Strain Fitness in Xanthobacter sp. DMC5 around GFF2572

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2571 and GFF2572 are separated by 27 nucleotidesGFF2572 and GFF2573 are separated by 218 nucleotides GFF2571 - Efflux pump periplasmic linker BepF, at 244,112 to 245,428 GFF2571 GFF2572 - Efflux pump membrane transporter BepE, at 245,456 to 248,665 GFF2572 GFF2573 - hypothetical protein, at 248,884 to 252,309 GFF2573 Position (kb) 245 246 247 248 249Strain fitness (log2 ratio) -3 -2 -1 0 1at 244.633 kb on + strand, within GFF2571at 244.634 kb on - strand, within GFF2571at 244.634 kb on - strand, within GFF2571at 244.705 kb on + strand, within GFF2571at 244.706 kb on - strand, within GFF2571at 244.913 kb on + strand, within GFF2571at 244.913 kb on + strand, within GFF2571at 244.913 kb on + strand, within GFF2571at 244.913 kb on + strand, within GFF2571at 244.913 kb on + strand, within GFF2571at 244.914 kb on - strand, within GFF2571at 244.914 kb on - strand, within GFF2571at 244.914 kb on - strand, within GFF2571at 245.072 kb on + strand, within GFF2571at 245.072 kb on + strand, within GFF2571at 245.072 kb on + strand, within GFF2571at 245.073 kb on - strand, within GFF2571at 245.090 kb on + strand, within GFF2571at 245.091 kb on - strand, within GFF2571at 245.091 kb on - strand, within GFF2571at 245.091 kb on - strand, within GFF2571at 245.514 kb on + strandat 245.687 kb on + strandat 245.687 kb on + strandat 245.688 kb on - strandat 245.688 kb on - strandat 245.688 kb on - strandat 245.688 kb on - strandat 245.720 kb on + strandat 245.720 kb on + strandat 245.720 kb on + strandat 245.720 kb on + strandat 245.721 kb on - strandat 245.721 kb on - strandat 245.721 kb on - strandat 245.721 kb on - strandat 245.721 kb on - strandat 245.903 kb on + strand, within GFF2572at 245.903 kb on + strand, within GFF2572at 245.927 kb on + strand, within GFF2572at 245.927 kb on + strand, within GFF2572at 245.927 kb on + strand, within GFF2572at 245.928 kb on - strand, within GFF2572at 245.928 kb on - strand, within GFF2572at 245.928 kb on - strand, within GFF2572at 245.928 kb on - strand, within GFF2572at 245.928 kb on - strand, within GFF2572at 245.938 kb on - strand, within GFF2572at 246.005 kb on + strand, within GFF2572at 246.005 kb on + strand, within GFF2572at 246.005 kb on + strand, within GFF2572at 246.005 kb on + strand, within GFF2572at 246.005 kb on + strand, within GFF2572at 246.005 kb on + strand, within GFF2572at 246.006 kb on - strand, within GFF2572at 246.006 kb on - strand, within GFF2572at 246.006 kb on - strand, within GFF2572at 246.006 kb on - strand, within GFF2572at 246.198 kb on - strand, within GFF2572at 246.290 kb on + strand, within GFF2572at 246.290 kb on + strand, within GFF2572at 246.290 kb on + strand, within GFF2572at 246.290 kb on + strand, within GFF2572at 246.291 kb on - strand, within GFF2572at 246.291 kb on - strand, within GFF2572at 