Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2648 and GFF2649 are separated by 764 nucleotides GFF2649 and GFF2650 are separated by 399 nucleotides
GFF2648 - Pyridoxal 4-dehydrogenase, at 333,621 to 334,634
GFF2648
GFF2649 - hypothetical protein, at 335,399 to 335,941
GFF2649
GFF2650 - Oligo-1,6-glucosidase 1, at 336,341 to 337,969
GFF2650
Position (kb) 335
336 Strain fitness (log2 ratio) -2
-1
0
1
2 at 334.446 kb on + strand, within GFF2648 at 334.447 kb on - strand, within GFF2648 at 334.447 kb on - strand, within GFF2648 at 334.483 kb on + strand, within GFF2648 at 334.483 kb on + strand, within GFF2648 at 334.483 kb on + strand, within GFF2648 at 334.483 kb on + strand, within GFF2648 at 334.484 kb on - strand, within GFF2648 at 334.484 kb on - strand, within GFF2648 at 334.484 kb on - strand, within GFF2648 at 334.484 kb on - strand, within GFF2648 at 334.502 kb on - strand, within GFF2648 at 334.619 kb on + strand at 334.619 kb on + strand at 334.690 kb on + strand at 334.690 kb on + strand at 334.690 kb on + strand at 334.690 kb on + strand at 334.714 kb on - strand at 334.837 kb on + strand at 334.838 kb on - strand at 334.838 kb on - strand at 334.838 kb on - strand at 334.848 kb on - strand at 334.851 kb on - strand at 335.020 kb on + strand at 335.021 kb on - strand at 335.021 kb on - strand at 335.021 kb on - strand at 335.021 kb on - strand at 335.071 kb on + strand at 335.071 kb on + strand at 335.072 kb on - strand at 335.072 kb on - strand at 335.110 kb on - strand at 335.110 kb on - strand at 335.124 kb on + strand at 335.124 kb on + strand at 335.125 kb on - strand at 335.125 kb on - strand at 335.125 kb on - strand at 335.125 kb on - strand at 335.253 kb on + strand at 335.253 kb on + strand at 335.253 kb on + strand at 335.254 kb on - strand at 335.254 kb on - strand at 335.273 kb on + strand at 335.273 kb on + strand at 335.274 kb on - strand at 335.274 kb on - strand at 335.310 kb on + strand at 335.311 kb on - strand at 335.311 kb on - strand at 335.311 kb on - strand at 335.321 kb on + strand at 335.330 kb on - strand at 335.330 kb on - strand at 335.352 kb on + strand at 335.352 kb on + strand at 335.352 kb on + strand at 335.353 kb on - strand at 335.353 kb on - strand at 335.412 kb on + strand at 335.412 kb on + strand at 335.413 kb on - strand at 335.413 kb on - strand at 335.413 kb on - strand at 335.486 kb on - strand, within GFF2649 at 335.486 kb on - strand, within GFF2649 at 335.762 kb on - strand, within GFF2649 at 335.762 kb on - strand, within GFF2649 at 335.791 kb on + strand, within GFF2649 at 335.791 kb on + strand, within GFF2649 at 335.791 kb on + strand, within GFF2649 at 335.791 kb on + strand, within GFF2649 at 335.791 kb on + strand, within GFF2649 at 335.792 kb on - strand, within GFF2649 at 335.840 kb on + strand, within GFF2649 at 335.841 kb on - strand, within GFF2649 at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 335.927 kb on - strand at 336.003 kb on + strand at 336.003 kb on + strand at 336.086 kb on + strand at 336.087 kb on - strand at 336.118 kb on - strand at 336.137 kb on - strand at 336.322 kb on + strand at 336.322 kb on + strand at 336.322 kb on + strand at 336.322 kb on + strand at 336.322 kb on + strand at 336.323 kb on - strand at 336.323 kb on - strand at 336.323 kb on - strand at 336.323 kb on - strand at 336.350 kb on - strand at 336.350 kb on - strand at 336.350 kb on - strand at 336.350 kb on - strand at 336.425 kb on + strand at 336.425 kb on + strand at 336.425 kb on + strand at 336.426 kb on - strand at 336.447 kb on - strand at 336.447 kb on - strand at 336.447 kb on - strand at 336.506 kb on + strand, within GFF2650 at 336.506 kb on + strand, within GFF2650 at 336.506 kb on + strand, within GFF2650 at 336.506 kb on + strand, within GFF2650 at 336.506 kb on + strand, within GFF2650 at 336.506 kb on + strand, within GFF2650 at 336.506 kb on + strand, within GFF2650 at 336.507 kb on - strand, within GFF2650 at 336.507 kb on - strand, within GFF2650 at 336.507 kb on - strand, within GFF2650 at 336.511 kb on - strand, within GFF2650 at 336.511 kb on - strand, within GFF2650 at 336.578 kb on + strand, within GFF2650 at 336.579 kb on - strand, within GFF2650 at 336.583 kb on + strand, within GFF2650 at 336.583 kb on + strand, within GFF2650 at 336.583 kb on + strand, within GFF2650 at 336.583 kb on + strand, within GFF2650 at 336.583 kb on + strand, within GFF2650 at 336.583 kb on + strand, within GFF2650 at 336.584 kb on - strand, within GFF2650 at 336.584 kb on - strand, within GFF2650 at 336.584 kb on - strand, within GFF2650 at 336.593 kb on + strand, within GFF2650 at 336.593 kb on + strand, within GFF2650 at 336.594 kb on - strand, within GFF2650 at 336.594 kb on - strand, within GFF2650 at 336.629 kb on + strand, within GFF2650 at 336.654 kb on + strand, within GFF2650 at 336.655 kb on - strand, within GFF2650 at 336.767 kb on + strand, within GFF2650 at 336.767 kb on + strand, within GFF2650 at 336.767 kb on + strand, within GFF2650 at 336.768 kb on - strand, within GFF2650 at 336.768 kb on - strand, within GFF2650 at 336.768 kb on - strand, within GFF2650 at 336.768 kb on - strand, within GFF2650 at 336.768 kb on - strand, within GFF2650 at 336.817 kb on + strand, within GFF2650 at 336.817 kb on + strand, within GFF2650 at 336.817 kb on + strand, within GFF2650 at 336.817 kb on + strand, within GFF2650 at 336.817 kb on + strand, within GFF2650 at 336.818 kb on - strand, within GFF2650 at 336.866 kb on + strand, within GFF2650 at 336.866 kb on + strand, within GFF2650 at 336.869 kb on + strand, within GFF2650 at 336.869 kb on + strand, within GFF2650 at 336.869 kb on + strand, within GFF2650 at 336.869 kb on + strand, within GFF2650 at 336.870 kb on - strand, within GFF2650 at 336.870 kb on - strand, within GFF2650 at 336.870 kb on - strand, within GFF2650 at 336.870 kb on - strand, within GFF2650 at 336.870 kb on - strand, within GFF2650 at 336.870 kb on - strand, within GFF2650 at 336.870 kb on - strand, within GFF2650 at 336.870 kb on - strand, within GFF2650 at 336.873 kb on - strand, within GFF2650 at 336.873 kb on - strand, within GFF2650 at 336.924 kb on + strand, within GFF2650 at 336.924 kb on + strand, within GFF2650 at 336.924 kb on + strand, within GFF2650
