Strain Fitness in Xanthobacter sp. DMC5 around GFF2588

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2587 and GFF2588 are separated by 176 nucleotidesGFF2588 and GFF2589 are separated by 19 nucleotidesGFF2589 and GFF2590 overlap by 14 nucleotides GFF2587 - Acylamidase, at 269,457 to 270,776 GFF2587 GFF2588 - Aliphatic amidase expression-regulating protein, at 270,953 to 272,143 GFF2588 GFF2589 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 272,163 to 272,861 GFF2589 GFF2590 - Linearmycin resistance ATP-binding protein LnrL, at 272,848 to 273,582 GFF2590 Position (kb) 270 271 272 273Strain fitness (log2 ratio) -2 -1 0 1at 270.080 kb on + strand, within GFF2587at 270.080 kb on + strand, within GFF2587at 270.081 kb on - strand, within GFF2587at 270.081 kb on - strand, within GFF2587at 270.103 kb on + strand, within GFF2587at 270.104 kb on - strand, within GFF2587at 270.470 kb on + strand, within GFF2587at 270.470 kb on + strand, within GFF2587at 270.471 kb on - strand, within GFF2587at 270.471 kb on - strand, within GFF2587at 270.471 kb on - strand, within GFF2587at 270.471 kb on - strand, within GFF2587at 270.471 kb on - strand, within GFF2587at 270.542 kb on + strand, within GFF2587at 270.542 kb on + strand, within GFF2587at 270.542 kb on + strand, within GFF2587at 270.543 kb on - strand, within GFF2587at 270.799 kb on + strandat 270.799 kb on + strandat 270.800 kb on - strandat 270.832 kb on + strandat 270.832 kb on + strandat 270.832 kb on + strandat 270.832 kb on + strandat 270.832 kb on + strandat 270.832 kb on + strandat 270.833 kb on - strandat 270.833 kb on - strandat 270.880 kb on - strandat 270.954 kb on + strandat 270.954 kb on + strandat 270.954 kb on + strandat 270.955 kb on - strandat 270.955 kb on - strandat 271.073 kb on + strand, within GFF2588at 271.073 kb on + strand, within GFF2588at 271.074 kb on - strand, within GFF2588at 271.074 kb on - strand, within GFF2588at 271.074 kb on - strand, within GFF2588at 271.074 kb on - strand, within GFF2588at 271.074 kb on - strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.263 kb on + strand, within GFF2588at 271.263 kb on + strand, within GFF2588at 271.263 kb on + strand, within GFF2588at 271.263 kb on + strand, within GFF2588at 271.263 kb on + strand, within GFF2588at 271.264 kb on - strand, within GFF2588at 271.264 kb on - strand, within GFF2588at 271.264 kb on - strand, within GFF2588at 271.311 kb on + strand, within GFF2588at 271.312 kb on - strand, within GFF2588at 271.312 kb on - strand, within GFF2588at 271.312 kb on - strand, within GFF2588at 271.416 kb on + strand, within GFF2588at 271.416 kb on + strand, within GFF2588at 271.416 kb on + strand, within GFF2588at 271.417 kb on - strand, within GFF2588at 271.530 kb on + strand, within GFF2588at 