246.291 kb on - strand, within GFF2572at 246.291 kb on - strand, within GFF2572at 246.291 kb on - strand, within GFF2572at 246.410 kb on + strand, within GFF2572at 246.434 kb on + strand, within GFF2572at 246.434 kb on + strand, within GFF2572at 246.434 kb on + strand, within GFF2572at 246.435 kb on - strand, within GFF2572at 246.435 kb on - strand, within GFF2572at 246.435 kb on - strand, within GFF2572at 246.451 kb on + strand, within GFF2572at 246.451 kb on + strand, within GFF2572at 246.451 kb on + strand, within GFF2572at 246.452 kb on - strand, within GFF2572at 246.486 kb on + strand, within GFF2572at 246.486 kb on + strand, within GFF2572at 246.487 kb on - strand, within GFF2572at 246.487 kb on - strand, within GFF2572at 246.992 kb on + strand, within GFF2572at 246.992 kb on + strand, within GFF2572at 246.992 kb on + strand, within GFF2572at 246.992 kb on + strand, within GFF2572at 246.992 kb on + strand, within GFF2572at 246.993 kb on - strand, within GFF2572at 246.993 kb on - strand, within GFF2572at 247.013 kb on + strand, within GFF2572at 247.013 kb on + strand, within GFF2572at 247.013 kb on + strand, within GFF2572at 247.014 kb on - strand, within GFF2572at 247.034 kb on + strand, within GFF2572at 247.034 kb on + strand, within GFF2572at 247.035 kb on - strand, within GFF2572at 247.035 kb on - strand, within GFF2572at 247.035 kb on - strand, within GFF2572at 247.167 kb on - strand, within GFF2572at 247.167 kb on - strand, within GFF2572at 247.167 kb on - strand, within GFF2572at 247.221 kb on - strand, within GFF2572at 247.340 kb on + strand, within GFF2572at 247.340 kb on + strand, within GFF2572at 247.340 kb on + strand, within GFF2572at 247.341 kb on - strand, within GFF2572at 247.341 kb on - strand, within GFF2572at 247.341 kb on - strand, within GFF2572at 247.341 kb on - strand, within GFF2572at 247.341 kb on - strand, within GFF2572at 247.341 kb on - strand, within GFF2572at 247.341 kb on - strand, within GFF2572at 247.341 kb on - strand, within GFF2572at 247.370 kb on + strand, within GFF2572at 247.371 kb on - strand, within GFF2572at 247.403 kb on + strand, within GFF2572at 247.403 kb on + strand, within GFF2572at 247.403 kb on + strand, within GFF2572at 247.403 kb on + strand, within GFF2572at 247.403 kb on + strand, within GFF2572at 247.403 kb on + strand, within GFF2572at 247.403 kb on + strand, within GFF2572at 247.403 kb on + strand, within GFF2572at 247.403 kb on + strand, within GFF2572at 247.404 kb on - strand, within GFF2572at 247.504 kb on + strand, within GFF2572at 247.504 kb on + strand, within GFF2572at 247.505 kb on - strand, within GFF2572at 247.505 kb on - strand, within GFF2572at 247.505 kb on - strand, within GFF2572at 247.505 kb on - strand, within GFF2572at 247.719 kb on - strand, within GFF2572at 247.733 kb on + strand, within GFF2572at 247.733 kb on + strand, within GFF2572at 247.733 kb on + strand, within GFF2572at 