Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2351 and GFF2352 are separated by 93 nucleotides GFF2352 and GFF2353 are separated by 173 nucleotides GFF2353 and GFF2354 are separated by 219 nucleotides
GFF2351 - hypothetical protein, at 2,991 to 5,258
GFF2351
GFF2352 - hypothetical protein, at 5,352 to 5,627
GFF2352
GFF2353 - hypothetical protein, at 5,801 to 7,174
GFF2353
GFF2354 - Enoyl-[acyl-carrier-protein] reductase [NADH] FabI, at 7,394 to 8,158
GFF2354
Position (kb) 5
6
7
8 Strain fitness (log2 ratio) -1
0
1 at 4.905 kb on + strand, within GFF2351 at 4.906 kb on - strand, within GFF2351 at 4.906 kb on - strand, within GFF2351 at 5.056 kb on - strand at 5.067 kb on + strand at 5.068 kb on - strand at 5.068 kb on - strand at 5.124 kb on + strand at 5.124 kb on + strand at 5.160 kb on + strand at 5.161 kb on - strand at 5.247 kb on + strand at 5.247 kb on + strand at 5.248 kb on - strand at 5.248 kb on - strand at 5.248 kb on - strand at 5.400 kb on + strand, within GFF2352 at 5.400 kb on + strand, within GFF2352 at 5.400 kb on + strand, within GFF2352 at 5.401 kb on - strand, within GFF2352 at 5.401 kb on - strand, within GFF2352 at 5.465 kb on - strand, within GFF2352 at 5.465 kb on - strand, within GFF2352 at 5.482 kb on + strand, within GFF2352 at 5.494 kb on + strand, within GFF2352 at 5.494 kb on + strand, within GFF2352 at 5.560 kb on + strand, within GFF2352 at 5.561 kb on - strand, within GFF2352 at 5.561 kb on - strand, within GFF2352 at 5.715 kb on - strand at 5.776 kb on + strand at 5.776 kb on + strand at 5.776 kb on + strand at 5.777 kb on - strand at 5.777 kb on - strand at 5.777 kb on - strand at 5.870 kb on - strand at 6.019 kb on - strand, within GFF2353 at 6.019 kb on - strand, within GFF2353 at 6.171 kb on + strand, within GFF2353 at 6.171 kb on + strand, within GFF2353 at 6.192 kb on + strand, within GFF2353 at 6.193 kb on - strand, within GFF2353 at 6.246 kb on + strand, within GFF2353 at 6.247 kb on - strand, within GFF2353 at 6.285 kb on + strand, within GFF2353 at 6.285 kb on + strand, within GFF2353 at 6.285 kb on + strand, within GFF2353 at 6.285 kb on + strand, within GFF2353 at 6.285 kb on + strand, within GFF2353 at 6.285 kb on + strand, within GFF2353 at 6.286 kb on - strand, within GFF2353 at 6.299 kb on + strand, within GFF2353 at 6.300 kb on - strand, within GFF2353 at 6.300 kb on - strand, within GFF2353 at 6.300 kb on - strand, within GFF2353 at 6.372 kb on - strand, within GFF2353 at 6.624 kb on + strand, within GFF2353 at 6.624 kb on + strand, within GFF2353 at 6.624 kb on + strand, within GFF2353 at 6.625 kb on - strand, within GFF2353 at 6.714 kb on + strand, within GFF2353 at 6.714 kb on + strand, within GFF2353 at 6.715 kb on - strand, within GFF2353 at 6.727 kb on - strand, within GFF2353 at 6.841 kb on + strand, within GFF2353 at 6.841 kb on + strand, within GFF2353 at 6.842 kb on - strand, within GFF2353 at 7.341 kb on - strand at 7.341 kb on - strand at 7.411 kb on - strand at 7.695 kb on + strand, within GFF2354 at 7.722 kb on + strand, within GFF2354 at 7.722 kb on + strand, within GFF2354 at 8.044 kb on - strand, within GFF2354
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 4,905 + GFF2351 0.84 -0.1 4,906 - GFF2351 0.84 -0.2 4,906 - GFF2351 0.84 +0.3 5,056 - -0.2 5,067 + +0.3 5,068 - +0.1 5,068 - -0.2 5,124 + +0.3 5,124 + -0.9 5,160 + -1.2 5,161 - -0.0 5,247 + -0.4 5,247 + -0.5 5,248 - -1.2 5,248 - +0.7 5,248 - +0.1 5,400 + GFF2352 0.17 -0.7 5,400 + GFF2352 0.17 +0.3 5,400 + GFF2352 0.17 +0.2 5,401 - GFF2352 0.18 +0.3 5,401 - GFF2352 0.18 +0.2 5,465 - GFF2352 0.41 -0.4 5,465 - GFF2352 0.41 -0.5 5,482 + GFF2352 0.47 -0.6 5,494 + GFF2352 0.51 +0.1 5,494 + GFF2352 0.51 -0.4 5,560 + GFF2352 0.75 +1.2 5,561 - GFF2352 0.76 +0.5 5,561 - GFF2352 0.76 -0.0 5,715 - -0.7 5,776 + +0.1 5,776 + +0.8 5,776 + +0.0 5,777 - +0.1 5,777 - +1.1 5,777 - -1.0 5,870 - +0.5 6,019 - GFF2353 0.16 -0.3 6,019 - GFF2353 0.16 -0.7 6,171 + GFF2353 0.27 -0.9 6,171 + GFF2353 0.27 +0.3 6,192 + GFF2353 0.28 +0.2 6,193 - GFF2353 0.29 -1.4 6,246 + GFF2353 0.32 -1.4 6,247 - GFF2353 0.32 -0.5 6,285 + GFF2353 0.35 -0.0 6,285 + GFF2353 0.35 +0.1 6,285 + GFF2353 0.35 +0.3 6,285 + GFF2353 0.35 -0.4 6,285 + GFF2353 0.35 -0.4 6,285 + GFF2353 0.35 -0.2 6,286 - GFF2353 0.35 -1.2 6,299 + GFF2353 0.36 -0.7 6,300 - GFF2353 0.36 +0.3 6,300 - GFF2353 0.36 +0.2 6,300 - GFF2353 0.36 +0.1 6,372 - GFF2353 0.42 +0.5 6,624 + GFF2353 0.60 -0.3 6,624 + GFF2353 0.60 -0.3 6,624 + GFF2353 0.60 -0.3 6,625 - GFF2353 0.60 -0.1 6,714 + GFF2353 0.66 +0.0 6,714 + GFF2353 0.66 +0.2 6,715 - GFF2353 0.67 +0.4 6,727 - GFF2353 0.67 -0.0 6,841 + GFF2353 0.76 -0.9 6,841 + GFF2353 0.76 -1.4 6,842 - GFF2353 0.76 -0.1 7,341 - -0.3 7,341 - -1.6 7,411 - +0.2 7,695 + GFF2354 0.39 -0.0 7,722 + GFF2354 0.43 -0.8 7,722 + GFF2354 0.43 -0.1 8,044 - GFF2354 0.85 -0.1
Or see this region's nucleotide sequence