Strain Fitness in Xanthobacter sp. DMC5 around GFF2580

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2579 and GFF2580 are separated by 60 nucleotidesGFF2580 and GFF2581 are separated by 304 nucleotides GFF2579 - Long-chain-fatty-acid--CoA ligase, at 259,105 to 260,634 GFF2579 GFF2580 - hypothetical protein, at 260,695 to 262,065 GFF2580 GFF2581 - HTH-type transcriptional repressor GlaR, at 262,370 to 263,044 GFF2581 Position (kb) 260 261 262 263Strain fitness (log2 ratio) -1 0 1at 259.702 kb on - strand, within GFF2579at 259.865 kb on + strand, within GFF2579at 259.866 kb on - strand, within GFF2579at 259.937 kb on - strand, within GFF2579at 260.061 kb on - strand, within GFF2579at 260.144 kb on + strand, within GFF2579at 260.144 kb on + strand, within GFF2579at 260.145 kb on - strand, within GFF2579at 260.145 kb on - strand, within GFF2579at 260.145 kb on - strand, within GFF2579at 260.194 kb on - strand, within GFF2579at 260.351 kb on + strand, within GFF2579at 260.351 kb on + strand, within GFF2579at 260.351 kb on + strand, within GFF2579at 260.352 kb on - strand, within GFF2579at 260.352 kb on - strand, within GFF2579at 260.370 kb on + strand, within GFF2579at 260.370 kb on + strand, within GFF2579at 260.370 kb on + strand, within GFF2579at 260.370 kb on + strand, within GFF2579at 260.371 kb on - strand, within GFF2579at 260.371 kb on - strand, within GFF2579at 260.371 kb on - strand, within GFF2579at 260.372 kb on + strand, within GFF2579at 260.372 kb on + strand, within GFF2579at 260.372 kb on + strand, within GFF2579at 260.423 kb on + strand, within GFF2579at 260.423 kb on + strand, within GFF2579at 260.423 kb on + strand, within GFF2579at 260.424 kb on - strand, within GFF2579at 260.540 kb on + strandat 260.540 kb on + strandat 260.540 kb on + strandat 260.541 kb on - strandat 260.541 kb on - strandat 260.541 kb on - strandat 260.822 kb on + strandat 260.822 kb on + strandat 260.823 kb on - strandat 260.828 kb on + strandat 260.828 kb on + strandat 260.828 kb on + strandat 260.828 kb on + strandat 260.828 kb on + strandat 260.828 kb on + strandat 260.829 kb on - strandat 260.829 kb on - strandat 260.978 kb on + strand, within GFF2580at 260.979 kb on - strand, within GFF2580at 260.979 kb on - strand, within GFF2580at 260.979 kb on - strand, within GFF2580at 260.979 kb on - strand, within GFF2580at 260.982 kb on - strand, within GFF2580at 260.982 kb on - strand, within GFF2580at 260.982 kb on - strand, within GFF2580at 260.982 kb on - strand, within GFF2580at 261.272 kb on + strand, within GFF2580at 261.272 kb on + strand, within GFF2580at 261.273 kb on - strand, within GFF2580at 261.273 kb on - strand, within GFF2580at 261.419 kb on + strand, within GFF2580at 261.481 kb on + strand, within GFF2580at 261.481 kb on + strand, within GFF2580at 261.481 kb on + strand, within GFF2580at 261.491 kb on + strand, within GFF2580at 261.491 kb on + strand, within GFF2580at 261.773 kb on + strand, within GFF2580at 261.773 kb on + strand, within GFF2580at 261.774 kb on - strand, within GFF2580at 261.774 kb on - strand, within GFF2580at 261.774 kb on - strand, within GFF2580at 261.774 kb on - strand, within GFF2580at 261.774 kb on - strand, within GFF2580at 261.774 kb on - strand, within GFF2580at 261.774 kb on - strand, within GFF2580at 261.872 kb on + strand, within GFF2580at 261.873 kb on - strand, within GFF2580at 261.987 kb on + strandat 261.987 