271.530 kb on + strand, within GFF2588at 271.530 kb on + strand, within GFF2588at 271.530 kb on + strand, within GFF2588at 271.531 kb on - strand, within GFF2588at 271.531 kb on - strand, within GFF2588at 271.565 kb on + strand, within GFF2588at 271.635 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.747 kb on - strand, within GFF2588at 271.747 kb on - strand, within GFF2588at 271.891 kb on + strand, within GFF2588at 271.983 kb on + strand, within GFF2588at 271.983 kb on + strand, within GFF2588at 271.983 kb on + strand, within GFF2588at 271.983 kb on + strand, within GFF2588at 272.509 kb on + strand, within GFF2589at 272.509 kb on + strand, within GFF2589at 272.510 kb on - strand, within GFF2589at 272.510 kb on - strand, within GFF2589at 272.531 kb on + strand, within GFF2589at 272.588 kb on + strand, within GFF2589at 272.588 kb on + strand, within GFF2589at 272.589 kb on - strand, within GFF2589at 272.623 kb on + strand, within GFF2589at 272.623 kb on + strand, within GFF2589at 272.624 kb on - strand, within GFF2589at 272.624 kb on - strand, within GFF2589at 272.624 kb on - strand, within GFF2589at 272.624 kb on - strand, within GFF2589at 272.624 kb on - strand, within GFF2589at 272.700 kb on + strand, within GFF2589at 272.701 kb on - strand, within GFF2589at 272.701 kb on - strand, within GFF2589at 272.701 kb on - strand, within GFF2589at 272.878 kb on + strandat 272.878 kb on + strandat 272.878 kb on + strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.882 kb on + strandat 272.882 kb on + strandat 272.882 kb on + strandat 272.883 kb on - strandat 272.883 kb on - strandat 272.883 kb on - strandat 272.883 kb on - strandat 272.883 kb on - strandat 272.883 kb on - strandat 272.956 kb on + strand, within GFF2590at 273.040 kb on + strand, within GFF2590at 273.040 kb on + strand, within GFF2590

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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270,080 + GFF2587 0.47 +0.6
270,080 + GFF2587 0.47 -0.8
270,081 - GFF2587 0.47 -0.2
270,081 - GFF2587 0.47 -0.4
270,103 + GFF2587 0.49 +1.5
270,104 - GFF2587 0.49 -0.7
270,470 + GFF2587 0.77 -0.6
270,470 + GFF2587 0.77 +1.5
270,471 - GFF2587 0.77 +0.2
270,471 - GFF2587 0.77 -0.5
270,471 - GFF2587 0.77 +0.2
270,471 - GFF2587 0.77 +1.6
270,471 - GFF2587 0.77 -0.1
270,542 + GFF2587 0.82 +0.2
270,542 + GFF2587 0.82 -0.5
270,542 + GFF2587 0.82 +0.3
270,543 - GFF2587 0.82 +0.7
270,799 + +0.5
270,799 + -2.0
270,800 - -0.0
270,832 + +0.8
270,832 + -0.1
270,832 + -0.1
270,832 + +0.4
270,832 + +0.4
270,832 + +0.2
270,833 - -0.4
270,833 - +0.2
270,880 - +0.5
270,954 + +0.8
270,954 + -0.5
270,954 + -0.2
270,955 - +1.0
270,955 - -0.4
271,073 + GFF2588 0.10 -0.1
271,073 + GFF2588 0.10 +0.3
271,074 - GFF2588 0.10 +0.2
271,074 - GFF2588 0.10 +0.9
