Strain Fitness in Xanthobacter sp. DMC5 around GFF2553

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2551 and GFF2552 are separated by 134 nucleotidesGFF2552 and GFF2553 are separated by 82 nucleotidesGFF2553 and GFF2554 overlap by 4 nucleotides GFF2551 - Inner membrane ABC transporter permease protein YcjP, at 223,759 to 224,649 GFF2551 GFF2552 - hypothetical protein, at 224,784 to 225,287 GFF2552 GFF2553 - Mannitol 2-dehydrogenase, at 225,370 to 226,848 GFF2553 GFF2554 - Uronate isomerase, at 226,845 to 228,257 GFF2554 Position (kb) 225 226 227Strain fitness (log2 ratio) -2 -1 0 1at 224.453 kb on - strand, within GFF2551at 224.453 kb on - strand, within GFF2551at 224.533 kb on + strand, within GFF2551at 224.533 kb on + strand, within GFF2551at 224.534 kb on - strand, within GFF2551at 224.534 kb on - strand, within GFF2551at 224.534 kb on - strand, within GFF2551at 224.594 kb on - strandat 224.594 kb on - strandat 224.597 kb on - strandat 224.611 kb on + strandat 224.611 kb on + strandat 224.614 kb on + strandat 224.614 kb on + strandat 224.614 kb on + strandat 224.614 kb on + strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.693 kb on + strandat 224.693 kb on + strandat 224.693 kb on + strandat 224.694 kb on - strandat 224.694 kb on - strandat 224.694 kb on - strandat 224.694 kb on - strandat 224.694 kb on - strandat 224.778 kb on + strandat 224.779 kb on - strandat 224.844 kb on + strand, within GFF2552at 224.844 kb on + strand, within GFF2552at 224.844 kb on + strand, within GFF2552at 224.844 kb on + strand, within GFF2552at 224.844 kb on + strand, within GFF2552at 224.844 kb on + strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 225.285 kb on + strandat 225.286 kb on - strandat 225.286 kb on - strandat 225.286 kb on - strandat 225.286 kb on - strandat 225.286 kb on - strandat 225.304 kb on + strandat 225.304 kb on + strandat 225.305 kb on - strandat 225.305 kb on - strandat 225.305 kb on - strandat 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.578 kb on - strand, within GFF2553at 225.618 kb on - strand, within GFF2553at 225.618 kb on - strand, within GFF2553at 225.618 kb on - strand, within GFF2553at 225.794 kb on + strand, within GFF2553at 225.794 kb on + strand, within GFF2553at 225.795 kb on - strand, within GFF2553at 225.923 kb on + strand, within GFF2553at 225.932 kb on + strand, within GFF2553at 225.932 kb on + strand, within GFF2553at 225.932 kb on + strand, within GFF2553at 225.933 kb on - strand, within GFF2553at 225.933 kb on - strand, within GFF2553at 226.015 kb on + strand, within GFF2553at 226.448 kb on + strand, within GFF2553at 226.448 kb on + strand, within GFF2553at 226.448 kb on + strand, within GFF2553at 226.449 kb on - strand, within GFF2553at 226.449 kb on - strand, within GFF2553at 226.449 kb on - strand, within GFF2553at 226.449 kb on - strand, within GFF2553at 226.449 kb on - strand, within GFF2553at 226.449 kb on - strand, within GFF2553at 226.604 kb on + strand, within GFF2553at 226.604 kb on + strand, within GFF2553at 226.605 kb on - strand, within GFF2553at 226.709 kb on + strandat 226.710 kb on - strandat 226.710 kb on - strandat 226.784 kb on + strandat 226.784 kb on + strandat 226.784 kb on + strandat 226.785 kb on - strandat 226.785 kb on - strandat 226.855 kb on + strandat 226.855 kb on + strandat 226.855 kb on + strandat 226.856 kb on - strandat 226.856 kb on - strandat 226.876 kb on + strandat 226.900 kb on - strandat 227.035 kb on + strand, within GFF2554at 227.132 kb on - strand, within GFF2554at 227.164 kb on + strand, within GFF2554at 227.165 kb on - strand, within GFF2554at 227.165 kb on - strand, within GFF2554at 227.165 kb on - strand, within GFF2554at 227.165 kb on - strand, within GFF2554at 227.165 kb on - strand, within GFF2554at 227.165 kb on - strand, within GFF2554at 227.165 kb on - strand, within GFF2554at 227.251 kb on + strand, within GFF2554at 227.251 kb on + strand, within GFF2554at 227.251 kb on + strand, within GFF2554at 227.251 kb on + strand, within GFF2554at 227.252 kb on - strand, within GFF2554at 227.252 kb on - strand, within GFF2554at 227.252 kb on - strand, within GFF2554at 227.486 kb on - strand, within GFF2554at 227.542 kb on + strand, within GFF2554at 227.575 kb on + strand, within GFF2554at 227.678 kb on - strand, within GFF2554at 227.842 kb on + strand, within GFF2554at 227.842 kb on + strand, within GFF2554at 227.843 kb on - strand, within GFF2554at 227.843 kb on - strand, within GFF2554at 227.843 kb on - strand, within GFF2554