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 334,446 + GFF2648 0.81 -0.0 334,447 - GFF2648 0.81 +0.1 334,447 - GFF2648 0.81 -0.4 334,483 + GFF2648 0.85 +0.1 334,483 + GFF2648 0.85 +0.2 334,483 + GFF2648 0.85 +0.1 334,483 + GFF2648 0.85 +1.2 334,484 - GFF2648 0.85 -0.6 334,484 - GFF2648 0.85 +0.0 334,484 - GFF2648 0.85 -1.0 334,484 - GFF2648 0.85 -0.1 334,502 - GFF2648 0.87 -0.7 334,619 + +0.2 334,619 + -0.1 334,690 + -0.9 334,690 + +0.7 334,690 + -0.4 334,690 + +0.1 334,714 - -0.4 334,837 + +0.4 334,838 - +0.5 334,838 - +0.2 334,838 - -0.1 334,848 - -0.8 334,851 - +0.2 335,020 + -2.3 335,021 - +1.1 335,021 - +0.6 335,021 - +0.2 335,021 - +0.2 335,071 + -0.2 335,071 + +0.2 335,072 - +0.1 335,072 - -0.1 335,110 - +0.2 335,110 - -0.3 335,124 + -2.2 335,124 + +0.3 335,125 - -1.6 335,125 - +1.2 335,125 - -0.5 335,125 - +0.2 335,253 + -0.4 335,253 + -0.1 335,253 + -0.2 335,254 - -0.5 335,254 - -0.1 335,273 + +0.9 335,273 + -0.2 335,274 - +0.3 335,274 - -0.1 335,310 + -0.4 335,311 - -0.4 335,311 - -0.0 335,311 - +0.0 335,321 + -0.4 335,330 - -0.1 335,330 - -0.1 335,352 + +0.8 335,352 + +0.8 335,352 + +0.5 335,353 - +0.3 335,353 - -1.3 335,412 + -1.0 335,412 + +1.0 335,413 - +0.2 335,413 - +0.2 335,413 - -0.4 335,486 - GFF2649 0.16 +0.3 335,486 - GFF2649 0.16 +0.2 335,762 - GFF2649 0.67 -0.5 335,762 - GFF2649 0.67 -0.2 335,791 + GFF2649 0.72 -0.1 335,791 + GFF2649 0.72 -0.9 335,791 + GFF2649 0.72 -0.4 335,791 + GFF2649 0.72 +2.3 335,791 + GFF2649 0.72 -0.5 335,792 - GFF2649 0.72 +0.4 335,840 + GFF2649 0.81 -0.0 335,841 - GFF2649 0.81 +0.3 335,927 - -0.8 335,927 - +0.3 335,927 - +0.9 335,927 - -0.8 336,003 + -0.3 336,003 + -0.6 336,086 + -0.0 336,087 - +0.2 336,118 - +0.4 336,137 - -0.8 336,322 + -0.7 336,322 + -0.0 336,322 + +0.7 336,322 + -0.2 336,322 + -0.2 336,323 - -0.7 336,323 - -0.4 336,323 - -1.2 336,323 - -0.2 336,350 - +1.2 336,350 - +0.6 336,350 - -1.5 336,350 - +0.2 336,425 + -0.6 336,425 + -0.8 336,425 + +0.5 336,426 - -0.4 336,447 - +0.3 336,447 - -0.1 336,447 - +0.3 336,506 + GFF2650 0.10 +0.2 336,506 + GFF2650 0.10 +0.6 336,506 + GFF2650 0.10 -0.0 336,506 + GFF2650 0.10 +0.8 336,506 + GFF2650 0.10 -0.7 336,506 + GFF2650 0.10 -0.2 336,506 + GFF2650 0.10 +0.5 336,507 - GFF2650 0.10 +0.0 336,507 - GFF2650 0.10 +0.1 336,507 - GFF2650 0.10 -0.4 336,511 - GFF2650 0.10 -0.1 336,511 - GFF2650 0.10 -0.6 336,578 + GFF2650 0.15 +0.2 336,579 - GFF2650 0.15 +0.3 336,583 + GFF2650 0.15 +1.4 336,583 + GFF2650 0.15 -0.6 336,583 + GFF2650 0.15 +0.2 336,583 + GFF2650 0.15 -0.8 336,583 + GFF2650 0.15 +0.6 336,583 + GFF2650 0.15 -0.6 336,584 - GFF2650 0.15 -0.5 336,584 - GFF2650 0.15 +0.2 336,584 - GFF2650 0.15 +0.9 336,593 + GFF2650 0.15 +0.8 336,593 + GFF2650 0.15 +0.2 336,594 - GFF2650 0.16 -0.7 336,594 - GFF2650 0.16 +0.0 336,629 + GFF2650 0.18 -0.1 336,654 + GFF2650 0.19 +0.0 336,655 - GFF2650 0.19 +0.0 336,767 + GFF2650 0.26 -0.0 336,767 + GFF2650 0.26 +0.8 336,767 + GFF2650 0.26 +0.0 336,768 - GFF2650 0.26 -1.3 336,768 - GFF2650 0.26 -0.5 336,768 - GFF2650 0.26 +0.5 336,768 - GFF2650 0.26 -1.0 336,768 - GFF2650 0.26 +0.3 336,817 + GFF2650 0.29 -1.4 336,817 + GFF2650 0.29 -0.8 336,817 + GFF2650 0.29 +0.9 336,817 + GFF2650 0.29 +0.0 336,817 + GFF2650 0.29 -0.8 336,818 - GFF2650 0.29 -0.1 336,866 + GFF2650 0.32 -1.5 336,866 + GFF2650 0.32 -0.2 336,869 + GFF2650 0.32 +0.2 336,869 + GFF2650 0.32 +0.9 336,869 + GFF2650 0.32 +0.5 336,869 + GFF2650 0.32 -0.0 336,870 - GFF2650 0.32 -0.0 336,870 - GFF2650 0.32 +0.3 336,870 - GFF2650 0.32 +0.4 336,870 - GFF2650 0.32 -0.2 336,870 - GFF2650 0.32 +0.5 336,870 - GFF2650 0.32 +0.4 336,870 - GFF2650 0.32 +0.6 336,870 - GFF2650 0.32 +0.4 336,873 - GFF2650 0.33 -0.5 336,873 - GFF2650 0.33 -0.3 336,924 + GFF2650 0.36 +0.7 336,924 + GFF2650 0.36 +0.4 336,924 + GFF2650 0.36 -0.3
Or see this region's nucleotide sequence