247.734 kb on - strand, within GFF2572at 247.775 kb on + strand, within GFF2572at 247.775 kb on + strand, within GFF2572at 247.775 kb on + strand, within GFF2572at 247.775 kb on + strand, within GFF2572at 247.775 kb on + strand, within GFF2572at 247.775 kb on + strand, within GFF2572at 247.776 kb on - strand, within GFF2572at 247.776 kb on - strand, within GFF2572at 247.776 kb on - strand, within GFF2572at 247.776 kb on - strand, within GFF2572at 247.777 kb on + strand, within GFF2572at 247.778 kb on - strand, within GFF2572at 247.919 kb on + strand, within GFF2572at 247.929 kb on - strand, within GFF2572at 248.057 kb on + strand, within GFF2572at 248.087 kb on + strand, within GFF2572at 248.087 kb on + strand, within GFF2572at 248.087 kb on + strand, within GFF2572at 248.088 kb on - strand, within GFF2572at 248.088 kb on - strand, within GFF2572at 248.088 kb on - strand, within GFF2572at 248.088 kb on - strand, within GFF2572at 248.091 kb on - strand, within GFF2572at 248.120 kb on + strand, within GFF2572at 248.120 kb on + strand, within GFF2572at 248.121 kb on - strand, within GFF2572at 248.121 kb on - strand, within GFF2572at 248.121 kb on - strand, within GFF2572at 248.141 kb on + strand, within GFF2572at 248.141 kb on + strand, within GFF2572at 248.142 kb on - strand, within GFF2572at 248.142 kb on - strand, within GFF2572at 248.243 kb on + strand, within GFF2572at 248.243 kb on + strand, within GFF2572at 248.244 kb on - strand, within GFF2572at 248.309 kb on + strand, within GFF2572at 248.309 kb on + strand, within GFF2572at 248.309 kb on + strand, within GFF2572at 248.309 kb on + strand, within GFF2572at 248.310 kb on - strand, within GFF2572at 248.310 kb on - strand, within GFF2572at 248.310 kb on - strand, within GFF2572at 248.540 kb on + strandat 248.540 kb on + strandat 248.540 kb on + strandat 248.540 kb on + strandat 248.540 kb on + strandat 248.541 kb on - strandat 248.541 kb on - strandat 248.541 kb on - strandat 248.846 kb on + strandat 248.846 kb on + strandat 248.882 kb on - strandat 248.920 kb on + strandat 248.921 kb on - strandat 248.926 kb on + strandat 248.926 kb on + strandat 248.926 kb on + strandat 248.926 kb on + strandat 248.926 kb on + strandat 248.927 kb on - strandat 248.927 kb on - strandat 248.927 kb on - strandat 248.927 kb on - strandat 248.927 kb on - strandat 248.927 kb on - strandat 249.176 kb on - strandat 249.199 kb on + strandat 249.271 kb on + strand, within GFF2573at 249.271 kb on + strand, within GFF2573at 249.272 kb on - strand, within GFF2573at 249.272 kb on - strand, within GFF2573at 249.272 kb on - strand, within GFF2573at 249.322 kb on + strand, within GFF2573at 249.322 kb on + strand, within GFF2573at 249.322 kb on + strand, within GFF2573at 249.322 kb on + strand, within GFF2573at 249.323 kb on - strand, within GFF2573at 249.355 kb on + strand, within GFF2573at 249.355 kb on + strand, within GFF2573at 249.355 kb on + strand, within GFF2573at 249.494 kb on - strand, within GFF2573at 249.494 kb on - strand, within GFF2573

