Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2576 and GFF2577 overlap by 4 nucleotides GFF2577 and GFF2578 overlap by 4 nucleotides GFF2578 and GFF2579 are separated by 178 nucleotides
GFF2576 - C4-dicarboxylate TRAP transporter large permease protein DctM, at 255,971 to 257,323
GFF2576
GFF2577 - hypothetical protein, at 257,320 to 257,880
GFF2577
GFF2578 - Solute-binding protein, at 257,877 to 258,926
GFF2578
GFF2579 - Long-chain-fatty-acid--CoA ligase, at 259,105 to 260,634
GFF2579
Position (kb) 257
258
259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 257.074 kb on - strand, within GFF2576 at 257.074 kb on - strand, within GFF2576 at 257.074 kb on - strand, within GFF2576 at 257.166 kb on + strand, within GFF2576 at 257.166 kb on + strand, within GFF2576 at 257.167 kb on - strand, within GFF2576 at 257.167 kb on - strand, within GFF2576 at 257.186 kb on - strand, within GFF2576 at 257.295 kb on + strand at 257.295 kb on + strand at 257.365 kb on + strand at 257.401 kb on + strand, within GFF2577 at 257.401 kb on + strand, within GFF2577 at 257.401 kb on + strand, within GFF2577 at 257.402 kb on - strand, within GFF2577 at 257.402 kb on - strand, within GFF2577 at 257.402 kb on - strand, within GFF2577 at 257.678 kb on + strand, within GFF2577 at 257.678 kb on + strand, within GFF2577 at 257.679 kb on - strand, within GFF2577 at 257.679 kb on - strand, within GFF2577 at 257.679 kb on - strand, within GFF2577 at 257.679 kb on - strand, within GFF2577 at 257.679 kb on - strand, within GFF2577 at 257.679 kb on - strand, within GFF2577 at 257.679 kb on - strand, within GFF2577 at 257.679 kb on - strand, within GFF2577 at 257.717 kb on + strand, within GFF2577 at 257.718 kb on - strand, within GFF2577 at 257.718 kb on - strand, within GFF2577 at 257.718 kb on - strand, within GFF2577 at 257.740 kb on + strand, within GFF2577 at 257.740 kb on + strand, within GFF2577 at 257.791 kb on + strand, within GFF2577 at 257.791 kb on + strand, within GFF2577 at 257.792 kb on - strand, within GFF2577 at 257.938 kb on + strand at 258.047 kb on + strand, within GFF2578 at 258.048 kb on - strand, within GFF2578 at 258.181 kb on + strand, within GFF2578 at 258.181 kb on + strand, within GFF2578 at 258.181 kb on + strand, within GFF2578 at 258.182 kb on - strand, within GFF2578 at 258.182 kb on - strand, within GFF2578 at 258.182 kb on - strand, within GFF2578 at 258.182 kb on - strand, within GFF2578 at 258.182 kb on - strand, within GFF2578 at 258.295 kb on + strand, within GFF2578 at 258.295 kb on + strand, within GFF2578 at 258.295 kb on + strand, within GFF2578 at 258.295 kb on + strand, within GFF2578 at 258.295 kb on + strand, within GFF2578 at 258.296 kb on - strand, within GFF2578 at 258.296 kb on - strand, within GFF2578 at 258.296 kb on - strand, within GFF2578 at 258.296 kb on - strand, within GFF2578 at 258.484 kb on + strand, within GFF2578 at 258.485 kb on - strand, within GFF2578 at 258.485 kb on - strand, within GFF2578 at 258.538 kb on + strand, within GFF2578 at 258.538 kb on + strand, within GFF2578 at 258.538 kb on + strand, within GFF2578 at 258.539 kb on - strand, within GFF2578 at 258.539 kb on - strand, within GFF2578 at 258.539 kb on - strand, within GFF2578 at 258.569 kb on + strand, within GFF2578 at 258.569 kb on + strand, within GFF2578 at 258.569 kb on + strand, within GFF2578 at 258.569 kb on + strand, within GFF2578 at 258.569 kb on + strand, within GFF2578 at 258.569 kb on + strand, within GFF2578 at 258.570 kb on - strand, within GFF2578 at 258.570 kb on - strand, within GFF2578 at 258.570 kb on - strand, within GFF2578 at 258.570 kb on - strand, within GFF2578 at 258.598 kb on + strand, within GFF2578 at 258.598 kb on + strand, within GFF2578 at 258.599 kb on - strand, within GFF2578 at 258.610 kb on + strand, within GFF2578 at 258.611 kb on - strand, within GFF2578 at 258.685 kb on + strand, within GFF2578 at 258.685 kb on + strand, within GFF2578 at 258.685 kb on + strand, within GFF2578 at 258.686 kb on - strand, within GFF2578 at 258.686 kb on - strand, within GFF2578 at 258.686 kb on - strand, within GFF2578 at 258.686 kb on - strand, within