Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2384 and GFF2385 overlap by 4 nucleotides GFF2385 and GFF2386 are separated by 111 nucleotides GFF2386 and GFF2387 are separated by 115 nucleotides GFF2387 and GFF2388 are separated by 6 nucleotides
GFF2384 - Sulfate transport system permease protein CysW, at 37,509 to 38,435
GFF2384
GFF2385 - Sulfate transport system permease protein CysT, at 38,432 to 39,286
GFF2385
GFF2386 - Sulfate-binding protein, at 39,398 to 40,414
GFF2386
GFF2387 - Phosphoadenosine phosphosulfate reductase, at 40,530 to 41,240
GFF2387
GFF2388 - hypothetical protein, at 41,247 to 41,759
GFF2388
Position (kb) 39
40
41 Strain fitness (log2 ratio) -2
-1
0
1 at 38.544 kb on + strand, within GFF2385 at 38.545 kb on - strand, within GFF2385 at 38.634 kb on + strand, within GFF2385 at 38.691 kb on - strand, within GFF2385 at 38.691 kb on - strand, within GFF2385 at 38.913 kb on + strand, within GFF2385 at 38.914 kb on - strand, within GFF2385 at 39.004 kb on - strand, within GFF2385 at 39.007 kb on - strand, within GFF2385 at 39.295 kb on + strand at 39.295 kb on + strand at 39.295 kb on + strand at 39.296 kb on - strand at 39.296 kb on - strand at 39.298 kb on - strand at 39.298 kb on - strand at 39.552 kb on + strand, within GFF2386 at 39.553 kb on - strand, within GFF2386 at 39.556 kb on - strand, within GFF2386 at 39.556 kb on - strand, within GFF2386 at 39.591 kb on + strand, within GFF2386 at 39.591 kb on + strand, within GFF2386 at 39.591 kb on + strand, within GFF2386 at 39.592 kb on - strand, within GFF2386 at 39.592 kb on - strand, within GFF2386 at 39.592 kb on - strand, within GFF2386 at 39.607 kb on - strand, within GFF2386 at 39.741 kb on + strand, within GFF2386 at 39.741 kb on + strand, within GFF2386 at 39.741 kb on + strand, within GFF2386 at 39.741 kb on + strand, within GFF2386 at 39.741 kb on + strand, within GFF2386 at 39.742 kb on - strand, within GFF2386 at 39.843 kb on + strand, within GFF2386 at 39.844 kb on - strand, within GFF2386 at 39.921 kb on + strand, within GFF2386 at 39.922 kb on - strand, within GFF2386 at 39.922 kb on - strand, within GFF2386 at 40.054 kb on - strand, within GFF2386 at 40.132 kb on - strand, within GFF2386 at 40.284 kb on + strand, within GFF2386 at 40.284 kb on + strand, within GFF2386 at 40.284 kb on + strand, within GFF2386 at 40.284 kb on + strand, within GFF2386 at 40.285 kb on - strand, within GFF2386 at 40.285 kb on - strand, within GFF2386 at 40.285 kb on - strand, within GFF2386 at 40.285 kb on - strand, within GFF2386 at 40.285 kb on - strand, within GFF2386 at 40.285 kb on - strand, within GFF2386 at 40.305 kb on + strand, within GFF2386 at 40.505 kb on + strand at 40.553 kb on + strand at 40.700 kb on - strand, within GFF2387 at 41.326 kb on + strand, within GFF2388 at 41.327 kb on - strand, within GFF2388 at 41.338 kb on + strand, within GFF2388 at 41.338 kb on + strand, within GFF2388 at 41.339 kb on - strand, within GFF2388 at 41.339 kb on - strand, within GFF2388
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 38,544 + GFF2385 0.13 +1.2 38,545 - GFF2385 0.13 +0.3 38,634 + GFF2385 0.24 +0.8 38,691 - GFF2385 0.30 +0.1 38,691 - GFF2385 0.30 -0.8 38,913 + GFF2385 0.56 +0.5 38,914 - GFF2385 0.56 +0.2 39,004 - GFF2385 0.67 -0.1 39,007 - GFF2385 0.67 +0.7 39,295 + -0.5 39,295 + -0.2 39,295 + +0.8 39,296 - +0.1 39,296 - -0.1 39,298 - -0.1 39,298 - +0.0 39,552 + GFF2386 0.15 -0.8 39,553 - GFF2386 0.15 -0.6 39,556 - GFF2386 0.16 +0.0 39,556 - GFF2386 0.16 +0.2 39,591 + GFF2386 0.19 +0.5 39,591 + GFF2386 0.19 +1.6 39,591 + GFF2386 0.19 +0.3 39,592 - GFF2386 0.19 +0.6 39,592 - GFF2386 0.19 -0.5 39,592 - GFF2386 0.19 +0.1 39,607 - GFF2386 0.21 +0.4 39,741 + GFF2386 0.34 +0.5 39,741 + GFF2386 0.34 -0.1 39,741 + GFF2386 0.34 -0.6 39,741 + GFF2386 0.34 -0.4 39,741 + GFF2386 0.34 +0.5 39,742 - GFF2386 0.34 -0.0 39,843 + GFF2386 0.44 -0.1 39,844 - GFF2386 0.44 +0.1 39,921 + GFF2386 0.51 +1.1 39,922 - GFF2386 0.52 -0.3 39,922 - GFF2386 0.52 -0.2 40,054 - GFF2386 0.65 -0.2 40,132 - GFF2386 0.72 -0.3 40,284 + GFF2386 0.87 +0.3 40,284 + GFF2386 0.87 +1.7 40,284 + GFF2386 0.87 -0.8 40,284 + GFF2386 0.87 +0.7 40,285 - GFF2386 0.87 -0.2 40,285 - GFF2386 0.87 +0.1 40,285 - GFF2386 0.87 -0.2 40,285 - GFF2386 0.87 -1.9 40,285 - GFF2386 0.87 +0.9 40,285 - GFF2386 0.87 +0.1 40,305 + GFF2386 0.89 -0.6 40,505 + +1.0 40,553 + +0.4 40,700 - GFF2387 0.24 -0.1 41,326 + GFF2388 0.15 +0.2 41,327 - GFF2388 0.16 +0.3 41,338 + GFF2388 0.18 +0.2 41,338 + GFF2388 0.18 +0.2 41,339 - GFF2388 0.18 +0.1 41,339 - GFF2388 0.18 +0.3
Or see this region's nucleotide sequence