Strain Fitness in Xanthobacter sp. DMC5 around GFF2638

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2635 and GFF2636 overlap by 4 nucleotidesGFF2636 and GFF2637 overlap by 1 nucleotidesGFF2637 and GFF2638 are separated by 12 nucleotidesGFF2638 and GFF2639 overlap by 4 nucleotidesGFF2639 and GFF2640 are separated by 9 nucleotidesGFF2640 and GFF2641 overlap by 4 nucleotides GFF2635 - hypothetical protein, at 320,553 to 321,539 GFF2635 GFF2636 - hypothetical protein, at 321,536 to 321,868 GFF2636 GFF2637 - hypothetical protein, at 321,868 to 322,140 GFF2637 GFF2638 - Type IV secretion system protein virB4, at 322,153 to 324,582 GFF2638 GFF2639 - hypothetical protein, at 324,579 to 325,313 GFF2639 GFF2640 - hypothetical protein, at 325,323 to 325,583 GFF2640 GFF2641 - hypothetical protein, at 325,580 to 326,860 GFF2641 Position (kb) 322 323 324 325Strain fitness (log2 ratio) -2 -1 0 1 2at 321.560 kb on + strandat 321.561 kb on - strandat 321.570 kb on + strand, within GFF2636at 321.570 kb on + strand, within GFF2636at 321.570 kb on + strand, within GFF2636at 321.570 kb on + strand, within GFF2636at 321.571 kb on - strand, within GFF2636at 321.571 kb on - strand, within GFF2636at 321.571 kb on - strand, within GFF2636at 321.577 kb on + strand, within GFF2636at 321.577 kb on + strand, within GFF2636at 321.578 kb on - strand, within GFF2636at 321.679 kb on + strand, within GFF2636at 321.680 kb on - strand, within GFF2636at 321.680 kb on - strand, within GFF2636at 321.704 kb on - strand, within GFF2636at 322.201 kb on + strandat 322.201 kb on + strandat 322.201 kb on + strandat 322.201 kb on + strandat 322.205 kb on + strandat 322.507 kb on + strand, within GFF2638at 322.507 kb on + strand, within GFF2638at 322.507 kb on + strand, within GFF2638at 322.570 kb on + strand, within GFF2638at 322.570 kb on + strand, within GFF2638at 322.571 kb on - strand, within GFF2638at 322.571 kb on - strand, within GFF2638at 322.571 kb on - strand, within GFF2638at 322.664 kb on - strand, within GFF2638at 322.708 kb on + strand, within GFF2638at 322.709 kb on - strand, within GFF2638at 322.709 kb on - strand, within GFF2638at 322.709 kb on - strand, within GFF2638at 322.709 kb on - strand, within GFF2638at 322.769 kb on - strand, within GFF2638at 322.769 kb on - strand, within GFF2638at 322.876 kb on - strand, within GFF2638at 322.918 kb on + strand, within GFF2638at 323.143 kb on + strand, within GFF2638at 323.143 kb on + strand, within GFF2638at 323.302 kb on + strand, within GFF2638at 323.302 kb on + strand, within GFF2638at 323.302 kb on + strand, within GFF2638at 323.419 kb on + strand, within GFF2638at 323.420 kb on - strand, within GFF2638at 323.555 kb on - strand, within GFF2638at 323.893 kb on + strand, within GFF2638at 323.894 kb on - strand, within GFF2638at 324.019 kb on + strand, within GFF2638at 324.019 kb on + strand, within GFF2638at 324.020 kb on - strand, within GFF2638at 324.020 kb on - strand, within GFF2638at 324.020 kb on - strand, within GFF2638at 324.020 kb on - strand, within GFF2638at 324.020 kb on - strand, within GFF2638at 324.020 kb on - strand, within GFF2638at 324.256 kb on - strand, within GFF2638at 324.358 kb on + strandat 324.358 kb on + strandat 324.358 kb on + strandat 324.358 kb on + strandat 324.359 kb on - strandat 324.362 kb on - strandat 324.362 kb on - strandat 324.362 kb on - strandat 324.474 kb on - strandat 324.658 kb on - strand, within GFF2639at 324.658 kb on - strand, within GFF2639at 324.658 kb on - strand, within GFF2639at 324.658 kb on - strand, within GFF2639at 324.658 kb on - strand, within GFF2639at 324.658 kb on - strand, within GFF2639at 324.667 kb on - strand, within GFF2639at 324.667 kb on - strand, within GFF2639at 324.667 kb on - strand, within GFF2639at 324.681 kb on + strand, within GFF2639at 324.681 kb on + strand, within GFF2639at 324.681 kb on + strand, within GFF2639at 324.682 kb on - strand, within GFF2639at 324.682 kb on - strand, within GFF2639at 324.682 kb on - strand, within GFF2639at 324.801 kb on + strand, within GFF2639at 324.801 kb on + strand, within GFF2639at 324.801 kb on + strand, within GFF2639at 324.801 kb on + strand, within GFF2639at 324.801 kb on + strand, within GFF2639at 324.802 kb on - strand, within GFF2639at 324.802 kb on - strand, within GFF2639at 324.802 kb on - strand, within GFF2639at 324.876 kb on + strand, within GFF2639at 324.877 kb on - strand, within GFF2639

