Strain Fitness in Xanthobacter sp. DMC5 around GFF2642

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2641 and GFF2642 overlap by 4 nucleotidesGFF2642 and GFF2643 overlap by 4 nucleotides GFF2641 - hypothetical protein, at 325,580 to 326,860 GFF2641 GFF2642 - hypothetical protein, at 326,857 to 327,546 GFF2642 GFF2643 - hypothetical protein, at 327,543 to 328,595 GFF2643 Position (kb) 326 327 328Strain fitness (log2 ratio) -2 -1 0 1at 326.024 kb on - strand, within GFF2641at 326.261 kb on + strand, within GFF2641at 326.261 kb on + strand, within GFF2641at 326.261 kb on + strand, within GFF2641at 326.261 kb on + strand, within GFF2641at 326.261 kb on + strand, within GFF2641at 326.261 kb on + strand, within GFF2641at 326.262 kb on - strand, within GFF2641at 326.262 kb on - strand, within GFF2641at 326.262 kb on - strand, within GFF2641at 326.549 kb on + strand, within GFF2641at 326.549 kb on + strand, within GFF2641at 326.550 kb on - strand, within GFF2641at 326.866 kb on + strandat 326.866 kb on + strandat 326.866 kb on + strandat 326.866 kb on + strandat 326.867 kb on - strandat 326.867 kb on - strandat 326.867 kb on - strandat 326.887 kb on + strandat 326.887 kb on + strandat 326.917 kb on + strandat 327.238 kb on + strand, within GFF2642at 327.238 kb on + strand, within GFF2642at 327.238 kb on + strand, within GFF2642at 327.238 kb on + strand, within GFF2642at 327.238 kb on + strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.244 kb on + strand, within GFF2642at 327.244 kb on + strand, within GFF2642at 327.244 kb on + strand, within GFF2642at 327.245 kb on - strand, within GFF2642at 327.280 kb on + strand, within GFF2642at 327.280 kb on + strand, within GFF2642at 327.280 kb on + strand, within GFF2642at 327.281 kb on - strand, within GFF2642at 327.281 kb on - strand, within GFF2642at 327.609 kb on - strandat 327.609 kb on - strandat 327.690 kb on + strand, within GFF2643at 327.690 kb on + strand, within GFF2643at 327.691 kb on - strand, within GFF2643at 327.834 kb on - strand, within GFF2643at 327.893 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.945 kb on + strand, within GFF2643at 327.945 kb on + strand, within GFF2643at 327.945 kb on + strand, within GFF2643at 327.945 kb on + strand, within GFF2643at 327.992 kb on - strand, within GFF2643at 328.124 kb on - strand, within GFF2643at 328.156 kb on - strand, within GFF2643at 328.156 kb on - strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.212 kb on + strand, within GFF2643at 328.212 kb on + strand, within GFF2643at 328.212 kb on + strand, within GFF2643at 328.314 kb on + strand, within GFF2643at 328.314 kb on + strand, within GFF2643at 328.470 kb on + strand, within GFF2643at 328.470 kb on + strand, within GFF2643at 328.470 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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326,024 - GFF2641 0.35 +0.2
326,261 + GFF2641 0.53 +1.0
326,261 + GFF2641 0.53 +1.2
326,261 + GFF2641 0.53 +1.2
326,261 + GFF2641 0.53 -0.8
326,261 + GFF2641 0.53 +0.8
326,261 + GFF2641 0.53 +0.8
326,262 - GFF2641 0.53 +0.1
326,262 - GFF2641 0.53 -0.0
326,262 - GFF2641 0.53 -0.8
326,549 + GFF2641 0.76 +0.9
326,549 + GFF2641 0.76 +0.9
326,550 - GFF2641 0.76 -0.1
326,866 + +0.5
326,866 + +0.8
326,866 + -0.8
326,866 + -0.5
326,867 - -0.0
326,867 - -1.0
326,867 - -0.2
326,887 + +1.2
326,887 + -1.7
326,917 + +0.6
327,238 + GFF2642 0.55 +0.7
327,238 + GFF2642 0.55 -0.1
327,238 + GFF2642 0.55 -0.3
327,238 + GFF2642 0.55 -0.2
327,238 + GFF2642 0.55 +0.2
327,239 - GFF2642 0.55 -0.3
327,239 - GFF2642 0.55 -0.5
327,239 - GFF2642 0.55 -1.5
327,239 - GFF2642 0.55 -1.2
327,239 - GFF2642 0.55 +0.0
327,239 - GFF2642 0.55 +0.3
327,244 + GFF2642 0.56 -1.2
327,244 + GFF2642 0.56 -0.2
327,244 + GFF2642 0.56 -1.5
327,245 - GFF2642 0.56 +0.5
327,280 + GFF2642 0.61 +0.9
327,280 + GFF2642 0.61 +0.2
327,280 + GFF2642 0.61 +0.2
327,281 - GFF2642 0.61 -0.7
327,281 - GFF2642 0.61 -0.3
327,609 - -0.8
327,609 - +0.0
327,690 + GFF2643 0.14 -1.2
327,690 + GFF2643 0.14 -0.5
327,691 - GFF2643 0.14 +0.2
327,834 - GFF2643 0.28 -0.3
327,893 - GFF2643 0.33 +0.3
327,913 - GFF2643 0.35 +0.1
327,913 - GFF2643 0.35 -0.6
327,913 - GFF2643 0.35 +0.5
327,913 - GFF2643 0.35 -0.0
327,913 - GFF2643 0.35 -0.1
327,913 - GFF2643 0.35 -1.8
327,913 - GFF2643 0.35 -1.3
327,945 + GFF2643 0.38 +0.9
327,945 + GFF2643 0.38 +0.1
327,945 + GFF2643 0.38 -0.0
327,945 + GFF2643 0.38 -0.2
327,992 - GFF2643 0.43 -0.5
328,124 - GFF2643 0.55 -0.1
328,156 - GFF2643 0.58 +0.2
328,156 - GFF2643 0.58 +0.4
328,188 + GFF2643 0.61 -1.2
328,188 + GFF2643 0.61 -1.7
328,188 + GFF2643 0.61 +0.4
328,188 + GFF2643 0.61 -0.3
328,188 + GFF2643 0.61 -0.4
328,188 + GFF2643 0.61 +0.1
328,212 + GFF2643 0.64 +0.3
328,212 + GFF2643 0.64 +0.1
328,212 + GFF2643 0.64 +0.8
328,314 + GFF2643 0.73 -0.4
328,314 + GFF2643 0.73 -0.1
328,470 + GFF2643 0.88 -0.1
328,470 + GFF2643 0.88 +0.3
328,470 + GFF2643 0.88 +0.6
328,488 + GFF2643 0.90 -0.6
328,488 + GFF2643 0.90 -1.1
328,488 + GFF2643 0.90 +1.2
328,488 + GFF2643 0.90 -0.3
328,488 + GFF2643 0.90 -0.0
328,488 + GFF2643 0.90 -1.1
328,488 + GFF2643 0.90 -0.4
328,489 - GFF2643 0.90 -0.4
328,489 - GFF2643 0.90 -0.3
328,489 - GFF2643 0.90 -2.1
328,489 - GFF2643 0.90 +0.5
328,489 - GFF2643 0.90 -0.4
328,489 - GFF2643 0.90 +0.2
328,489 - GFF2643 0.90 -1.7
328,489 - GFF2643 0.90 -0.6

Or see this region's nucleotide sequence