Strain Fitness in Xanthobacter sp. DMC5 around GFF2543

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2542 and GFF2543 are separated by 120 nucleotidesGFF2543 and GFF2544 are separated by 468 nucleotides GFF2542 - Pyruvate, phosphate dikinase, at 212,140 to 214,797 GFF2542 GFF2543 - hypothetical protein, at 214,918 to 215,058 GFF2543 GFF2544 - hypothetical protein, at 215,527 to 216,246 GFF2544 Position (kb) 214 215 216Strain fitness (log2 ratio) -1 0 1at 214.843 kb on - strandat 214.958 kb on + strand, within GFF2543at 214.958 kb on + strand, within GFF2543at 214.958 kb on + strand, within GFF2543at 214.958 kb on + strand, within GFF2543at 214.958 kb on + strand, within GFF2543at 214.958 kb on + strand, within GFF2543at 214.959 kb on - strand, within GFF2543at 215.221 kb on + strandat 215.221 kb on + strandat 215.222 kb on - strandat 215.687 kb on - strand, within GFF2544at 215.746 kb on + strand, within GFF2544at 215.776 kb on + strand, within GFF2544at 215.776 kb on + strand, within GFF2544at 215.777 kb on - strand, within GFF2544at 215.777 kb on - strand, within GFF2544at 215.777 kb on - strand, within GFF2544at 215.890 kb on + strand, within GFF2544at 215.890 kb on + strand, within GFF2544at 215.891 kb on - strand, within GFF2544at 215.891 kb on - strand, within GFF2544at 215.990 kb on + strand, within GFF2544at 215.990 kb on + strand, within GFF2544at 216.031 kb on + strand, within GFF2544at 216.032 kb on - strand, within GFF2544

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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214,843 - -0.0
214,958 + GFF2543 0.28 -1.1
214,958 + GFF2543 0.28 -0.7
214,958 + GFF2543 0.28 -0.2
214,958 + GFF2543 0.28 -1.4
214,958 + GFF2543 0.28 -0.6
214,958 + GFF2543 0.28 -0.1
214,959 - GFF2543 0.29 -0.5
215,221 + -0.1
215,221 + -0.6
215,222 - -0.2
215,687 - GFF2544 0.22 -1.4
215,746 + GFF2544 0.30 -0.6
215,776 + GFF2544 0.35 +1.4
215,776 + GFF2544 0.35 -0.6
215,777 - GFF2544 0.35 +0.1
215,777 - GFF2544 0.35 +0.6
215,777 - GFF2544 0.35 -0.4
215,890 + GFF2544 0.50 +0.5
215,890 + GFF2544 0.50 +0.7
215,891 - GFF2544 0.51 -0.0
215,891 - GFF2544 0.51 -0.7
215,990 + GFF2544 0.64 -0.1
215,990 + GFF2544 0.64 +0.7
216,031 + GFF2544 0.70 -0.2
216,032 - GFF2544 0.70 -0.3

Or see this region's nucleotide sequence