Strain Fitness in Xanthobacter sp. DMC5 around GFF2562

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2560 and GFF2561 overlap by 4 nucleotidesGFF2561 and GFF2562 are separated by 13 nucleotidesGFF2562 and GFF2563 are separated by 3 nucleotidesGFF2563 and GFF2564 are separated by 10 nucleotidesGFF2564 and GFF2565 are separated by 97 nucleotides GFF2560 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, at 233,770 to 234,609 GFF2560 GFF2561 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase, at 234,606 to 235,367 GFF2561 GFF2562 - hypothetical protein, at 235,381 to 235,731 GFF2562 GFF2563 - hypothetical protein, at 235,735 to 236,058 GFF2563 GFF2564 - hypothetical protein, at 236,069 to 236,359 GFF2564 GFF2565 - hypothetical protein, at 236,457 to 236,663 GFF2565 Position (kb) 235 236Strain fitness (log2 ratio) -2 -1 0 1 2at 234.385 kb on + strand, within GFF2560at 234.385 kb on + strand, within GFF2560at 234.385 kb on + strand, within GFF2560at 234.385 kb on + strand, within GFF2560at 234.385 kb on + strand, within GFF2560at 234.385 kb on + strand, within GFF2560at 234.385 kb on + strand, within GFF2560at 234.385 kb on + strand, within GFF2560at 234.386 kb on - strand, within GFF2560at 234.386 kb on - strand, within GFF2560at 234.386 kb on - strand, within GFF2560at 234.386 kb on - strand, within GFF2560at 234.386 kb on - strand, within GFF2560at 234.386 kb on - strand, within GFF2560at 234.386 kb on - strand, within GFF2560at 234.386 kb on - strand, within GFF2560at 234.391 kb on + strand, within GFF2560at 234.529 kb on + strandat 234.530 kb on - strandat 234.530 kb on - strandat 234.530 kb on - strandat 234.530 kb on - strandat 234.530 kb on - strandat 234.530 kb on - strandat 234.530 kb on - strandat 234.561 kb on + strandat 234.562 kb on - strandat 234.562 kb on - strandat 234.562 kb on - strandat 234.570 kb on + strandat 234.570 kb on + strandat 234.571 kb on - strandat 234.571 kb on - strandat 234.571 kb on - strandat 234.957 kb on - strand, within GFF2561at 235.077 kb on + strand, within GFF2561at 235.078 kb on - strand, within GFF2561at 235.078 kb on - strand, within GFF2561at 235.173 kb on + strand, within GFF2561at 235.174 kb on - strand, within GFF2561at 235.174 kb on - strand, within GFF2561at 235.317 kb on + strandat 235.318 kb on - strandat 235.318 kb on - strandat 235.630 kb on + strand, within GFF2562at 235.630 kb on + strand, within GFF2562at 235.630 kb on + strand, within GFF2562at 235.631 kb on - strand, within GFF2562at 235.631 kb on - strand, within GFF2562at 235.631 kb on - strand, within GFF2562at 235.631 kb on - strand, within GFF2562at 235.631 kb on - strand, within GFF2562at 235.631 kb on - strand, within GFF2562at 235.631 kb on - strand, within GFF2562at 235.631 kb on - strand, within GFF2562at 235.631 kb on - strand, within GFF2562at 235.631 kb on - strand, within GFF2562at 236.079 kb on + strandat 236.080 kb on - strandat 236.085 kb on + strandat 236.085 kb on + strandat 236.085 kb on + strandat 236.085 kb on + strandat 236.085 kb on + strandat 236.086 kb on - strandat 236.086 kb on - strandat 236.086 kb on - strandat 236.086 kb on - strandat 236.091 kb on + strandat 236.091 kb on + strandat 236.091 kb on + strandat 236.091 kb on + strandat 236.095 kb on - strandat 236.251 kb on - strand, within GFF2564at 236.251 kb on - strand, within GFF2564at 236.316 kb on + strand, within GFF2564at 236.317 kb on - strand, within GFF2564at 236.317 kb on - strand, within GFF2564at 236.338 kb on + strandat 236.339 kb on - strandat 236.396 kb on + strandat 236.397 kb on - strandat 236.397 kb on - strandat 236.397 kb on - strandat 236.397 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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234,385 + GFF2560 0.73 -0.2
234,385 + GFF2560 0.73 +1.6
234,385 + GFF2560 0.73 +0.0
234,385 + GFF2560 0.73 -0.4
234,385 + GFF2560 0.73 -0.1
234,385 + GFF2560 0.73 +0.2
234,385 + GFF2560 0.73 -0.1
234,385 + GFF2560 0.73 -1.2
234,386 - GFF2560 0.73 -0.6
234,386 - GFF2560 0.73 -0.2
234,386 - GFF2560 0.73 +0.1
234,386 - GFF2560 0.73 -0.8
234,386 - GFF2560 0.73 -0.3
234,386 - GFF2560 0.73 +1.0
234,386 - GFF2560 0.73 -0.2
234,386 - GFF2560 0.73 +0.5
234,391 + GFF2560 0.74 +0.1
234,529 + +0.4
234,530 - -0.3
234,530 - +0.8
234,530 - -0.3
234,530 - -0.9
234,530 - -0.3
234,530 - +0.9
234,530 - -0.1
234,561 + -0.7
234,562 - -0.4
234,562 - -0.5
234,562 - +0.1
234,570 + -0.1
234,570 + -0.8
234,571 - -0.1
234,571 - -0.0
234,571 - +0.7
234,957 - GFF2561 0.46 +0.3
235,077 + GFF2561 0.62 -1.9
235,078 - GFF2561 0.62 +0.3
235,078 - GFF2561 0.62 +0.1
235,173 + GFF2561 0.74 +0.1
235,174 - GFF2561 0.75 +0.3
235,174 - GFF2561 0.75 +1.1
235,317 + -0.1
235,318 - -0.2
235,318 - -0.1
235,630 + GFF2562 0.71 -0.9
235,630 + GFF2562 0.71 -0.0
235,630 + GFF2562 0.71 -0.4
235,631 - GFF2562 0.71 -1.0
235,631 - GFF2562 0.71 -0.5
235,631 - GFF2562 0.71 -1.6
235,631 - GFF2562 0.71 -0.8
235,631 - GFF2562 0.71 +0.3
235,631 - GFF2562 0.71 +0.3
235,631 - GFF2562 0.71 +0.5
235,631 - GFF2562 0.71 +0.3
235,631 - GFF2562 0.71 +1.8
235,631 - GFF2562 0.71 -0.0
236,079 + +0.4
236,080 - -0.7
236,085 + -0.3
236,085 + +0.0
236,085 + -0.6
236,085 + -0.1
236,085 + -0.6
236,086 - -0.8
236,086 - -0.2
236,086 - +0.0
236,086 - +0.5
236,091 + +0.8
236,091 + -0.1
236,091 + +0.2
236,091 + +0.8
236,095 - -0.3
236,251 - GFF2564 0.63 -1.0
236,251 - GFF2564 0.63 +0.6
236,316 + GFF2564 0.85 +0.0
236,317 - GFF2564 0.85 -0.3
236,317 - GFF2564 0.85 +0.1
236,338 + -0.7
236,339 - +0.2
236,396 + -0.0
236,397 - -1.6
236,397 - +0.6
236,397 - -0.7
236,397 - -0.8

Or see this region's nucleotide sequence