kb on + strandat 261.987 kb on + strandat 261.987 kb on + strandat 261.987 kb on + strandat 261.988 kb on - strandat 261.988 kb on - strandat 261.988 kb on - strandat 262.258 kb on + strandat 262.739 kb on + strand, within GFF2581at 262.739 kb on + strand, within GFF2581at 262.739 kb on + strand, within GFF2581at 262.740 kb on - strand, within GFF2581at 262.740 kb on - strand, within GFF2581at 262.740 kb on - strand, within GFF2581at 262.775 kb on + strand, within GFF2581at 262.775 kb on + strand, within GFF2581at 262.776 kb on - strand, within GFF2581at 262.776 kb on - strand, within GFF2581at 262.776 kb on - strand, within GFF2581at 262.776 kb on - strand, within GFF2581at 262.841 kb on + strand, within GFF2581at 263.056 kb on + strandat 263.056 kb on + strandat 263.056 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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259,702 - GFF2579 0.39 +0.1
259,865 + GFF2579 0.50 +0.9
259,866 - GFF2579 0.50 +0.7
259,937 - GFF2579 0.54 +0.2
260,061 - GFF2579 0.62 +0.4
260,144 + GFF2579 0.68 -0.1
260,144 + GFF2579 0.68 -0.7
260,145 - GFF2579 0.68 +0.3
260,145 - GFF2579 0.68 -0.2
260,145 - GFF2579 0.68 +0.4
260,194 - GFF2579 0.71 -0.2
260,351 + GFF2579 0.81 +0.2
260,351 + GFF2579 0.81 +0.3
260,351 + GFF2579 0.81 +0.5
260,352 - GFF2579 0.82 +1.2
260,352 - GFF2579 0.82 +0.4
260,370 + GFF2579 0.83 -0.1
260,370 + GFF2579 0.83 -0.5
260,370 + GFF2579 0.83 +0.2
260,370 + GFF2579 0.83 -1.2
260,371 - GFF2579 0.83 -0.5
260,371 - GFF2579 0.83 -0.3
260,371 - GFF2579 0.83 +0.9
260,372 + GFF2579 0.83 +0.0
260,372 + GFF2579 0.83 +0.0
260,372 + GFF2579 0.83 -0.5
260,423 + GFF2579 0.86 -1.3
260,423 + GFF2579 0.86 +0.1
260,423 + GFF2579 0.86 -1.2
260,424 - GFF2579 0.86 -0.8
260,540 + +0.4
260,540 + -0.6
260,540 + -0.0
260,541 - -0.5
260,541 - +0.1
260,541 - -1.0
260,822 + -0.2
260,822 + +0.7
260,823 - -0.6
260,828 + +0.4
260,828 + -0.7
260,828 + +0.5
260,828 + +0.5
260,828 + -0.4
260,828 + +0.5
260,829 - +0.3
260,829 - -0.1
260,978 + GFF2580 0.21 +1.4
260,979 - GFF2580 0.21 +0.3
260,979 - GFF2580 0.21 -0.5
260,979 - GFF2580 0.21 -0.7
260,979 - GFF2580 0.21 -0.6
260,982 - GFF2580 0.21 -0.8
260,982 - GFF2580 0.21 +0.3
260,982 - GFF2580 0.21 -0.1
260,982 - GFF2580 0.21 -0.0
261,272 + GFF2580 0.42 -0.3
261,272 + GFF2580 0.42 +0.3
261,273 - GFF2580 0.42 -0.2
261,273 - GFF2580 0.42 -0.2
261,419 + GFF2580 0.53 +0.0
261,481 + GFF2580 0.57 +0.3
261,481 + GFF2580 0.57 +0.8
261,481 + GFF2580 0.57 +0.4
261,491 + GFF2580 0.58 -0.4
261,491 + GFF2580 0.58 +0.3
261,773 + GFF2580 0.79 -0.2
261,773 + GFF2580 0.79 -0.5
261,774 - GFF2580 0.79 -0.4
261,774 - GFF2580 0.79 -0.5
261,774 - GFF2580 0.79 -0.8
261,774 - GFF2580 0.79 -0.1
261,774 - GFF2580 0.79 -0.1
261,774 - GFF2580 0.79 +1.7
261,774 - GFF2580 0.79 +0.4
261,872 + GFF2580 0.86 -0.5
261,873 - GFF2580 0.86 +0.0
261,987 + -0.4
261,987 + +0.3
261,987 + +0.2
261,987 + -0.3
261,987 + +0.0
261,988 - -0.3
261,988 - +0.1
261,988 - -1.6
262,258 + -0.3
262,739 + GFF2581 0.55 -0.0
262,739 + GFF2581 0.55 +0.0
262,739 + GFF2581 0.55 -0.7
262,740 - GFF2581 0.55 -1.1
262,740 - GFF2581 0.55 +1.0
262,740 - GFF2581 0.55 -0.6
262,775 + GFF2581 0.60 -1.3
262,775 + GFF2581 0.60 +0.6
262,776 - GFF2581 0.60 +0.2
262,776 - GFF2581 0.60 -0.5
262,776 - GFF2581 0.60 -0.2
262,776 - GFF2581 0.60 +0.2
262,841 + GFF2581 0.70 +0.1
263,056 + +0.4
263,056 + +0.4
263,056 + -0.2

Or see this region's nucleotide sequence