Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2625 and GFF2626 are separated by 337 nucleotides GFF2626 and GFF2627 are separated by 36 nucleotides GFF2627 and GFF2628 overlap by 14 nucleotides GFF2628 and GFF2629 are separated by 38 nucleotides
GFF2625 - Imidazolonepropionase, at 310,545 to 312,389
GFF2625
GFF2626 - L-carnitine dehydrogenase, at 312,727 to 313,020
GFF2626
GFF2627 - L-carnitine dehydrogenase, at 313,057 to 313,440
GFF2627
GFF2628 - Gluconate 5-dehydrogenase, at 313,427 to 314,206
GFF2628
GFF2629 - hypothetical protein, at 314,245 to 314,757
GFF2629
Position (kb) 313
314 Strain fitness (log2 ratio) -1
0
1
2 at 312.201 kb on + strand, within GFF2625 at 312.201 kb on + strand, within GFF2625 at 312.203 kb on + strand, within GFF2625 at 312.219 kb on + strand at 312.220 kb on - strand at 312.293 kb on + strand at 312.293 kb on + strand at 312.293 kb on + strand at 312.293 kb on + strand at 312.294 kb on - strand at 312.294 kb on - strand at 312.294 kb on - strand at 312.344 kb on + strand at 312.344 kb on + strand at 312.345 kb on - strand at 312.365 kb on + strand at 312.365 kb on + strand at 312.365 kb on + strand at 312.366 kb on - strand at 312.374 kb on + strand at 312.375 kb on - strand at 312.375 kb on - strand at 312.375 kb on - strand at 312.375 kb on - strand at 312.375 kb on - strand at 312.375 kb on - strand at 312.395 kb on + strand at 312.571 kb on + strand at 312.745 kb on + strand at 312.745 kb on + strand at 312.745 kb on + strand at 312.745 kb on + strand at 312.745 kb on + strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 313.105 kb on + strand, within GFF2627 at 313.105 kb on + strand, within GFF2627 at 313.105 kb on + strand, within GFF2627 at 313.105 kb on + strand, within GFF2627 at 313.106 kb on - strand, within GFF2627 at 313.166 kb on + strand, within GFF2627 at 313.167 kb on - strand, within GFF2627 at 313.212 kb on + strand, within GFF2627 at 313.212 kb on + strand, within GFF2627 at 313.213 kb on - strand, within GFF2627 at 313.213 kb on - strand, within GFF2627 at 313.231 kb on + strand, within GFF2627 at 313.232 kb on - strand, within GFF2627 at 313.256 kb on - strand, within GFF2627 at 313.256 kb on - strand, within GFF2627 at 313.256 kb on - strand, within GFF2627 at 313.256 kb on - strand, within GFF2627 at 313.606 kb on + strand, within GFF2628 at 313.606 kb on + strand, within GFF2628 at 313.607 kb on - strand, within GFF2628 at 313.607 kb on - strand, within GFF2628 at 313.913 kb on + strand, within GFF2628 at 313.913 kb on + strand, within GFF2628 at 313.914 kb on - strand, within GFF2628 at 313.995 kb on + strand, within GFF2628 at 313.996 kb on + strand, within GFF2628 at 313.996 kb on + strand, within GFF2628 at 313.996 kb on + strand, within GFF2628 at 313.996 kb on + strand, within GFF2628 at 313.997 kb on - strand, within GFF2628 at 313.997 kb on - strand, within GFF2628 at 314.060 kb on - strand, within GFF2628 at 314.155 kb on + strand at 314.155 kb on + strand at 314.155 kb on + strand at 314.155 kb on + strand at 314.155 kb on + strand at 314.155 kb on + strand at 314.155 kb on + strand at 314.156 kb on - strand at 314.156 kb on - strand at 314.156 kb on - strand at 314.245 kb on + strand at 314.304 kb on - strand, within GFF2629 at 314.304 kb on - strand, within GFF2629
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 312,201 + GFF2625 0.90 -0.0 312,201 + GFF2625 0.90 -1.7 312,203 + GFF2625 0.90 -0.2 312,219 + +1.1 312,220 - +0.9 312,293 + +0.0 312,293 + +0.1 312,293 + -0.1 312,293 + +0.7 312,294 - -0.4 312,294 - +0.3 312,294 - -0.3 312,344 + +0.2 312,344 + -0.0 312,345 - +0.0 312,365 + -1.5 312,365 + +0.7 312,365 + +0.0 312,366 - -1.6 312,374 + -0.8 312,375 - -0.4 312,375 - -0.9 312,375 - +0.2 312,375 - -0.3 312,375 - -0.1 312,375 - +0.0 312,395 + +0.3 312,571 + +0.1 312,745 + +0.1 312,745 + -0.4 312,745 + +0.2 312,745 + +0.7 312,745 + +0.0 312,746 - -0.4 312,746 - +0.4 312,746 - -0.4 312,746 - -0.3 312,746 - +0.4 312,746 - +0.1 312,746 - +0.1 312,746 - -0.4 313,105 + GFF2627 0.12 +0.5 313,105 + GFF2627 0.12 -1.4 313,105 + GFF2627 0.12 +0.7 313,105 + GFF2627 0.12 +0.1 313,106 - GFF2627 0.13 +1.1 313,166 + GFF2627 0.28 +0.1 313,167 - GFF2627 0.29 -0.7 313,212 + GFF2627 0.40 -0.5 313,212 + GFF2627 0.40 +0.4 313,213 - GFF2627 0.41 +0.9 313,213 - GFF2627 0.41 +0.1 313,231 + GFF2627 0.45 -0.1 313,232 - GFF2627 0.46 -0.1 313,256 - GFF2627 0.52 +0.3 313,256 - GFF2627 0.52 -0.1 313,256 - GFF2627 0.52 -0.1 313,256 - GFF2627 0.52 -1.2 313,606 + GFF2628 0.23 +0.4 313,606 + GFF2628 0.23 -0.3 313,607 - GFF2628 0.23 +0.1 313,607 - GFF2628 0.23 +0.4 313,913 + GFF2628 0.62 -1.6 313,913 + GFF2628 0.62 +0.1 313,914 - GFF2628 0.62 -0.8 313,995 + GFF2628 0.73 -0.4 313,996 + GFF2628 0.73 +0.1 313,996 + GFF2628 0.73 -0.3 313,996 + GFF2628 0.73 -0.6 313,996 + GFF2628 0.73 +0.7 313,997 - GFF2628 0.73 -0.4 313,997 - GFF2628 0.73 -0.2 314,060 - GFF2628 0.81 -0.2 314,155 + +0.1 314,155 + -0.2 314,155 + +2.0 314,155 + -0.9 314,155 + -0.4 314,155 + +0.9 314,155 + +0.4 314,156 - -0.9 314,156 - +2.0 314,156 - +0.1 314,245 + +0.1 314,304 - GFF2629 0.12 +0.1 314,304 - GFF2629 0.12 -0.2
Or see this region's nucleotide sequence