Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2407 and GFF2408 are separated by 259 nucleotides GFF2408 and GFF2409 are separated by 128 nucleotides
GFF2407 - Beta-alanine--pyruvate aminotransferase, at 62,507 to 63,862
GFF2407
GFF2408 - hypothetical protein, at 64,122 to 65,999
GFF2408
GFF2409 - Regulatory protein LuxO, at 66,128 to 67,513
GFF2409
Position (kb) 64
65
66 Strain fitness (log2 ratio) -2
-1
0
1 at 63.252 kb on + strand, within GFF2407 at 63.253 kb on - strand, within GFF2407 at 63.294 kb on + strand, within GFF2407 at 63.294 kb on + strand, within GFF2407 at 63.294 kb on + strand, within GFF2407 at 63.294 kb on + strand, within GFF2407 at 63.396 kb on + strand, within GFF2407 at 63.582 kb on + strand, within GFF2407 at 63.583 kb on - strand, within GFF2407 at 63.583 kb on - strand, within GFF2407 at 63.717 kb on + strand, within GFF2407 at 63.717 kb on + strand, within GFF2407 at 63.717 kb on + strand, within GFF2407 at 63.718 kb on - strand, within GFF2407 at 63.720 kb on + strand, within GFF2407 at 63.721 kb on - strand, within GFF2407 at 63.721 kb on - strand, within GFF2407 at 63.782 kb on - strand at 63.988 kb on + strand at 64.238 kb on + strand at 64.238 kb on + strand at 64.239 kb on - strand at 64.336 kb on - strand, within GFF2408 at 64.497 kb on + strand, within GFF2408 at 64.497 kb on + strand, within GFF2408 at 64.497 kb on + strand, within GFF2408 at 64.498 kb on - strand, within GFF2408 at 64.498 kb on - strand, within GFF2408 at 64.498 kb on - strand, within GFF2408 at 65.470 kb on - strand, within GFF2408 at 65.470 kb on - strand, within GFF2408 at 65.688 kb on + strand, within GFF2408 at 65.688 kb on + strand, within GFF2408 at 65.688 kb on + strand, within GFF2408 at 66.028 kb on + strand at 66.075 kb on - strand at 66.299 kb on - strand, within GFF2409 at 66.603 kb on - strand, within GFF2409
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 63,252 + GFF2407 0.55 +0.1 63,253 - GFF2407 0.55 +0.4 63,294 + GFF2407 0.58 +0.7 63,294 + GFF2407 0.58 +0.5 63,294 + GFF2407 0.58 +0.4 63,294 + GFF2407 0.58 +0.5 63,396 + GFF2407 0.66 +0.2 63,582 + GFF2407 0.79 -0.5 63,583 - GFF2407 0.79 +0.6 63,583 - GFF2407 0.79 +0.1 63,717 + GFF2407 0.89 +0.5 63,717 + GFF2407 0.89 +0.7 63,717 + GFF2407 0.89 +0.7 63,718 - GFF2407 0.89 -0.3 63,720 + GFF2407 0.89 +0.6 63,721 - GFF2407 0.90 +0.9 63,721 - GFF2407 0.90 -0.1 63,782 - -0.0 63,988 + +0.7 64,238 + -0.9 64,238 + +0.1 64,239 - -0.1 64,336 - GFF2408 0.11 +0.1 64,497 + GFF2408 0.20 -0.1 64,497 + GFF2408 0.20 -0.9 64,497 + GFF2408 0.20 +0.4 64,498 - GFF2408 0.20 -1.9 64,498 - GFF2408 0.20 -0.0 64,498 - GFF2408 0.20 +0.4 65,470 - GFF2408 0.72 -1.0 65,470 - GFF2408 0.72 -0.4 65,688 + GFF2408 0.83 +0.3 65,688 + GFF2408 0.83 +0.1 65,688 + GFF2408 0.83 -1.0 66,028 + +0.1 66,075 - -2.2 66,299 - GFF2409 0.12 -0.5 66,603 - GFF2409 0.34 -0.6
Or see this region's nucleotide sequence