Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2278 and GFF2279 are separated by 204 nucleotides GFF2279 and GFF2280 are separated by 158 nucleotides
GFF2278 - (2S)-methylsuccinyl-CoA dehydrogenase, at 985,451 to 987,142
GFF2278
GFF2279 - hypothetical protein, at 987,347 to 988,549
GFF2279
GFF2280 - hypothetical protein, at 988,708 to 989,580
GFF2280
Position (kb) 987
988
989 Strain fitness (log2 ratio) -2
-1
0
1 at 986.387 kb on - strand, within GFF2278 at 986.387 kb on - strand, within GFF2278 at 986.389 kb on - strand, within GFF2278 at 986.521 kb on - strand, within GFF2278 at 986.635 kb on + strand, within GFF2278 at 986.636 kb on - strand, within GFF2278 at 986.636 kb on - strand, within GFF2278 at 986.693 kb on - strand, within GFF2278 at 986.763 kb on + strand, within GFF2278 at 986.764 kb on - strand, within GFF2278 at 986.904 kb on + strand, within GFF2278 at 986.904 kb on + strand, within GFF2278 at 986.934 kb on + strand, within GFF2278 at 987.180 kb on + strand at 987.180 kb on + strand at 987.181 kb on - strand at 987.283 kb on + strand at 987.284 kb on - strand at 987.933 kb on + strand, within GFF2279 at 988.314 kb on + strand, within GFF2279 at 988.315 kb on - strand, within GFF2279 at 988.315 kb on - strand, within GFF2279 at 988.350 kb on + strand, within GFF2279 at 988.351 kb on - strand, within GFF2279 at 988.351 kb on - strand, within GFF2279 at 988.724 kb on - strand at 988.724 kb on - strand at 988.946 kb on - strand, within GFF2280 at 988.946 kb on - strand, within GFF2280 at 989.009 kb on + strand, within GFF2280 at 989.056 kb on + strand, within GFF2280 at 989.057 kb on - strand, within GFF2280 at 989.057 kb on - strand, within GFF2280 at 989.057 kb on - strand, within GFF2280 at 989.110 kb on + strand, within GFF2280 at 989.111 kb on - strand, within GFF2280 at 989.389 kb on + strand, within GFF2280 at 989.389 kb on + strand, within GFF2280 at 989.413 kb on + strand, within GFF2280 at 989.414 kb on - strand, within GFF2280 at 989.414 kb on - strand, within GFF2280 at 989.414 kb on - strand, within GFF2280 at 989.425 kb on + strand, within GFF2280 at 989.425 kb on + strand, within GFF2280 at 989.425 kb on + strand, within GFF2280 at 989.426 kb on - strand, within GFF2280
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 986,387 - GFF2278 0.55 +0.9 986,387 - GFF2278 0.55 -0.8 986,389 - GFF2278 0.55 -0.8 986,521 - GFF2278 0.63 +0.4 986,635 + GFF2278 0.70 -2.1 986,636 - GFF2278 0.70 +0.9 986,636 - GFF2278 0.70 +0.5 986,693 - GFF2278 0.73 -0.0 986,763 + GFF2278 0.78 +0.5 986,764 - GFF2278 0.78 +0.4 986,904 + GFF2278 0.86 +0.5 986,904 + GFF2278 0.86 -0.6 986,934 + GFF2278 0.88 -0.1 987,180 + +0.0 987,180 + +0.5 987,181 - +0.9 987,283 + +1.5 987,284 - -0.9 987,933 + GFF2279 0.49 +0.8 988,314 + GFF2279 0.80 +0.4 988,315 - GFF2279 0.80 -0.2 988,315 - GFF2279 0.80 -0.1 988,350 + GFF2279 0.83 -0.4 988,351 - GFF2279 0.83 +0.3 988,351 - GFF2279 0.83 +0.3 988,724 - -0.7 988,724 - -0.3 988,946 - GFF2280 0.27 +0.3 988,946 - GFF2280 0.27 -1.1 989,009 + GFF2280 0.34 +0.0 989,056 + GFF2280 0.40 +0.2 989,057 - GFF2280 0.40 +0.4 989,057 - GFF2280 0.40 +1.7 989,057 - GFF2280 0.40 -0.6 989,110 + GFF2280 0.46 +0.3 989,111 - GFF2280 0.46 -0.4 989,389 + GFF2280 0.78 +0.2 989,389 + GFF2280 0.78 +0.3 989,413 + GFF2280 0.81 +0.1 989,414 - GFF2280 0.81 -0.1 989,414 - GFF2280 0.81 -0.1 989,414 - GFF2280 0.81 +0.1 989,425 + GFF2280 0.82 -0.1 989,425 + GFF2280 0.82 +1.4 989,425 + GFF2280 0.82 -0.5 989,426 - GFF2280 0.82 +0.0
Or see this region's nucleotide sequence