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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224,453 - GFF2551 0.78 -0.3
224,453 - GFF2551 0.78 -0.8
224,533 + GFF2551 0.87 +0.4
224,533 + GFF2551 0.87 -0.7
224,534 - GFF2551 0.87 -0.0
224,534 - GFF2551 0.87 -0.0
224,534 - GFF2551 0.87 -0.4
224,594 - +0.2
224,594 - -0.5
224,597 - +0.1
224,611 + +0.7
224,611 + -0.4
224,614 + -1.0
224,614 + -0.3
224,614 + -0.5
224,614 + -0.1
224,615 - +0.4
224,615 - +0.8
224,615 - -0.4
224,615 - -0.3
224,615 - +0.6
224,615 - +0.7
224,615 - -0.0
224,615 - -0.4
224,615 - +0.5
224,693 + -0.3
224,693 + -0.4
224,693 + -0.3
224,694 - +0.3
224,694 - -0.1
224,694 - -0.5
224,694 - +0.1
224,694 - +0.0
224,778 + +0.4
224,779 - -0.5
224,844 + GFF2552 0.12 +0.1
224,844 + GFF2552 0.12 +1.4
224,844 + GFF2552 0.12 -1.2
224,844 + GFF2552 0.12 +0.2
224,844 + GFF2552 0.12 +0.5
224,844 + GFF2552 0.12 +0.6
224,845 - GFF2552 0.12 +0.9
224,845 - GFF2552 0.12 +1.3
224,845 - GFF2552 0.12 +0.8
224,845 - GFF2552 0.12 +0.1
224,845 - GFF2552 0.12 -0.5
224,845 - GFF2552 0.12 -0.2
224,845 - GFF2552 0.12 +1.1
225,285 + +0.1
225,286 - -0.2
225,286 - +0.2
225,286 - -0.2
225,286 - -1.0
225,286 - +0.1
225,304 + +1.6
225,304 + +0.3
225,305 - -0.1
225,305 - -0.8
225,305 - +0.1
225,577 + GFF2553 0.14 -0.0
225,577 + GFF2553 0.14 -0.2
225,577 + GFF2553 0.14 +0.3
225,577 + GFF2553 0.14 +1.3
225,577 + GFF2553 0.14 +0.1
225,577 + GFF2553 0.14 +0.1
225,577 + GFF2553 0.14 -0.4
225,578 - GFF2553 0.14 +0.4
225,618 - GFF2553 0.17 +0.6
225,618 - GFF2553 0.17 -0.1
225,618 - GFF2553 0.17 -0.2
225,794 + GFF2553 0.29 -0.3
225,794 + GFF2553 0.29 +0.7
225,795 - GFF2553 0.29 +0.2
225,923 + GFF2553 0.37 -1.0
225,932 + GFF2553 0.38 -1.7
225,932 + GFF2553 0.38 -0.9
225,932 + GFF2553 0.38 +0.7
225,933 - GFF2553 0.38 -0.4
225,933 - GFF2553 0.38 +0.1
226,015 + GFF2553 0.44 +0.4
226,448 + GFF2553 0.73 +0.0
226,448 + GFF2553 0.73 -0.3
226,448 + GFF2553 0.73 +0.1
226,449 - GFF2553 0.73 -1.1
226,449 - GFF2553 0.73 +0.1
226,449 - GFF2553 0.73 +0.8
226,449 - GFF2553 0.73 -0.4
226,449 - GFF2553 0.73 -0.4
226,449 - GFF2553 0.73 -0.6
226,604 + GFF2553 0.83 +0.5
226,604 + GFF2553 0.83 -0.6
226,605 - GFF2553 0.84 +0.5
226,709 + -0.2
226,710 - +0.2
226,710 - -0.0
226,784 + +1.3
226,784 + -0.7
226,784 + -0.9
226,785 - +1.0
226,785 - -0.0
226,855 + -1.0
226,855 + -2.3
226,855 + +0.4
226,856 - -0.8
226,856 - +0.5
226,876 + +0.5
226,900 - +0.8
227,035 + GFF2554 0.13 -0.7
227,132 - GFF2554 0.20 +0.4
227,164 + GFF2554 0.23 -1.0
227,165 - GFF2554 0.23 -0.4
227,165 - GFF2554 0.23 -1.3
227,165 - GFF2554 0.23 +1.0
227,165 - GFF2554 0.23 +0.4
227,165 - GFF2554 0.23 -0.2
227,165 - GFF2554 0.23 -0.1
227,165 - GFF2554 0.23 -0.1
227,251 + GFF2554 0.29 -0.2
227,251 + GFF2554 0.29 -0.1
227,251 + GFF2554 0.29 +0.1
227,251 + GFF2554 0.29 -0.7
227,252 - GFF2554 0.29 -1.5
227,252 - GFF2554 0.29 -0.1
227,252 - GFF2554 0.29 -0.2
227,486 - GFF2554 0.45 -1.1
227,542 + GFF2554 0.49 +0.0
227,575 + GFF2554 0.52 +0.3
227,678 - GFF2554 0.59 -0.6
227,842 + GFF2554 0.71 +1.3
227,842 + GFF2554 0.71 -1.1
227,843 - GFF2554 0.71 -0.3
227,843 - GFF2554 0.71 +0.5
227,843 - GFF2554 0.71 -0.4

Or see this region's nucleotide sequence