Strain Fitness in Xanthobacter sp. DMC5 around GFF2575

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2574 and GFF2575 are separated by 88 nucleotidesGFF2575 and GFF2576 are separated by 7 nucleotides GFF2574 - putative protein, at 252,480 to 254,987 GFF2574 GFF2575 - putative protein, at 255,076 to 255,963 GFF2575 GFF2576 - C4-dicarboxylate TRAP transporter large permease protein DctM, at 255,971 to 257,323 GFF2576 Position (kb) 255 256Strain fitness (log2 ratio) -2 -1 0 1at 254.088 kb on + strand, within GFF2574at 254.088 kb on + strand, within GFF2574at 254.088 kb on + strand, within GFF2574at 254.089 kb on - strand, within GFF2574at 254.254 kb on - strand, within GFF2574at 254.561 kb on + strand, within GFF2574at 254.664 kb on + strand, within GFF2574at 254.664 kb on + strand, within GFF2574at 254.664 kb on + strand, within GFF2574at 254.664 kb on + strand, within GFF2574at 254.664 kb on + strand, within GFF2574at 254.664 kb on + strand, within GFF2574at 254.665 kb on - strand, within GFF2574at 254.665 kb on - strand, within GFF2574at 254.665 kb on - strand, within GFF2574at 254.665 kb on - strand, within GFF2574at 254.665 kb on - strand, within GFF2574at 254.896 kb on - strandat 254.937 kb on + strandat 254.937 kb on + strandat 254.937 kb on + strandat 254.937 kb on + strandat 254.938 kb on - strandat 254.938 kb on - strandat 254.938 kb on - strandat 254.938 kb on - strandat 255.083 kb on - strandat 255.083 kb on - strandat 255.088 kb on - strandat 255.088 kb on - strandat 255.088 kb on - strandat 255.106 kb on + strandat 255.106 kb on + strandat 255.106 kb on + strandat 255.106 kb on + strandat 255.106 kb on + strandat 255.106 kb on + strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.112 kb on + strandat 255.112 kb on + strandat 255.112 kb on + strandat 255.112 kb on + strandat 255.113 kb on - strandat 255.113 kb on - strandat 255.113 kb on - strandat 255.562 kb on + strand, within GFF2575at 255.626 kb on + strand, within GFF2575at 255.627 kb on - strand, within GFF2575at 255.627 kb on - strand, within GFF2575at 255.688 kb on + strand, within GFF2575at 255.689 kb on - strand, within GFF2575at 255.689 kb on - strand, within GFF2575at 255.868 kb on + strand, within GFF2575at 255.962 kb on - strandat 255.962 kb on - strandat 256.167 kb on + strand, within GFF2576at 256.383 kb on + strand, within GFF2576at 256.384 kb on - strand, within GFF2576at 256.384 kb on - strand, within GFF2576at 256.390 kb on + strand, within GFF2576at 256.391 kb on - strand, within GFF2576at 256.395 kb on + strand, within GFF2576at 256.395 kb on + strand, within GFF2576at 256.395 kb on + strand, within GFF2576at 256.395 kb on + strand, within GFF2576at 256.395 kb on + strand, within GFF2576at 256.396 kb on - strand, within GFF2576at 256.396 kb on - strand, within GFF2576at 256.396 kb on - strand, within GFF2576at 256.396 kb on - strand, within GFF2576at 256.402 kb on - strand, within GFF2576at 256.497 kb on + strand, within GFF2576at 256.563 kb on + strand, within GFF2576at 256.573 kb on - strand, within GFF2576at 256.573 kb on - strand, within GFF2576at 256.698 kb on + strand, within GFF2576at 256.698 kb on + strand, within GFF2576at 256.698 kb on + strand, within GFF2576at 256.699 kb on - strand, within GFF2576at 256.719 kb on + strand, within GFF2576at 256.719 kb on + strand, within GFF2576at 256.719 kb on + strand, within GFF2576at 256.720 kb on - strand, within GFF2576at 256.720 kb on - strand, within GFF2576at 256.720 kb on - strand, within GFF2576at 256.747 kb on - strand, within GFF2576at 256.833 kb on + strand, within GFF2576at 256.833 kb on + strand, within GFF2576at 256.833 kb on + strand, within GFF2576at 256.833 kb on + strand, within GFF2576at 256.833 kb on + strand, within GFF2576at 256.834 kb on - strand, within GFF2576