GFF2578 at 259.026 kb on + strand at 259.026 kb on + strand at 259.026 kb on + strand at 259.026 kb on + strand at 259.026 kb on + strand at 259.027 kb on - strand at 259.027 kb on - strand at 259.027 kb on - strand at 259.116 kb on + strand at 259.117 kb on - strand at 259.121 kb on + strand at 259.133 kb on + strand at 259.134 kb on - strand at 259.397 kb on + strand, within GFF2579 at 259.398 kb on - strand, within GFF2579 at 259.454 kb on + strand, within GFF2579 at 259.541 kb on + strand, within GFF2579 at 259.541 kb on + strand, within GFF2579 at 259.541 kb on + strand, within GFF2579 at 259.630 kb on + strand, within GFF2579 at 259.630 kb on + strand, within GFF2579 at 259.631 kb on - strand, within GFF2579 at 259.652 kb on + strand, within GFF2579 at 259.653 kb on - strand, within GFF2579 at 259.685 kb on + strand, within GFF2579 at 259.685 kb on + strand, within GFF2579 at 259.702 kb on - strand, within GFF2579 at 259.865 kb on + strand, within GFF2579 at 259.866 kb on - strand, within GFF2579
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 257,074 - GFF2576 0.82 +0.2 257,074 - GFF2576 0.82 +1.0 257,074 - GFF2576 0.82 +0.3 257,166 + GFF2576 0.88 -0.2 257,166 + GFF2576 0.88 -1.1 257,167 - GFF2576 0.88 +0.7 257,167 - GFF2576 0.88 +0.7 257,186 - GFF2576 0.90 +0.1 257,295 + -0.1 257,295 + +0.1 257,365 + -1.2 257,401 + GFF2577 0.14 -1.0 257,401 + GFF2577 0.14 +0.6 257,401 + GFF2577 0.14 -1.0 257,402 - GFF2577 0.15 +0.1 257,402 - GFF2577 0.15 -0.2 257,402 - GFF2577 0.15 -1.8 257,678 + GFF2577 0.64 -0.6 257,678 + GFF2577 0.64 -0.6 257,679 - GFF2577 0.64 +0.4 257,679 - GFF2577 0.64 +0.2 257,679 - GFF2577 0.64 +1.5 257,679 - GFF2577 0.64 +0.2 257,679 - GFF2577 0.64 +0.4 257,679 - GFF2577 0.64 -0.1 257,679 - GFF2577 0.64 +0.2 257,679 - GFF2577 0.64 -0.0 257,717 + GFF2577 0.71 -0.4 257,718 - GFF2577 0.71 -0.9 257,718 - GFF2577 0.71 -0.0 257,718 - GFF2577 0.71 -0.5 257,740 + GFF2577 0.75 +0.1 257,740 + GFF2577 0.75 +1.7 257,791 + GFF2577 0.84 +0.1 257,791 + GFF2577 0.84 +0.4 257,792 - GFF2577 0.84 -0.3 257,938 + -0.5 258,047 + GFF2578 0.16 +0.4 258,048 - GFF2578 0.16 -0.3 258,181 + GFF2578 0.29 +0.7 258,181 + GFF2578 0.29 -0.2 258,181 + GFF2578 0.29 -0.0 258,182 - GFF2578 0.29 -0.2 258,182 - GFF2578 0.29 -0.5 258,182 - GFF2578 0.29 +1.3 258,182 - GFF2578 0.29 +0.5 258,182 - GFF2578 0.29 +0.3 258,295 + GFF2578 0.40 +0.1 258,295 + GFF2578 0.40 -0.1 258,295 + GFF2578 0.40 +0.6 258,295 + GFF2578 0.40 +0.1 258,295 + GFF2578 0.40 +1.2 258,296 - GFF2578 0.40 +0.0 258,296 - GFF2578 0.40 -0.8 258,296 - GFF2578 0.40 -0.5 258,296 - GFF2578 0.40 -0.7 258,484 + GFF2578 0.58 -0.3 258,485 - GFF2578 0.58 +0.1 258,485 - GFF2578 0.58 +0.8 258,538 + GFF2578 0.63 +0.2 258,538 + GFF2578 0.63 +0.0 258,538 + GFF2578 0.63 -0.9 258,539 - GFF2578 0.63 -1.1 258,539 - GFF2578 0.63 -0.1 258,539 - GFF2578 0.63 -0.2 258,569 + GFF2578 0.66 +0.8 258,569 + GFF2578 0.66 +1.2 258,569 + GFF2578 0.66 -0.0 258,569 + GFF2578 0.66 +0.0 258,569 + GFF2578 0.66 +0.3 258,569 + GFF2578 0.66 +0.5 258,570 - GFF2578 0.66 +0.2 258,570 - GFF2578 0.66 +0.7 258,570 - GFF2578 0.66 +1.2 258,570 - GFF2578 0.66 -0.6 258,598 + GFF2578 0.69 -0.4 258,598 + GFF2578 0.69 -0.2 258,599 - GFF2578 0.69 +0.4 258,610 + GFF2578 0.70 -0.7 258,611 - GFF2578 0.70 -0.3 258,685 + GFF2578 0.77 +0.3 258,685 + GFF2578 0.77 -0.2 258,685 + GFF2578 0.77 -0.4 258,686 - GFF2578 0.77 -0.1 258,686 - GFF2578 0.77 -0.9 258,686 - GFF2578 0.77 -0.0 258,686 - GFF2578 0.77 +0.4 259,026 + -0.1 259,026 + -0.6 259,026 + +0.3 259,026 + +1.2 259,026 + +0.9 259,027 - -0.0 259,027 - -0.3 259,027 - +1.9 259,116 + +0.5 259,117 - +1.0 259,121 + +0.2 259,133 + +0.8 259,134 - -0.2 259,397 + GFF2579 0.19 +0.7 259,398 - GFF2579 0.19 +0.2 259,454 + GFF2579 0.23 +0.2 259,541 + GFF2579 0.28 -0.3 259,541 + GFF2579 0.28 -0.7 259,541 + GFF2579 0.28 -0.7 259,630 + GFF2579 0.34 +0.2 259,630 + GFF2579 0.34 -0.2 259,631 - GFF2579 0.34 -0.9 259,652 + GFF2579 0.36 +0.6 259,653 - GFF2579 0.36 -1.5 259,685 + GFF2579 0.38 +0.2 259,685 + GFF2579 0.38 -0.4 259,702 - GFF2579 0.39 +0.1 259,865 + GFF2579 0.50 +0.9 259,866 - GFF2579 0.50 +0.7
Or see this region's nucleotide sequence