Strain Fitness in Xanthobacter sp. DMC5 around GFF2463

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2462 and GFF2463 are separated by 8 nucleotidesGFF2463 and GFF2464 are separated by 12 nucleotidesGFF2464 and GFF2465 are separated by 134 nucleotides GFF2462 - Gamma-glutamylputrescine synthetase PuuA, at 119,860 to 121,263 GFF2462 GFF2463 - Gamma-glutamylputrescine oxidoreductase, at 121,272 to 122,603 GFF2463 GFF2464 - hypothetical protein, at 122,616 to 122,969 GFF2464 GFF2465 - hypothetical protein, at 123,104 to 123,847 GFF2465 Position (kb) 121 122 123Strain fitness (log2 ratio) -2 -1 0 1 2at 120.289 kb on + strand, within GFF2462at 120.290 kb on - strand, within GFF2462at 120.337 kb on + strand, within GFF2462at 120.338 kb on - strand, within GFF2462at 120.338 kb on - strand, within GFF2462at 120.338 kb on - strand, within GFF2462at 120.424 kb on + strand, within GFF2462at 120.424 kb on + strand, within GFF2462at 120.424 kb on + strand, within GFF2462at 120.472 kb on + strand, within GFF2462at 120.472 kb on + strand, within GFF2462at 120.472 kb on + strand, within GFF2462at 120.472 kb on + strand, within GFF2462at 120.472 kb on + strand, within GFF2462at 120.472 kb on + strand, within GFF2462at 120.473 kb on - strand, within GFF2462at 120.473 kb on - strand, within GFF2462at 120.473 kb on - strand, within GFF2462at 120.473 kb on - strand, within GFF2462at 120.473 kb on - strand, within GFF2462at 120.473 kb on - strand, within GFF2462at 120.473 kb on - strand, within GFF2462at 120.473 kb on - strand, within GFF2462at 120.473 kb on - strand, within GFF2462at 120.473 kb on - strand, within GFF2462at 120.473 kb on - strand, within GFF2462at 120.473 kb on - strand, within GFF2462at 120.473 kb on - strand, within GFF2462at 120.478 kb on + strand, within GFF2462at 120.637 kb on + strand, within GFF2462at 120.637 kb on + strand, within GFF2462at 120.647 kb on - strand, within GFF2462at 120.797 kb on - strand, within GFF2462at 120.797 kb on - strand, within GFF2462at 120.829 kb on + strand, within GFF2462at 120.830 kb on - strand, within GFF2462at 120.841 kb on + strand, within GFF2462at 120.893 kb on - strand, within GFF2462at 120.986 kb on - strand, within GFF2462at 121.211 kb on - strandat 121.244 kb on - strandat 121.354 kb on - strandat 121.440 kb on - strand, within GFF2463at 121.673 kb on + strand, within GFF2463at 121.725 kb on + strand, within GFF2463at 121.725 kb on + strand, within GFF2463at 121.726 kb on - strand, within GFF2463at 121.741 kb on - strand, within GFF2463at 121.771 kb on - strand, within GFF2463at 121.771 kb on - strand, within GFF2463at 121.837 kb on - strand, within GFF2463at 121.839 kb on + strand, within GFF2463at 121.839 kb on + strand, within GFF2463at 121.839 kb on + strand, within GFF2463at 121.839 kb on + strand, within GFF2463at 121.840 kb on - strand, within GFF2463at 121.840 kb on - strand, within GFF2463at 122.021 kb on - strand, within GFF2463at 122.097 kb on + strand, within GFF2463at 122.098 kb on - strand, within GFF2463at 122.098 kb on - strand, within GFF2463at 122.187 kb on + strand, within GFF2463at 122.187 kb on + strand, within GFF2463at 122.188 kb on - strand, within GFF2463at 122.238 kb on + strand, within GFF2463at 122.239 kb on - strand, within GFF2463at 122.328 kb on + strand, within GFF2463at 122.328 kb on + strand, within GFF2463at 122.328 kb on + strand, within GFF2463at 122.416 kb on - strand, within GFF2463at 122.416 kb on - strand, within GFF2463at 122.417 kb on + strand, within GFF2463at 122.418 kb on - strand, within GFF2463at 122.578 kb on - strandat 123.055 kb on - strandat 123.055 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
120,289 + GFF2462 0.31 -0.3
120,290 - GFF2462 0.31 -0.2
120,337 + GFF2462 0.34 -0.3
120,338 - GFF2462 0.34 -0.2
120,338 - GFF2462 0.34 +0.3
120,338 - GFF2462 0.34 +0.4
120,424 + GFF2462 0.40 +0.4
120,424 + GFF2462 0.40 +0.6
120,424 + GFF2462 0.40 -0.3
120,472 + GFF2462 0.44 +0.1
120,472 + GFF2462 0.44 -0.3
120,472 + GFF2462 0.44 -0.0
120,472 + GFF2462 0.44 -1.0
120,472 + GFF2462 0.44 +0.1
120,472 + GFF2462 0.44 -0.3
120,473 - GFF2462 0.44 -1.3
120,473 - GFF2462 0.44 -0.4
120,473 - GFF2462 0.44 -0.7
120,473 - GFF2462 0.44 -0.5
120,473 - GFF2462 0.44 -0.4
120,473 - GFF2462 0.44 +0.5
120,473 - GFF2462 0.44 -0.0
120,473 - GFF2462 0.44 -1.4
120,473 - GFF2462 0.44 -0.9
120,473 - GFF2462 0.44 +0.2
120,473 - GFF2462 0.44 -0.0
120,473 - GFF2462 0.44 +0.9
120,473 - GFF2462 0.44 -0.3
120,478 + GFF2462 0.44 -0.3
120,637 + GFF2462 0.55 -0.3
120,637 + GFF2462 0.55 -0.4
120,647 - GFF2462 0.56 -0.3
120,797 - GFF2462 0.67 -0.2
120,797 - GFF2462 0.67 -0.2
120,829 + GFF2462 0.69 +1.1
120,830 - GFF2462 0.69 +1.1
120,841 + GFF2462 0.70 -0.6
120,893 - GFF2462 0.74 +1.8
120,986 - GFF2462 0.80 -1.1
121,211 - +0.8
121,244 - -0.1
121,354 - -0.6
121,440 - GFF2463 0.13 -0.6
121,673 + GFF2463 0.30 +0.1
121,725 + GFF2463 0.34 +0.2
121,725 + GFF2463 0.34 -1.3
121,726 - GFF2463 0.34 -1.0
121,741 - GFF2463 0.35 -0.9
121,771 - GFF2463 0.37 +0.2
121,771 - GFF2463 0.37 -1.0
121,837 - GFF2463 0.42 -0.4
121,839 + GFF2463 0.43 -0.3
121,839 + GFF2463 0.43 +0.4
121,839 + GFF2463 0.43 -1.3
121,839 + GFF2463 0.43 -1.4
121,840 - GFF2463 0.43 -0.1
121,840 - GFF2463 0.43 +0.4
122,021 - GFF2463 0.56 -0.4
122,097 + GFF2463 0.62 -2.1
122,098 - GFF2463 0.62 -0.8
122,098 - GFF2463 0.62 -0.9
122,187 + GFF2463 0.69 +0.0
122,187 + GFF2463 0.69 -0.3
122,188 - GFF2463 0.69 -0.9
122,238 + GFF2463 0.73 -0.4
122,239 - GFF2463 0.73 -1.4
122,328 + GFF2463 0.79 -0.6
122,328 + GFF2463 0.79 -0.2
122,328 + GFF2463 0.79 -0.4
122,416 - GFF2463 0.86 -1.2
122,416 - GFF2463 0.86 -0.4
122,417 + GFF2463 0.86 -0.5
122,418 - GFF2463 0.86 -0.4
122,578 - -0.1
123,055 - -0.4
123,055 - -0.2

Or see this region's nucleotide sequence