Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2320 and GFF2321 are separated by 194 nucleotides GFF2321 and GFF2322 are separated by 73 nucleotides GFF2322 and GFF2323 overlap by 4 nucleotides GFF2323 and GFF2324 are separated by 5 nucleotides GFF2324 and GFF2325 overlap by 4 nucleotides
GFF2320 - hypothetical protein, at 1,036,087 to 1,036,383
GFF2320
GFF2321 - ECF RNA polymerase sigma factor EcfG, at 1,036,578 to 1,037,171
GFF2321
GFF2322 - Homoserine O-acetyltransferase, at 1,037,245 to 1,038,450
GFF2322
GFF2323 - Bifunctional methionine biosynthesis protein MetXA/MetW, at 1,038,447 to 1,039,106
GFF2323
GFF2324 - putative endoribonuclease MazF, at 1,039,112 to 1,039,435
GFF2324
GFF2325 - hypothetical protein, at 1,039,432 to 1,039,653
GFF2325
Position (kb) 1037
1038
1039 Strain fitness (log2 ratio) -2
-1
0
1 at 1036.395 kb on - strand at 1036.458 kb on + strand at 1036.567 kb on + strand at 1036.568 kb on - strand at 1036.614 kb on + strand at 1036.815 kb on + strand, within GFF2321 at 1036.816 kb on - strand, within GFF2321 at 1036.818 kb on + strand, within GFF2321 at 1036.819 kb on - strand, within GFF2321 at 1037.399 kb on - strand, within GFF2322 at 1037.399 kb on - strand, within GFF2322 at 1037.789 kb on - strand, within GFF2322 at 1037.915 kb on - strand, within GFF2322 at 1037.915 kb on - strand, within GFF2322 at 1037.980 kb on + strand, within GFF2322 at 1037.980 kb on + strand, within GFF2322 at 1037.980 kb on + strand, within GFF2322 at 1037.981 kb on - strand, within GFF2322 at 1038.079 kb on + strand, within GFF2322 at 1038.079 kb on + strand, within GFF2322 at 1038.079 kb on + strand, within GFF2322 at 1038.079 kb on + strand, within GFF2322 at 1038.080 kb on - strand, within GFF2322 at 1038.080 kb on - strand, within GFF2322 at 1038.080 kb on - strand, within GFF2322 at 1038.080 kb on - strand, within GFF2322 at 1038.080 kb on - strand, within GFF2322 at 1038.080 kb on - strand, within GFF2322 at 1038.130 kb on + strand, within GFF2322 at 1038.130 kb on + strand, within GFF2322 at 1038.131 kb on - strand, within GFF2322 at 1038.136 kb on + strand, within GFF2322 at 1038.136 kb on + strand, within GFF2322 at 1038.136 kb on + strand, within GFF2322 at 1038.136 kb on + strand, within GFF2322 at 1038.157 kb on + strand, within GFF2322 at 1038.158 kb on - strand, within GFF2322 at 1038.178 kb on + strand, within GFF2322 at 1038.179 kb on - strand, within GFF2322 at 1038.179 kb on - strand, within GFF2322 at 1038.179 kb on - strand, within GFF2322 at 1038.718 kb on - strand, within GFF2323 at 1038.738 kb on + strand, within GFF2323 at 1038.738 kb on + strand, within GFF2323 at 1038.739 kb on - strand, within GFF2323 at 1038.739 kb on - strand, within GFF2323 at 1038.918 kb on + strand, within GFF2323 at 1039.105 kb on - strand at 1039.114 kb on - strand at 1039.392 kb on + strand, within GFF2324
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 1,036,395 - +0.0 1,036,458 + +0.7 1,036,567 + +0.3 1,036,568 - +1.7 1,036,614 + -0.5 1,036,815 + GFF2321 0.40 +0.7 1,036,816 - GFF2321 0.40 +0.5 1,036,818 + GFF2321 0.40 -2.1 1,036,819 - GFF2321 0.41 -0.3 1,037,399 - GFF2322 0.13 +0.5 1,037,399 - GFF2322 0.13 +0.3 1,037,789 - GFF2322 0.45 +0.3 1,037,915 - GFF2322 0.56 +0.0 1,037,915 - GFF2322 0.56 +0.2 1,037,980 + GFF2322 0.61 -0.5 1,037,980 + GFF2322 0.61 +0.6 1,037,980 + GFF2322 0.61 -0.1 1,037,981 - GFF2322 0.61 +0.3 1,038,079 + GFF2322 0.69 -0.8 1,038,079 + GFF2322 0.69 -0.6 1,038,079 + GFF2322 0.69 +0.4 1,038,079 + GFF2322 0.69 +0.9 1,038,080 - GFF2322 0.69 -0.0 1,038,080 - GFF2322 0.69 +0.6 1,038,080 - GFF2322 0.69 -0.1 1,038,080 - GFF2322 0.69 +0.5 1,038,080 - GFF2322 0.69 +0.2 1,038,080 - GFF2322 0.69 +0.1 1,038,130 + GFF2322 0.73 +1.4 1,038,130 + GFF2322 0.73 +0.9 1,038,131 - GFF2322 0.73 -0.8 1,038,136 + GFF2322 0.74 +0.0 1,038,136 + GFF2322 0.74 +0.5 1,038,136 + GFF2322 0.74 +0.3 1,038,136 + GFF2322 0.74 -0.9 1,038,157 + GFF2322 0.76 -0.5 1,038,158 - GFF2322 0.76 -0.0 1,038,178 + GFF2322 0.77 +1.0 1,038,179 - GFF2322 0.77 +0.8 1,038,179 - GFF2322 0.77 -0.2 1,038,179 - GFF2322 0.77 -0.3 1,038,718 - GFF2323 0.41 +0.3 1,038,738 + GFF2323 0.44 +1.5 1,038,738 + GFF2323 0.44 -0.2 1,038,739 - GFF2323 0.44 -0.8 1,038,739 - GFF2323 0.44 -1.2 1,038,918 + GFF2323 0.71 +0.1 1,039,105 - +0.8 1,039,114 - +0.6 1,039,392 + GFF2324 0.86 +0.6
Or see this region's nucleotide sequence