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
244,633 + GFF2571 0.40 -0.1
244,634 - GFF2571 0.40 +0.4
244,634 - GFF2571 0.40 +0.7
244,705 + GFF2571 0.45 +0.0
244,706 - GFF2571 0.45 +0.3
244,913 + GFF2571 0.61 +0.4
244,913 + GFF2571 0.61 -0.3
244,913 + GFF2571 0.61 -0.0
244,913 + GFF2571 0.61 -0.7
244,913 + GFF2571 0.61 -1.4
244,914 - GFF2571 0.61 -0.1
244,914 - GFF2571 0.61 +0.3
244,914 - GFF2571 0.61 -0.2
245,072 + GFF2571 0.73 +0.2
245,072 + GFF2571 0.73 -1.1
245,072 + GFF2571 0.73 +1.1
245,073 - GFF2571 0.73 +0.1
245,090 + GFF2571 0.74 -0.6
245,091 - GFF2571 0.74 -0.4
245,091 - GFF2571 0.74 +1.0
245,091 - GFF2571 0.74 -0.1
245,514 + -0.3
245,687 + -1.0
245,687 + -0.2
245,688 - -0.8
245,688 - -0.5
245,688 - +0.7
245,688 - -0.5
245,720 + +0.5
245,720 + -0.1
245,720 + -0.2
245,720 + +0.1
245,721 - +0.3
245,721 - -0.3
245,721 - +0.7
245,721 - -0.1
245,721 - +0.3
245,903 + GFF2572 0.14 -1.4
245,903 + GFF2572 0.14 -0.4
245,927 + GFF2572 0.15 +0.3
245,927 + GFF2572 0.15 +0.3
245,927 + GFF2572 0.15 +0.2
245,928 - GFF2572 0.15 +0.0
245,928 - GFF2572 0.15 +0.2
245,928 - GFF2572 0.15 -1.1
245,928 - GFF2572 0.15 +0.2
245,928 - GFF2572 0.15 -0.7
245,938 - GFF2572 0.15 +1.1
246,005 + GFF2572 0.17 -0.7
246,005 + GFF2572 0.17 +0.2
246,005 + GFF2572 0.17 -0.5
246,005 + GFF2572 0.17 -0.6
246,005 + GFF2572 0.17 +0.7
246,005 + GFF2572 0.17 -0.6
246,006 - GFF2572 0.17 +1.2
246,006 - GFF2572 0.17 +0.0
246,006 - GFF2572 0.17 -0.7
246,006 - GFF2572 0.17 +0.2
246,198 - GFF2572 0.23 -0.3
246,290 + GFF2572 0.26 -0.8
246,290 + GFF2572 0.26 -1.2
246,290 + GFF2572 0.26 +0.0
246,290 + GFF2572 0.26 -0.8
246,291 - GFF2572 0.26 +1.3
246,291 - GFF2572 0.26 -0.8
246,291 - GFF2572 0.26 -0.1
246,291 - GFF2572 0.26 +0.6
246,291 - GFF2572 0.26 -0.9
246,410 + GFF2572 0.30 +0.1
246,434 + GFF2572 0.30 -0.8
246,434 + GFF2572 0.30 -0.8
246,434 + GFF2572 0.30 -0.1
246,435 - GFF2572 0.30 +0.4
246,435 - GFF2572 0.30 -0.1
246,435 - GFF2572 0.30 -0.5
246,451 + GFF2572 0.31 +0.2
246,451 + GFF2572 0.31 +0.3
246,451 + GFF2572 0.31 -0.1
246,452 - GFF2572 0.31 -0.4
246,486 + GFF2572 0.32 +0.3
246,486 + GFF2572 0.32 -0.2
246,487 - GFF2572 0.32 +0.0
246,487 - GFF2572 0.32 -2.8
246,992 + GFF2572 0.48 -0.8
246,992 + GFF2572 0.48 -0.2
246,992 + GFF2572 0.48 -0.7
246,992 + GFF2572 0.48 +0.7
246,992 + GFF2572 0.48 +0.1
246,993 - GFF2572 0.48 -0.2
246,993 - GFF2572 0.48 -1.3
247,013 + GFF2572 0.49 +0.6
247,013 + GFF2572 0.49 -0.1
247,013 + GFF2572 0.49 +0.2
247,014 - GFF2572 0.49 +0.1
247,034 + GFF2572 0.49 +0.5
247,034 + GFF2572 0.49 -0.0
247,035 - GFF2572 0.49 +0.3
247,035 - GFF2572 0.49 -0.1
247,035 - GFF2572 0.49 +0.1
247,167 - GFF2572 0.53 -0.5
247,167 - GFF2572 0.53 +0.0
247,167 - GFF2572 0.53 -0.0
247,221 - GFF2572 0.55 -0.4
247,340 + GFF2572 0.59 +0.3
247,340 + GFF2572 0.59 -0.6
