Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2389 and GFF2390 are separated by 60 nucleotides GFF2390 and GFF2391 are separated by 270 nucleotides GFF2391 and GFF2392 are separated by 82 nucleotides GFF2392 and GFF2393 overlap by 4 nucleotides
GFF2389 - Sulfite reductase [ferredoxin], at 41,746 to 43,398
GFF2389
GFF2390 - hypothetical protein, at 43,459 to 43,785
GFF2390
GFF2391 - 1,2-epoxyphenylacetyl-CoA isomerase, at 44,056 to 44,850
GFF2391
GFF2392 - hypothetical protein, at 44,933 to 45,505
GFF2392
GFF2393 - hypothetical protein, at 45,502 to 46,194
GFF2393
Position (kb) 44
45 Strain fitness (log2 ratio) -1
0
1
2 at 43.166 kb on + strand, within GFF2389 at 43.166 kb on + strand, within GFF2389 at 43.167 kb on - strand, within GFF2389 at 43.167 kb on - strand, within GFF2389 at 43.167 kb on - strand, within GFF2389 at 43.244 kb on + strand at 43.244 kb on + strand at 43.262 kb on + strand at 43.262 kb on + strand at 43.389 kb on - strand at 43.389 kb on - strand at 43.394 kb on + strand at 43.394 kb on + strand at 43.394 kb on + strand at 43.394 kb on + strand at 43.394 kb on + strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.395 kb on - strand at 43.806 kb on - strand at 43.928 kb on + strand at 43.986 kb on - strand at 44.467 kb on + strand, within GFF2391 at 44.467 kb on + strand, within GFF2391 at 44.686 kb on + strand, within GFF2391 at 44.907 kb on + strand at 44.908 kb on - strand at 44.908 kb on - strand at 44.908 kb on - strand at 44.940 kb on + strand at 44.940 kb on + strand at 45.323 kb on + strand, within GFF2392 at 45.332 kb on - strand, within GFF2392 at 45.428 kb on + strand, within GFF2392
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 43,166 + GFF2389 0.86 +1.1 43,166 + GFF2389 0.86 +0.6 43,167 - GFF2389 0.86 -0.1 43,167 - GFF2389 0.86 +1.1 43,167 - GFF2389 0.86 +1.3 43,244 + +0.7 43,244 + +1.1 43,262 + +0.9 43,262 + +1.4 43,389 - +2.1 43,389 - +1.2 43,394 + +0.5 43,394 + +1.0 43,394 + +0.5 43,394 + +2.1 43,394 + +0.9 43,395 - +0.9 43,395 - +2.3 43,395 - +1.3 43,395 - +1.7 43,395 - +0.8 43,395 - +0.9 43,395 - +2.1 43,395 - -0.1 43,395 - +1.0 43,395 - -0.2 43,395 - +1.0 43,395 - +0.7 43,395 - +1.1 43,395 - +1.7 43,395 - +0.1 43,395 - +2.1 43,806 - -0.3 43,928 + +1.0 43,986 - +0.3 44,467 + GFF2391 0.52 +0.3 44,467 + GFF2391 0.52 -0.1 44,686 + GFF2391 0.79 -1.2 44,907 + -0.3 44,908 - +0.1 44,908 - +1.0 44,908 - +1.6 44,940 + +0.6 44,940 + -0.2 45,323 + GFF2392 0.68 +1.4 45,332 - GFF2392 0.70 -0.2 45,428 + GFF2392 0.86 +0.8
Or see this region's nucleotide sequence