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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254,088 + GFF2574 0.64 +1.5
254,088 + GFF2574 0.64 -0.1
254,088 + GFF2574 0.64 +0.2
254,089 - GFF2574 0.64 -0.4
254,254 - GFF2574 0.71 -0.3
254,561 + GFF2574 0.83 -0.1
254,664 + GFF2574 0.87 -1.2
254,664 + GFF2574 0.87 -1.1
254,664 + GFF2574 0.87 +0.3
254,664 + GFF2574 0.87 +0.1
254,664 + GFF2574 0.87 +1.1
254,664 + GFF2574 0.87 -1.4
254,665 - GFF2574 0.87 +0.5
254,665 - GFF2574 0.87 -0.5
254,665 - GFF2574 0.87 -0.2
254,665 - GFF2574 0.87 -0.3
254,665 - GFF2574 0.87 -0.6
254,896 - -0.0
254,937 + +0.5
254,937 + +0.2
254,937 + +1.0
254,937 + -0.2
254,938 - +0.4
254,938 - -0.7
254,938 - -0.8
254,938 - +0.2
255,083 - +0.7
255,083 - +0.7
255,088 - -0.1
255,088 - -0.8
255,088 - -0.1
255,106 + +1.2
255,106 + -0.3
255,106 + -0.8
255,106 + +0.2
255,106 + +0.1
255,106 + -0.0
255,107 - -1.1
255,107 - -0.8
255,107 - -0.2
255,107 - +0.5
255,107 - +0.0
255,107 - +0.2
255,107 - +0.9
255,107 - -0.0
255,107 - -0.5
255,107 - +1.2
255,107 - -0.1
255,107 - +1.2
255,107 - +0.9
255,112 + +0.2
255,112 + +0.2
255,112 + -0.3
255,112 + -0.3
255,113 - +0.5
255,113 - +0.1
255,113 - -0.2
255,562 + GFF2575 0.55 +0.4
255,626 + GFF2575 0.62 +0.1
255,627 - GFF2575 0.62 -1.2
255,627 - GFF2575 0.62 -0.0
255,688 + GFF2575 0.69 +1.1
255,689 - GFF2575 0.69 +0.2
255,689 - GFF2575 0.69 -0.4
255,868 + GFF2575 0.89 +0.2
255,962 - +0.2
255,962 - -0.4
256,167 + GFF2576 0.14 -1.8
256,383 + GFF2576 0.30 +0.5
256,384 - GFF2576 0.31 +0.8
256,384 - GFF2576 0.31 +0.4
256,390 + GFF2576 0.31 -0.5
256,391 - GFF2576 0.31 -0.7
256,395 + GFF2576 0.31 -0.5
256,395 + GFF2576 0.31 -0.5
256,395 + GFF2576 0.31 -0.4
256,395 + GFF2576 0.31 +0.4
256,395 + GFF2576 0.31 +0.7
256,396 - GFF2576 0.31 -0.8
256,396 - GFF2576 0.31 +0.3
256,396 - GFF2576 0.31 -0.1
256,396 - GFF2576 0.31 -0.0
256,402 - GFF2576 0.32 +1.6
256,497 + GFF2576 0.39 +0.5
256,563 + GFF2576 0.44 +0.3
256,573 - GFF2576 0.44 -0.6
256,573 - GFF2576 0.44 +1.4
256,698 + GFF2576 0.54 +0.0
256,698 + GFF2576 0.54 -0.4
256,698 + GFF2576 0.54 +0.1
256,699 - GFF2576 0.54 -0.8
256,719 + GFF2576 0.55 -0.7
256,719 + GFF2576 0.55 +0.4
256,719 + GFF2576 0.55 +0.2
256,720 - GFF2576 0.55 -0.2
256,720 - GFF2576 0.55 -0.4
256,720 - GFF2576 0.55 +0.5
256,747 - GFF2576 0.57 -0.5
256,833 + GFF2576 0.64 +1.2
256,833 + GFF2576 0.64 +1.2
256,833 + GFF2576 0.64 +1.2
256,833 + GFF2576 0.64 -0.4
256,833 + GFF2576 0.64 -0.6
256,834 - GFF2576 0.64 -0.5

Or see this region's nucleotide sequence