Strain Fitness in Xanthobacter sp. DMC5 around GFF2518

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2516 and GFF2517 are separated by 72 nucleotidesGFF2517 and GFF2518 are separated by 131 nucleotidesGFF2518 and GFF2519 are separated by 272 nucleotides GFF2516 - Dihydroanticapsin 7-dehydrogenase, at 177,819 to 178,595 GFF2516 GFF2517 - HTH-type transcriptional regulator McbR, at 178,668 to 179,423 GFF2517 GFF2518 - hypothetical protein, at 179,555 to 180,835 GFF2518 GFF2519 - High-affinity branched-chain amino acid transport system permease protein LivH, at 181,108 to 181,989 GFF2519 Position (kb) 179 180 181Strain fitness (log2 ratio) -2 -1 0 1at 178.602 kb on - strandat 178.624 kb on + strandat 178.698 kb on + strandat 178.718 kb on + strandat 178.915 kb on + strand, within GFF2517at 178.916 kb on - strand, within GFF2517at 178.916 kb on - strand, within GFF2517at 179.299 kb on + strand, within GFF2517at 179.437 kb on + strandat 179.873 kb on + strand, within GFF2518at 179.874 kb on - strand, within GFF2518at 179.874 kb on - strand, within GFF2518at 179.875 kb on + strand, within GFF2518at 179.967 kb on + strand, within GFF2518at 180.024 kb on - strand, within GFF2518at 180.024 kb on - strand, within GFF2518at 180.024 kb on - strand, within GFF2518at 180.024 kb on - strand, within GFF2518at 180.056 kb on + strand, within GFF2518at 180.056 kb on + strand, within GFF2518at 180.056 kb on + strand, within GFF2518at 180.057 kb on - strand, within GFF2518at 180.057 kb on - strand, within GFF2518at 180.173 kb on + strand, within GFF2518at 180.173 kb on + strand, within GFF2518at 180.174 kb on - strand, within GFF2518at 180.174 kb on - strand, within GFF2518at 180.377 kb on - strand, within GFF2518at 180.530 kb on + strand, within GFF2518at 180.530 kb on + strand, within GFF2518at 180.530 kb on + strand, within GFF2518at 180.531 kb on - strand, within GFF2518at 180.531 kb on - strand, within GFF2518at 180.531 kb on - strand, within GFF2518at 180.650 kb on + strand, within GFF2518at 180.650 kb on + strand, within GFF2518at 180.650 kb on + strand, within GFF2518at 180.651 kb on - strand, within GFF2518at 180.651 kb on - strand, within GFF2518at 180.651 kb on - strand, within GFF2518at 180.651 kb on - strand, within GFF2518at 180.651 kb on - strand, within GFF2518at 180.689 kb on + strand, within GFF2518at 180.689 kb on + strand, within GFF2518at 180.689 kb on + strand, within GFF2518at 180.689 kb on + strand, within GFF2518at 180.689 kb on + strand, within GFF2518at 180.690 kb on - strand, within GFF2518at 180.690 kb on - strand, within GFF2518at 180.690 kb on - strand, within GFF2518at 180.690 kb on - strand, within GFF2518at 180.690 kb on - strand, within GFF2518at 180.690 kb on - strand, within GFF2518at 181.009 kb on + strandat 181.009 kb on + strandat 181.090 kb on + strandat 181.091 kb on - strandat 181.172 kb on - strandat 181.246 kb on + strand, within GFF2519at 181.246 kb on + strand, within GFF2519at 181.246 kb on + strand, within GFF2519at 181.261 kb on + strand, within GFF2519at 181.261 kb on + strand, within GFF2519at 181.261 kb on + strand, within GFF2519at 181.261 kb on + strand, within GFF2519at 181.262 kb on - strand, within GFF2519at 181.262 kb on - strand, within GFF2519at 181.263 kb on + strand, within GFF2519at 181.375 kb on + strand, within GFF2519at 181.375 kb on + strand, within GFF2519at 181.376 kb on - strand, within GFF2519at 181.525 kb on + strand, within GFF2519at 181.525 kb on + strand, within GFF2519at 181.526 kb on - strand, within GFF2519at 181.526 kb on - strand, within GFF2519at 181.678 kb on + strand, within GFF2519at 181.678 kb on + strand, within GFF2519at 181.679 kb on - strand, within GFF2519

