 + GFF2664 0.80 -1.4
349,180 - GFF2664 0.80 +0.7
349,180 - GFF2664 0.80 +0.4
349,180 - GFF2664 0.80 +0.0
349,180 - GFF2664 0.80 +0.8
349,236 + GFF2664 0.87 -0.1
349,237 - GFF2664 0.87 -0.2
349,237 - GFF2664 0.87 -0.0
349,237 - GFF2664 0.87 -2.2
349,252 - GFF2664 0.89 +0.3
349,252 - GFF2664 0.89 -0.4
349,252 - GFF2664 0.89 -0.0
349,252 - GFF2664 0.89 -0.3
349,253 + GFF2664 0.89 +0.6
349,253 + GFF2664 0.89 +0.1
349,253 + GFF2664 0.89 -0.1
349,254 - GFF2664 0.90 -0.2
349,270 - -1.2
349,435 - -0.5
349,510 + GFF2665 0.11 +0.6
349,510 + GFF2665 0.11 -0.2
349,511 - GFF2665 0.12 +0.9
349,551 + GFF2665 0.14 +0.5
349,662 + GFF2665 0.21 -2.5
349,662 + GFF2665 0.21 -0.3
349,662 + GFF2665 0.21 +0.5
349,663 - GFF2665 0.22 +0.1
349,663 - GFF2665 0.22 -1.0
349,663 - GFF2665 0.22 +0.3
349,717 + GFF2665 0.25 +0.4
349,717 + GFF2665 0.25 +0.2
349,717 + GFF2665 0.25 -0.2
349,717 + GFF2665 0.25 +0.5
349,718 - GFF2665 0.25 -0.6
349,792 + GFF2665 0.30 -0.0
349,792 + GFF2665 0.30 +0.5
349,792 + GFF2665 0.30 +0.2
349,793 - GFF2665 0.30 -0.3
349,793 - GFF2665 0.30 -1.0
349,793 - GFF2665 0.30 +0.5
349,897 + GFF2665 0.37 +0.2
349,897 + GFF2665 0.37 +0.8
349,898 - GFF2665 0.37 -0.3
349,898 - GFF2665 0.37 -0.1
349,898 - GFF2665 0.37 -0.2
349,924 + GFF2665 0.39 +0.8
349,925 - GFF2665 0.39 +0.5
349,925 - GFF2665 0.39 -0.1
349,925 - GFF2665 0.39 +0.3
349,939 - GFF2665 0.40 -0.0
349,966 + GFF2665 0.42 +0.5
349,966 + GFF2665 0.42 +0.1
349,967 - GFF2665 0.42 -1.2
349,967 - GFF2665 0.42 -0.2
349,967 - GFF2665 0.42 +0.6
350,008 + GFF2665 0.44 +0.2
350,009 - GFF2665 0.44 +0.3
350,068 + GFF2665 0.48 +0.3
350,069 - GFF2665 0.48 -0.2
350,083 + GFF2665 0.49 -1.2
350,083 + GFF2665 0.49 -0.7
350,083 + GFF2665 0.49 -1.1
350,083 + GFF2665 0.49 -0.0
350,084 - GFF2665 0.49 +1.0
350,084 - GFF2665 0.49 +0.5
350,125 - GFF2665 0.52 +0.4
350,223 + GFF2665 0.58 +0.5
350,223 + GFF2665 0.58 -0.6
350,223 + GFF2665 0.58 -0.5
350,223 + GFF2665 0.58 +0.1
350,224 - GFF2665 0.58 -0.2
350,224 - GFF2665 0.58 -0.3
350,224 - GFF2665 0.58 -1.2
350,224 - GFF2665 0.58 -0.3
350,326 + GFF2665 0.65 -0.3
350,326 + GFF2665 0.65 +0.6
350,326 + GFF2665 0.65 -0.5
350,327 - GFF2665 0.65 +0.8
350,327 - GFF2665 0.65 -0.6
350,327 - GFF2665 0.65 -1.2
350,327 - GFF2665 0.65 +0.1
350,366 - GFF2665 0.68 +0.7
350,366 - GFF2665 0.68 -1.2
350,366 - GFF2665 0.68 -0.5
350,366 - GFF2665 0.68 +0.3