247,340 + GFF2572 0.59 +0.6
247,341 - GFF2572 0.59 +0.7
247,341 - GFF2572 0.59 +0.3
247,341 - GFF2572 0.59 +0.4
247,341 - GFF2572 0.59 +1.6
247,341 - GFF2572 0.59 +0.4
247,341 - GFF2572 0.59 +0.2
247,341 - GFF2572 0.59 -0.1
247,341 - GFF2572 0.59 +0.2
247,370 + GFF2572 0.60 +1.6
247,371 - GFF2572 0.60 +0.2
247,403 + GFF2572 0.61 +0.4
247,403 + GFF2572 0.61 -0.5
247,403 + GFF2572 0.61 +0.5
247,403 + GFF2572 0.61 -0.6
247,403 + GFF2572 0.61 -0.3
247,403 + GFF2572 0.61 -0.5
247,403 + GFF2572 0.61 +0.2
247,403 + GFF2572 0.61 -1.3
247,403 + GFF2572 0.61 -0.4
247,404 - GFF2572 0.61 +0.2
247,504 + GFF2572 0.64 +0.7
247,504 + GFF2572 0.64 +0.7
247,505 - GFF2572 0.64 +0.2
247,505 - GFF2572 0.64 -0.1
247,505 - GFF2572 0.64 -0.2
247,505 - GFF2572 0.64 +0.7
247,719 - GFF2572 0.70 +0.6
247,733 + GFF2572 0.71 -0.2
247,733 + GFF2572 0.71 +0.3
247,733 + GFF2572 0.71 +0.8
247,734 - GFF2572 0.71 +0.4
247,775 + GFF2572 0.72 -0.5
247,775 + GFF2572 0.72 -0.2
247,775 + GFF2572 0.72 +1.5
247,775 + GFF2572 0.72 -0.6
247,775 + GFF2572 0.72 +0.0
247,775 + GFF2572 0.72 -0.3
247,776 - GFF2572 0.72 -0.4
247,776 - GFF2572 0.72 +0.4
247,776 - GFF2572 0.72 +0.1
247,776 - GFF2572 0.72 -2.7
247,777 + GFF2572 0.72 +0.6
247,778 - GFF2572 0.72 +0.7
247,919 + GFF2572 0.77 +0.5
247,929 - GFF2572 0.77 -0.1
248,057 + GFF2572 0.81 -0.5
248,087 + GFF2572 0.82 +0.2
248,087 + GFF2572 0.82 -0.5
248,087 + GFF2572 0.82 +0.0
248,088 - GFF2572 0.82 -0.2
248,088 - GFF2572 0.82 +0.2
248,088 - GFF2572 0.82 -0.8
248,088 - GFF2572 0.82 -0.1
248,091 - GFF2572 0.82 -0.1
248,120 + GFF2572 0.83 -0.5
248,120 + GFF2572 0.83 -0.1
248,121 - GFF2572 0.83 -0.9
248,121 - GFF2572 0.83 +0.2
248,121 - GFF2572 0.83 +0.1
248,141 + GFF2572 0.84 +0.1
248,141 + GFF2572 0.84 -0.1
248,142 - GFF2572 0.84 +0.1
248,142 - GFF2572 0.84 -0.3
248,243 + GFF2572 0.87 +0.1
248,243 + GFF2572 0.87 +0.8
248,244 - GFF2572 0.87 -0.8
248,309 + GFF2572 0.89 +1.0
248,309 + GFF2572 0.89 +0.4
248,309 + GFF2572 0.89 -0.3
248,309 + GFF2572 0.89 +0.2
248,310 - GFF2572 0.89 -0.3
248,310 - GFF2572 0.89 +0.3
248,310 - GFF2572 0.89 -1.7
248,540 + -0.7
248,540 + +0.3
248,540 + -0.1
248,540 + -0.6
248,540 + -0.2
248,541 - +0.6
248,541 - -0.7
248,541 - -0.4
248,846 + -0.1
248,846 + +0.1
248,882 - -0.1
248,920 + -0.1
248,921 - +0.7
248,926 + +0.0
248,926 + +0.3
248,926 + -0.5
248,926 + -1.7
248,926 + +0.6
248,927 - +0.6
248,927 - +1.2
248,927 - +0.2
248,927 - +0.1
248,927 - +1.2
248,927 - +0.5
249,176 - +0.5
249,199 + -0.6
249,271 + GFF2573 0.11 +0.6
249,271 + GFF2573 0.11 +0.5
249,272 - GFF2573 0.11 +0.6
249,272 - GFF2573 0.11 +0.3
249,272 - GFF2573 0.11 +0.2
249,322 + GFF2573 0.13 +0.0
249,322 + GFF2573 0.13 -0.3
249,322 + GFF2573 0.13 +0.6
249,322 + GFF2573 0.13 -0.5
249,323 - GFF2573 0.13 +0.0
249,355 + GFF2573 0.14 +0.4
249,355 + GFF2573 0.14 +0.5
249,355 + GFF2573 0.14 +0.6
249,494 - GFF2573 0.18 +0.4
249,494 - GFF2573 0.18 +0.6

Or see this region's nucleotide sequence