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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178,602 - -0.7
178,624 + -0.4
178,698 + -0.8
178,718 + +0.0
178,915 + GFF2517 0.33 -2.0
178,916 - GFF2517 0.33 -0.0
178,916 - GFF2517 0.33 -1.5
179,299 + GFF2517 0.83 -0.3
179,437 + -1.4
179,873 + GFF2518 0.25 -0.1
179,874 - GFF2518 0.25 -0.5
179,874 - GFF2518 0.25 -0.2
179,875 + GFF2518 0.25 -0.3
179,967 + GFF2518 0.32 -1.1
180,024 - GFF2518 0.37 +0.1
180,024 - GFF2518 0.37 +0.2
180,024 - GFF2518 0.37 -0.7
180,024 - GFF2518 0.37 +0.2
180,056 + GFF2518 0.39 +0.0
180,056 + GFF2518 0.39 +0.0
180,056 + GFF2518 0.39 +0.1
180,057 - GFF2518 0.39 -1.1
180,057 - GFF2518 0.39 -0.0
180,173 + GFF2518 0.48 -0.9
180,173 + GFF2518 0.48 -0.4
180,174 - GFF2518 0.48 -0.5
180,174 - GFF2518 0.48 +0.1
180,377 - GFF2518 0.64 -1.3
180,530 + GFF2518 0.76 -0.4
180,530 + GFF2518 0.76 -0.4
180,530 + GFF2518 0.76 +0.2
180,531 - GFF2518 0.76 +0.8
180,531 - GFF2518 0.76 +0.1
180,531 - GFF2518 0.76 -0.9
180,650 + GFF2518 0.85 -0.9
180,650 + GFF2518 0.85 -0.5
180,650 + GFF2518 0.85 +1.6
180,651 - GFF2518 0.86 +0.1
180,651 - GFF2518 0.86 +1.4
180,651 - GFF2518 0.86 -0.9
180,651 - GFF2518 0.86 +0.1
180,651 - GFF2518 0.86 -0.3
180,689 + GFF2518 0.89 +0.1
180,689 + GFF2518 0.89 -0.8
180,689 + GFF2518 0.89 +0.4
180,689 + GFF2518 0.89 -0.3
180,689 + GFF2518 0.89 -0.5
180,690 - GFF2518 0.89 +0.2
180,690 - GFF2518 0.89 +0.0
180,690 - GFF2518 0.89 +0.7
180,690 - GFF2518 0.89 +0.3
180,690 - GFF2518 0.89 -0.6
180,690 - GFF2518 0.89 -0.7
181,009 + -1.2
181,009 + +0.1
181,090 + -0.0
181,091 - +0.8
181,172 - -0.6
181,246 + GFF2519 0.16 -0.4
181,246 + GFF2519 0.16 -0.6
181,246 + GFF2519 0.16 -0.2
181,261 + GFF2519 0.17 +0.1
181,261 + GFF2519 0.17 -0.2
181,261 + GFF2519 0.17 +0.4
181,261 + GFF2519 0.17 -0.4
181,262 - GFF2519 0.17 +0.6
181,262 - GFF2519 0.17 -0.5
181,263 + GFF2519 0.18 -1.4
181,375 + GFF2519 0.30 -0.8
181,375 + GFF2519 0.30 -0.8
181,376 - GFF2519 0.30 -0.5
181,525 + GFF2519 0.47 -0.1
181,525 + GFF2519 0.47 -0.8
181,526 - GFF2519 0.47 -1.0
181,526 - GFF2519 0.47 -0.2
181,678 + GFF2519 0.65 -0.2
181,678 + GFF2519 0.65 +0.6
181,679 - GFF2519 0.65 -0.5

Or see this region's nucleotide sequence