350,620 + GFF2665 0.85 -0.2
350,620 + GFF2665 0.85 +0.0
350,620 + GFF2665 0.85 -0.2
350,620 + GFF2665 0.85 -0.6
350,621 - GFF2665 0.85 +0.3
350,621 - GFF2665 0.85 -0.8
350,621 - GFF2665 0.85 +0.3
350,621 - GFF2665 0.85 +0.5
350,621 - GFF2665 0.85 -0.5
350,621 - GFF2665 0.85 +0.6
350,659 + GFF2665 0.87 -0.0
350,660 - GFF2665 0.87 +0.4
350,660 - GFF2665 0.87 -0.5
350,677 + GFF2665 0.88 -0.6
350,677 + GFF2665 0.88 -0.0
350,677 + GFF2665 0.88 +0.3
350,678 - GFF2665 0.88 +1.2
350,678 - GFF2665 0.88 -2.3
350,698 + GFF2665 0.90 -0.5
350,698 + GFF2665 0.90 -0.6
350,699 - GFF2665 0.90 -1.0
350,699 - GFF2665 0.90 +0.8
350,699 - GFF2665 0.90 +0.5
350,773 + -0.2
350,773 + -0.4
350,774 - -0.7
350,774 - -0.2
350,774 - -0.2
350,774 - +0.3
350,774 - +0.5
350,828 + +1.2
350,828 + -0.7
350,828 + +0.5
350,829 - -0.5
350,829 - -0.3
350,829 - +0.1
350,851 + +0.4
350,851 + +0.6
350,852 - -1.1
350,852 - +0.4
350,866 + -0.7
350,867 - -2.0
350,867 - +0.2
350,935 + GFF2666 0.31 +0.8
350,936 - GFF2666 0.31 -0.4
351,004 + GFF2666 0.59 -0.8
351,005 - GFF2666 0.60 +0.2
351,005 - GFF2666 0.60 +0.0
351,005 - GFF2666 0.60 -0.4
351,037 + GFF2666 0.73 +0.1
351,037 + GFF2666 0.73 +1.5
351,038 - GFF2666 0.73 -0.2
351,038 - GFF2666 0.73 +1.0
351,038 - GFF2666 0.73 +0.6
351,067 + GFF2666 0.85 -1.6
351,067 + GFF2666 0.85 -0.7
351,067 + GFF2666 0.85 -0.3
351,067 + GFF2666 0.85 -0.4
351,068 - GFF2666 0.86 -0.5
351,068 - GFF2666 0.86 -0.6
351,068 - GFF2666 0.86 +0.1
351,068 - GFF2666 0.86 -0.4
351,068 - GFF2666 0.86 +0.0
351,068 - GFF2666 0.86 +0.2
351,068 - GFF2666 0.86 -1.7
351,068 - GFF2666 0.86 -1.2
351,195 + +0.7
351,196 - +2.0
351,196 - +0.7
351,206 - +0.6
351,206 - -0.7
351,206 - -1.1
351,394 - GFF2667 0.24 +0.9
351,427 - GFF2667 0.27 +0.3
351,427 - GFF2667 0.27 -0.3
351,427 - GFF2667 0.27 -0.1
351,427 - GFF2667 0.27 +0.3
351,427 - GFF2667 0.27 -0.4
351,469 - GFF2667 0.30 -0.7
351,469 - GFF2667 0.30 -0.8
351,585 + GFF2667 0.40 +0.7
351,586 - GFF2667 0.40 -0.8
351,586 - GFF2667 0.40 -0.5
351,586 - GFF2667 0.40 -0.3
351,586 - GFF2667 0.40 -0.7
351,630 + GFF2667 0.43 -0.9
351,631 - GFF2667 0.43 -0.8
351,631 - GFF2667 0.43 -0.5
351,752 + GFF2667 0.53 +0.7
351,752 + GFF2667 0.53 +0.2
351,753 - GFF2667 0.53 +0.2
351,753 - GFF2667 0.53 +0.4
351,808 - GFF2667 0.58 -0.4
351,831 + GFF2667 0.60 -0.1

Or see this region's nucleotide sequence