271,074 - GFF2588 0.10 -0.9
271,074 - GFF2588 0.10 -0.1
271,074 - GFF2588 0.10 -0.5
271,185 + GFF2588 0.19 -0.1
271,185 + GFF2588 0.19 -1.2
271,185 + GFF2588 0.19 +0.5
271,185 + GFF2588 0.19 -0.3
271,185 + GFF2588 0.19 -0.2
271,185 + GFF2588 0.19 -0.9
271,185 + GFF2588 0.19 -1.0
271,185 + GFF2588 0.19 +0.3
271,185 + GFF2588 0.19 -0.5
271,185 + GFF2588 0.19 +0.2
271,185 + GFF2588 0.19 -0.0
271,185 + GFF2588 0.19 +0.1
271,186 - GFF2588 0.20 +0.4
271,186 - GFF2588 0.20 +0.7
271,186 - GFF2588 0.20 -0.3
271,186 - GFF2588 0.20 -1.2
271,186 - GFF2588 0.20 -0.7
271,186 - GFF2588 0.20 -0.8
271,186 - GFF2588 0.20 +0.5
271,186 - GFF2588 0.20 +0.1
271,186 - GFF2588 0.20 -0.0
271,186 - GFF2588 0.20 +0.3
271,186 - GFF2588 0.20 +0.5
271,186 - GFF2588 0.20 -0.3
271,263 + GFF2588 0.26 +0.0
271,263 + GFF2588 0.26 -1.0
271,263 + GFF2588 0.26 -0.2
271,263 + GFF2588 0.26 -0.2
271,263 + GFF2588 0.26 -0.2
271,264 - GFF2588 0.26 +0.1
271,264 - GFF2588 0.26 -0.9
271,264 - GFF2588 0.26 -1.2
271,311 + GFF2588 0.30 +0.5
271,312 - GFF2588 0.30 +0.4
271,312 - GFF2588 0.30 -0.1
271,312 - GFF2588 0.30 -1.5
271,416 + GFF2588 0.39 -1.0
271,416 + GFF2588 0.39 +0.1
271,416 + GFF2588 0.39 +0.4
271,417 - GFF2588 0.39 -0.3
271,530 + GFF2588 0.48 -0.0
271,530 + GFF2588 0.48 +1.1
271,530 + GFF2588 0.48 +0.2
271,530 + GFF2588 0.48 +0.8
271,531 - GFF2588 0.49 +0.0
271,531 - GFF2588 0.49 +0.6
271,565 + GFF2588 0.51 +0.3
271,635 + GFF2588 0.57 +0.5
271,746 + GFF2588 0.67 +0.8
271,746 + GFF2588 0.67 +1.3
271,746 + GFF2588 0.67 -0.6
271,746 + GFF2588 0.67 -1.1
271,746 + GFF2588 0.67 +0.6
271,746 + GFF2588 0.67 -0.2
271,747 - GFF2588 0.67 +0.4
271,747 - GFF2588 0.67 -0.4
271,891 + GFF2588 0.79 +0.0
271,983 + GFF2588 0.86 +0.1
271,983 + GFF2588 0.86 +0.9
271,983 + GFF2588 0.86 +0.2
271,983 + GFF2588 0.86 -1.1
272,509 + GFF2589 0.49 +0.1
272,509 + GFF2589 0.49 +0.5
272,510 - GFF2589 0.50 +0.3
272,510 - GFF2589 0.50 -0.2
272,531 + GFF2589 0.53 +0.7
272,588 + GFF2589 0.61 +0.3
272,588 + GFF2589 0.61 -0.2
272,589 - GFF2589 0.61 +0.3
272,623 + GFF2589 0.66 +0.0
272,623 + GFF2589 0.66 +0.2
272,624 - GFF2589 0.66 +0.2
272,624 - GFF2589 0.66 +0.2
272,624 - GFF2589 0.66 -0.7
272,624 - GFF2589 0.66 -0.0
272,624 - GFF2589 0.66 +0.2
272,700 + GFF2589 0.77 -0.1
272,701 - GFF2589 0.77 +1.2
272,701 - GFF2589 0.77 +0.4
272,701 - GFF2589 0.77 -0.8
272,878 + -0.7
272,878 + -0.7
272,878 + +0.7
272,879 - -0.6
272,879 - -0.7
272,879 - -0.4
272,879 - -1.0
272,879 - -0.2
272,879 - -0.5
272,879 - +0.3
272,879 - -0.6
272,879 - -0.2
272,882 + -0.7
272,882 + +0.2
272,882 + -0.2
272,883 - -0.3
272,883 - +0.7
272,883 - -0.4
272,883 - -0.6
272,883 - +0.3
272,883 - +0.1
272,956 + GFF2590 0.15 -0.1
273,040 + GFF2590 0.26 +0.2
273,040 + GFF2590 0.26 -0.6

Or see this region's nucleotide sequence