Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF22 and GFF23 are separated by 259 nucleotides GFF23 and GFF24 are separated by 205 nucleotides
GFF22 - HTH-type transcriptional regulator HdfR, at 26,627 to 27,529
GFF22
GFF23 - Fosfomycin resistance protein AbaF, at 27,789 to 29,195
GFF23
GFF24 - FMNH(2)-dependent dimethylsulfone monooxygenase, at 29,401 to 30,564
GFF24
Position (kb) 27
28
29
30 Strain fitness (log2 ratio) -1
0
1 at 26.935 kb on - strand, within GFF22 at 26.935 kb on - strand, within GFF22 at 27.184 kb on - strand, within GFF22 at 27.255 kb on - strand, within GFF22 at 27.255 kb on - strand, within GFF22 at 27.255 kb on - strand, within GFF22 at 27.330 kb on + strand, within GFF22 at 27.330 kb on + strand, within GFF22 at 27.331 kb on - strand, within GFF22 at 27.513 kb on - strand at 27.513 kb on - strand at 27.513 kb on - strand at 27.513 kb on - strand at 27.610 kb on + strand at 27.906 kb on + strand at 27.907 kb on - strand at 27.907 kb on - strand at 27.942 kb on + strand, within GFF23 at 27.963 kb on + strand, within GFF23 at 28.134 kb on + strand, within GFF23 at 28.135 kb on - strand, within GFF23 at 28.136 kb on + strand, within GFF23 at 28.176 kb on + strand, within GFF23 at 28.428 kb on + strand, within GFF23 at 28.428 kb on + strand, within GFF23 at 28.429 kb on - strand, within GFF23 at 28.429 kb on - strand, within GFF23 at 28.429 kb on - strand, within GFF23 at 28.608 kb on + strand, within GFF23 at 28.705 kb on - strand, within GFF23 at 28.737 kb on + strand, within GFF23 at 28.737 kb on + strand, within GFF23 at 28.737 kb on + strand, within GFF23 at 28.737 kb on + strand, within GFF23 at 28.780 kb on - strand, within GFF23 at 28.780 kb on - strand, within GFF23 at 28.860 kb on + strand, within GFF23 at 28.860 kb on + strand, within GFF23 at 28.861 kb on - strand, within GFF23 at 28.932 kb on + strand, within GFF23 at 28.998 kb on + strand, within GFF23 at 29.026 kb on - strand, within GFF23 at 29.026 kb on - strand, within GFF23 at 29.094 kb on + strand at 29.094 kb on + strand at 29.094 kb on + strand at 29.633 kb on - strand, within GFF24 at 29.736 kb on + strand, within GFF24 at 29.744 kb on - strand, within GFF24 at 29.744 kb on - strand, within GFF24 at 29.833 kb on + strand, within GFF24 at 29.833 kb on + strand, within GFF24 at 29.890 kb on + strand, within GFF24 at 29.890 kb on + strand, within GFF24 at 29.890 kb on + strand, within GFF24 at 29.891 kb on - strand, within GFF24 at 30.062 kb on - strand, within GFF24 at 30.062 kb on - strand, within GFF24 at 30.147 kb on + strand, within GFF24
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 26,935 - GFF22 0.34 -0.3 26,935 - GFF22 0.34 +0.2 27,184 - GFF22 0.62 -0.0 27,255 - GFF22 0.70 -0.8 27,255 - GFF22 0.70 +0.6 27,255 - GFF22 0.70 -0.7 27,330 + GFF22 0.78 -0.7 27,330 + GFF22 0.78 -0.2 27,331 - GFF22 0.78 -0.7 27,513 - +0.3 27,513 - -0.4 27,513 - -0.3 27,513 - -0.4 27,610 + +0.1 27,906 + -0.2 27,907 - +0.1 27,907 - -0.0 27,942 + GFF23 0.11 +0.4 27,963 + GFF23 0.12 -0.7 28,134 + GFF23 0.25 -1.0 28,135 - GFF23 0.25 +0.1 28,136 + GFF23 0.25 -0.2 28,176 + GFF23 0.28 +0.1 28,428 + GFF23 0.45 -0.9 28,428 + GFF23 0.45 -0.1 28,429 - GFF23 0.45 +0.8 28,429 - GFF23 0.45 -1.5 28,429 - GFF23 0.45 -0.0 28,608 + GFF23 0.58 -0.5 28,705 - GFF23 0.65 -0.7 28,737 + GFF23 0.67 -1.1 28,737 + GFF23 0.67 -0.1 28,737 + GFF23 0.67 +0.0 28,737 + GFF23 0.67 +0.4 28,780 - GFF23 0.70 +0.7 28,780 - GFF23 0.70 -0.1 28,860 + GFF23 0.76 -0.5 28,860 + GFF23 0.76 +0.3 28,861 - GFF23 0.76 +0.9 28,932 + GFF23 0.81 +0.3 28,998 + GFF23 0.86 -0.1 29,026 - GFF23 0.88 -0.6 29,026 - GFF23 0.88 -0.3 29,094 + +0.5 29,094 + +0.3 29,094 + -1.1 29,633 - GFF24 0.20 -0.8 29,736 + GFF24 0.29 +0.5 29,744 - GFF24 0.29 -0.9 29,744 - GFF24 0.29 -1.2 29,833 + GFF24 0.37 +0.1 29,833 + GFF24 0.37 +0.6 29,890 + GFF24 0.42 -0.4 29,890 + GFF24 0.42 +0.9 29,890 + GFF24 0.42 -0.3 29,891 - GFF24 0.42 -0.1 30,062 - GFF24 0.57 -0.1 30,062 - GFF24 0.57 +0.1 30,147 + GFF24 0.64 -0.6
Or see this region's nucleotide sequence