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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321,560 + -0.3
321,561 - +0.2
321,570 + GFF2636 0.10 +1.2
321,570 + GFF2636 0.10 -0.0
321,570 + GFF2636 0.10 +0.2
321,570 + GFF2636 0.10 +0.2
321,571 - GFF2636 0.11 +0.2
321,571 - GFF2636 0.11 -0.1
321,571 - GFF2636 0.11 -1.2
321,577 + GFF2636 0.12 +0.4
321,577 + GFF2636 0.12 -0.0
321,578 - GFF2636 0.13 -0.3
321,679 + GFF2636 0.43 +1.1
321,680 - GFF2636 0.43 +0.5
321,680 - GFF2636 0.43 +0.2
321,704 - GFF2636 0.50 -0.1
322,201 + -0.0
322,201 + -0.1
322,201 + -0.5
322,201 + -0.5
322,205 + +0.0
322,507 + GFF2638 0.15 -1.9
322,507 + GFF2638 0.15 -0.2
322,507 + GFF2638 0.15 +1.0
322,570 + GFF2638 0.17 +0.7
322,570 + GFF2638 0.17 +1.9
322,571 - GFF2638 0.17 +0.8
322,571 - GFF2638 0.17 +0.6
322,571 - GFF2638 0.17 -1.2
322,664 - GFF2638 0.21 -0.0
322,708 + GFF2638 0.23 +0.8
322,709 - GFF2638 0.23 -0.1
322,709 - GFF2638 0.23 -0.4
322,709 - GFF2638 0.23 +0.7
322,709 - GFF2638 0.23 -0.0
322,769 - GFF2638 0.25 +1.0
322,769 - GFF2638 0.25 -0.8
322,876 - GFF2638 0.30 -0.5
322,918 + GFF2638 0.31 +0.2
323,143 + GFF2638 0.41 -0.3
323,143 + GFF2638 0.41 +0.9
323,302 + GFF2638 0.47 -0.5
323,302 + GFF2638 0.47 +1.5
323,302 + GFF2638 0.47 +0.8
323,419 + GFF2638 0.52 +0.7
323,420 - GFF2638 0.52 +0.1
323,555 - GFF2638 0.58 +1.3
323,893 + GFF2638 0.72 +0.2
323,894 - GFF2638 0.72 -0.3
324,019 + GFF2638 0.77 +0.5
324,019 + GFF2638 0.77 -0.3
324,020 - GFF2638 0.77 +0.6
324,020 - GFF2638 0.77 +0.1
324,020 - GFF2638 0.77 -0.3
324,020 - GFF2638 0.77 +0.6
324,020 - GFF2638 0.77 +0.3
324,020 - GFF2638 0.77 +0.2
324,256 - GFF2638 0.87 -1.5
324,358 + +1.7
324,358 + +0.3
324,358 + +1.7
324,358 + +1.5
324,359 - -0.3
324,362 - +0.3
324,362 - -0.8
324,362 - +0.9
324,474 - +0.3
324,658 - GFF2639 0.11 +0.3
324,658 - GFF2639 0.11 +0.7
324,658 - GFF2639 0.11 -0.1
324,658 - GFF2639 0.11 +1.0
324,658 - GFF2639 0.11 +0.7
324,658 - GFF2639 0.11 +0.9
324,667 - GFF2639 0.12 +1.1
324,667 - GFF2639 0.12 -0.6
324,667 - GFF2639 0.12 -0.1
324,681 + GFF2639 0.14 -0.1
324,681 + GFF2639 0.14 -0.7
324,681 + GFF2639 0.14 +0.1
324,682 - GFF2639 0.14 -1.2
324,682 - GFF2639 0.14 -0.0
324,682 - GFF2639 0.14 -0.4
324,801 + GFF2639 0.30 -0.6
324,801 + GFF2639 0.30 +0.4
324,801 + GFF2639 0.30 +0.8
324,801 + GFF2639 0.30 -0.1
324,801 + GFF2639 0.30 -0.3
324,802 - GFF2639 0.30 -0.1
324,802 - GFF2639 0.30 -0.6
324,802 - GFF2639 0.30 -0.0
324,876 + GFF2639 0.40 -0.3
324,877 - GFF2639 0.41 +0.1

Or see this region's nucleotide sequence