Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2634 and GFF2635 are separated by 261 nucleotides GFF2635 and GFF2636 overlap by 4 nucleotides GFF2636 and GFF2637 overlap by 1 nucleotides GFF2637 and GFF2638 are separated by 12 nucleotides
GFF2634 - HTH-type transcriptional regulator DmlR, at 319,380 to 320,291
GFF2634
GFF2635 - hypothetical protein, at 320,553 to 321,539
GFF2635
GFF2636 - hypothetical protein, at 321,536 to 321,868
GFF2636
GFF2637 - hypothetical protein, at 321,868 to 322,140
GFF2637
GFF2638 - Type IV secretion system protein virB4, at 322,153 to 324,582
GFF2638
Position (kb) 320
321
322 Strain fitness (log2 ratio) -2
-1
0
1
2 at 319.576 kb on - strand, within GFF2634 at 319.576 kb on - strand, within GFF2634 at 319.666 kb on + strand, within GFF2634 at 319.666 kb on + strand, within GFF2634 at 319.666 kb on + strand, within GFF2634 at 319.666 kb on + strand, within GFF2634 at 319.667 kb on - strand, within GFF2634 at 319.667 kb on - strand, within GFF2634 at 319.667 kb on - strand, within GFF2634 at 319.667 kb on - strand, within GFF2634 at 319.780 kb on + strand, within GFF2634 at 319.780 kb on + strand, within GFF2634 at 319.780 kb on + strand, within GFF2634 at 319.780 kb on + strand, within GFF2634 at 319.780 kb on + strand, within GFF2634 at 319.781 kb on - strand, within GFF2634 at 319.781 kb on - strand, within GFF2634 at 319.781 kb on - strand, within GFF2634 at 319.812 kb on + strand, within GFF2634 at 319.813 kb on - strand, within GFF2634 at 319.890 kb on + strand, within GFF2634 at 319.891 kb on - strand, within GFF2634 at 319.999 kb on + strand, within GFF2634 at 320.160 kb on + strand, within GFF2634 at 320.160 kb on + strand, within GFF2634 at 320.160 kb on + strand, within GFF2634 at 320.160 kb on + strand, within GFF2634 at 320.161 kb on - strand, within GFF2634 at 320.161 kb on - strand, within GFF2634 at 320.161 kb on - strand, within GFF2634 at 320.161 kb on - strand, within GFF2634 at 320.161 kb on - strand, within GFF2634 at 320.193 kb on + strand, within GFF2634 at 320.193 kb on + strand, within GFF2634 at 320.193 kb on + strand, within GFF2634 at 320.194 kb on - strand, within GFF2634 at 320.194 kb on - strand, within GFF2634 at 320.208 kb on + strand at 320.209 kb on - strand at 320.324 kb on + strand at 320.329 kb on + strand at 320.330 kb on - strand at 320.499 kb on - strand at 320.499 kb on - strand at 320.552 kb on + strand at 320.552 kb on + strand at 320.552 kb on + strand at 320.552 kb on + strand at 320.552 kb on + strand at 320.553 kb on - strand at 320.553 kb on - strand at 320.645 kb on + strand at 320.861 kb on - strand, within GFF2635 at 320.861 kb on - strand, within GFF2635 at 320.934 kb on + strand, within GFF2635 at 320.934 kb on + strand, within GFF2635 at 320.934 kb on + strand, within GFF2635 at 320.934 kb on + strand, within GFF2635 at 321.560 kb on + strand at 321.561 kb on - strand at 321.570 kb on + strand, within GFF2636 at 321.570 kb on + strand, within GFF2636 at 321.570 kb on + strand, within GFF2636 at 321.570 kb on + strand, within GFF2636 at 321.571 kb on - strand, within GFF2636 at 321.571 kb on - strand, within GFF2636 at 321.571 kb on - strand, within GFF2636 at 321.577 kb on + strand, within GFF2636 at 321.577 kb on + strand, within GFF2636 at 321.578 kb on - strand, within GFF2636 at 321.679 kb on + strand, within GFF2636 at 321.680 kb on - strand, within GFF2636 at 321.680 kb on - strand, within GFF2636 at 321.704 kb on - strand, within GFF2636 at 322.201 kb on + strand at 322.201 kb on + strand at 322.201 kb on + strand at 322.201 kb on + strand at 322.205 kb on + strand at 322.507 kb on + strand, within GFF2638 at 322.507 kb on + strand, within GFF2638 at 322.507 kb on + strand, within GFF2638
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 319,576 - GFF2634 0.21 -0.4 319,576 - GFF2634 0.21 +0.1 319,666 + GFF2634 0.31 +0.1 319,666 + GFF2634 0.31 +0.3 319,666 + GFF2634 0.31 +0.5 319,666 + GFF2634 0.31 +0.2 319,667 - GFF2634 0.31 +0.1 319,667 - GFF2634 0.31 +0.1 319,667 - GFF2634 0.31 -0.8 319,667 - GFF2634 0.31 +0.0 319,780 + GFF2634 0.44 -0.3 319,780 + GFF2634 0.44 -0.7 319,780 + GFF2634 0.44 -0.3 319,780 + GFF2634 0.44 +0.3 319,780 + GFF2634 0.44 +0.5 319,781 - GFF2634 0.44 -0.9 319,781 - GFF2634 0.44 -0.9 319,781 - GFF2634 0.44 -1.2 319,812 + GFF2634 0.47 -0.2 319,813 - GFF2634 0.47 +0.1 319,890 + GFF2634 0.56 +1.1 319,891 - GFF2634 0.56 -0.2 319,999 + GFF2634 0.68 -0.3 320,160 + GFF2634 0.86 +0.0 320,160 + GFF2634 0.86 +0.4 320,160 + GFF2634 0.86 -0.8 320,160 + GFF2634 0.86 -1.4 320,161 - GFF2634 0.86 -0.5 320,161 - GFF2634 0.86 -0.7 320,161 - GFF2634 0.86 +0.7 320,161 - GFF2634 0.86 +0.3 320,161 - GFF2634 0.86 +0.3 320,193 + GFF2634 0.89 +0.3 320,193 + GFF2634 0.89 +0.4 320,193 + GFF2634 0.89 +0.0 320,194 - GFF2634 0.89 -0.3 320,194 - GFF2634 0.89 -0.5 320,208 + +0.1 320,209 - +0.4 320,324 + +0.6 320,329 + -0.0 320,330 - +1.5 320,499 - +0.3 320,499 - +1.0 320,552 + -0.9 320,552 + -0.1 320,552 + +1.4 320,552 + +0.8 320,552 + +0.2 320,553 - +0.1 320,553 - +0.9 320,645 + -0.8 320,861 - GFF2635 0.31 -0.2 320,861 - GFF2635 0.31 -1.0 320,934 + GFF2635 0.39 +1.9 320,934 + GFF2635 0.39 +1.6 320,934 + GFF2635 0.39 +1.2 320,934 + GFF2635 0.39 +0.1 321,560 + -0.3 321,561 - +0.2 321,570 + GFF2636 0.10 +1.2 321,570 + GFF2636 0.10 -0.0 321,570 + GFF2636 0.10 +0.2 321,570 + GFF2636 0.10 +0.2 321,571 - GFF2636 0.11 +0.2 321,571 - GFF2636 0.11 -0.1 321,571 - GFF2636 0.11 -1.2 321,577 + GFF2636 0.12 +0.4 321,577 + GFF2636 0.12 -0.0 321,578 - GFF2636 0.13 -0.3 321,679 + GFF2636 0.43 +1.1 321,680 - GFF2636 0.43 +0.5 321,680 - GFF2636 0.43 +0.2 321,704 - GFF2636 0.50 -0.1 322,201 + -0.0 322,201 + -0.1 322,201 + -0.5 322,201 + -0.5 322,205 + +0.0 322,507 + GFF2638 0.15 -1.9 322,507 + GFF2638 0.15 -0.2 322,507 + GFF2638 0.15 +1.0
Or see this region's nucleotide sequence