Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2474 and GFF2475 are separated by 101 nucleotides GFF2475 and GFF2476 are separated by 6 nucleotides GFF2476 and GFF2477 overlap by 4 nucleotides
GFF2474 - hypothetical protein, at 131,645 to 133,060
GFF2474
GFF2475 - hypothetical protein, at 133,162 to 134,040
GFF2475
GFF2476 - Cellobiose 2-epimerase, at 134,047 to 135,207
GFF2476
GFF2477 - Histidine biosynthesis bifunctional protein HisB, at 135,204 to 136,427
GFF2477
Position (kb) 134
135
136 Strain fitness (log2 ratio) -1
0
1 at 133.142 kb on - strand at 133.211 kb on - strand at 133.255 kb on + strand, within GFF2475 at 133.255 kb on + strand, within GFF2475 at 133.255 kb on + strand, within GFF2475 at 133.255 kb on + strand, within GFF2475 at 133.255 kb on + strand, within GFF2475 at 133.256 kb on - strand, within GFF2475 at 133.256 kb on - strand, within GFF2475 at 133.256 kb on - strand, within GFF2475 at 133.256 kb on - strand, within GFF2475 at 133.416 kb on - strand, within GFF2475 at 133.471 kb on + strand, within GFF2475 at 133.472 kb on - strand, within GFF2475 at 133.542 kb on - strand, within GFF2475 at 133.618 kb on + strand, within GFF2475 at 133.663 kb on + strand, within GFF2475 at 133.664 kb on - strand, within GFF2475 at 133.664 kb on - strand, within GFF2475 at 133.735 kb on + strand, within GFF2475 at 133.735 kb on + strand, within GFF2475 at 133.736 kb on - strand, within GFF2475 at 133.921 kb on + strand, within GFF2475 at 133.922 kb on - strand, within GFF2475 at 133.922 kb on - strand, within GFF2475 at 133.973 kb on - strand at 134.102 kb on + strand at 134.102 kb on + strand at 134.102 kb on + strand at 134.103 kb on - strand at 134.103 kb on - strand at 134.192 kb on + strand, within GFF2476 at 134.192 kb on + strand, within GFF2476 at 134.192 kb on + strand, within GFF2476 at 134.534 kb on + strand, within GFF2476 at 134.636 kb on + strand, within GFF2476 at 134.636 kb on + strand, within GFF2476 at 134.636 kb on + strand, within GFF2476 at 134.636 kb on + strand, within GFF2476 at 134.637 kb on - strand, within GFF2476 at 134.777 kb on + strand, within GFF2476 at 134.778 kb on - strand, within GFF2476 at 134.778 kb on - strand, within GFF2476 at 134.843 kb on + strand, within GFF2476 at 134.843 kb on + strand, within GFF2476 at 134.934 kb on - strand, within GFF2476 at 134.934 kb on - strand, within GFF2476 at 135.005 kb on + strand, within GFF2476 at 135.006 kb on - strand, within GFF2476 at 135.006 kb on - strand, within GFF2476 at 135.006 kb on - strand, within GFF2476
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 133,142 - -0.4 133,211 - +0.5 133,255 + GFF2475 0.11 +1.1 133,255 + GFF2475 0.11 -0.3 133,255 + GFF2475 0.11 +0.4 133,255 + GFF2475 0.11 -1.0 133,255 + GFF2475 0.11 -0.2 133,256 - GFF2475 0.11 +0.3 133,256 - GFF2475 0.11 +0.3 133,256 - GFF2475 0.11 +0.0 133,256 - GFF2475 0.11 +0.6 133,416 - GFF2475 0.29 -0.1 133,471 + GFF2475 0.35 -0.2 133,472 - GFF2475 0.35 +0.6 133,542 - GFF2475 0.43 -0.6 133,618 + GFF2475 0.52 -0.0 133,663 + GFF2475 0.57 -0.2 133,664 - GFF2475 0.57 -0.1 133,664 - GFF2475 0.57 +1.0 133,735 + GFF2475 0.65 +0.4 133,735 + GFF2475 0.65 +0.7 133,736 - GFF2475 0.65 -0.1 133,921 + GFF2475 0.86 +0.6 133,922 - GFF2475 0.86 -1.1 133,922 - GFF2475 0.86 +0.6 133,973 - -1.6 134,102 + -1.0 134,102 + +0.1 134,102 + -0.2 134,103 - +1.0 134,103 - +0.2 134,192 + GFF2476 0.12 +0.1 134,192 + GFF2476 0.12 +1.4 134,192 + GFF2476 0.12 -0.1 134,534 + GFF2476 0.42 +0.8 134,636 + GFF2476 0.51 +0.6 134,636 + GFF2476 0.51 -0.2 134,636 + GFF2476 0.51 +0.3 134,636 + GFF2476 0.51 +0.4 134,637 - GFF2476 0.51 -0.3 134,777 + GFF2476 0.63 +0.4 134,778 - GFF2476 0.63 -0.1 134,778 - GFF2476 0.63 -0.2 134,843 + GFF2476 0.69 +0.1 134,843 + GFF2476 0.69 +0.4 134,934 - GFF2476 0.76 +0.5 134,934 - GFF2476 0.76 +0.6 135,005 + GFF2476 0.83 -1.0 135,006 - GFF2476 0.83 +0.7 135,006 - GFF2476 0.83 -0.7 135,006 - GFF2476 0.83 -0.9
Or see this region's nucleotide sequence