Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2259 and GFF2260 are separated by 122 nucleotides GFF2260 and GFF2261 are separated by 9 nucleotides GFF2261 and GFF2262 are separated by 152 nucleotides
GFF2259 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 965,908 to 966,867
GFF2259
GFF2260 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 966,990 to 967,652
GFF2260
GFF2261 - HTH-type transcriptional regulator DmlR, at 967,662 to 968,582
GFF2261
GFF2262 - Acetyl esterase, at 968,735 to 969,577
GFF2262
Position (kb) 967
968
969 Strain fitness (log2 ratio) -1
0
1
2 at 967.307 kb on + strand, within GFF2260 at 967.307 kb on + strand, within GFF2260 at 967.307 kb on + strand, within GFF2260 at 967.308 kb on - strand, within GFF2260 at 967.389 kb on + strand, within GFF2260 at 967.389 kb on + strand, within GFF2260 at 967.389 kb on + strand, within GFF2260 at 967.390 kb on - strand, within GFF2260 at 967.390 kb on - strand, within GFF2260 at 967.398 kb on + strand, within GFF2260 at 967.521 kb on + strand, within GFF2260 at 967.521 kb on + strand, within GFF2260 at 967.521 kb on + strand, within GFF2260 at 967.522 kb on - strand, within GFF2260 at 967.651 kb on - strand at 967.682 kb on + strand at 967.763 kb on - strand, within GFF2261 at 967.897 kb on + strand, within GFF2261 at 967.898 kb on - strand, within GFF2261 at 967.898 kb on - strand, within GFF2261 at 967.927 kb on + strand, within GFF2261 at 967.964 kb on + strand, within GFF2261 at 967.981 kb on + strand, within GFF2261 at 968.071 kb on + strand, within GFF2261 at 968.072 kb on - strand, within GFF2261 at 968.072 kb on - strand, within GFF2261 at 968.085 kb on + strand, within GFF2261 at 968.386 kb on + strand, within GFF2261 at 968.386 kb on + strand, within GFF2261 at 968.387 kb on - strand, within GFF2261 at 968.389 kb on + strand, within GFF2261 at 968.645 kb on + strand at 968.656 kb on - strand at 968.667 kb on - strand at 968.798 kb on + strand at 968.798 kb on + strand at 968.799 kb on - strand at 968.880 kb on - strand, within GFF2262 at 968.889 kb on - strand, within GFF2262 at 968.889 kb on - strand, within GFF2262 at 968.891 kb on - strand, within GFF2262 at 968.891 kb on - strand, within GFF2262 at 968.891 kb on - strand, within GFF2262 at 968.891 kb on - strand, within GFF2262 at 969.008 kb on + strand, within GFF2262 at 969.051 kb on - strand, within GFF2262 at 969.243 kb on - strand, within GFF2262 at 969.276 kb on - strand, within GFF2262 at 969.419 kb on - strand, within GFF2262 at 969.449 kb on - strand, within GFF2262 at 969.449 kb on - strand, within GFF2262 at 969.449 kb on - strand, within GFF2262
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 967,307 + GFF2260 0.48 +0.0 967,307 + GFF2260 0.48 +1.5 967,307 + GFF2260 0.48 +0.2 967,308 - GFF2260 0.48 +0.0 967,389 + GFF2260 0.60 +0.3 967,389 + GFF2260 0.60 -0.3 967,389 + GFF2260 0.60 +0.0 967,390 - GFF2260 0.60 -0.4 967,390 - GFF2260 0.60 +0.1 967,398 + GFF2260 0.62 +1.1 967,521 + GFF2260 0.80 -0.4 967,521 + GFF2260 0.80 +0.9 967,521 + GFF2260 0.80 +0.5 967,522 - GFF2260 0.80 +0.0 967,651 - +1.0 967,682 + +0.9 967,763 - GFF2261 0.11 -0.0 967,897 + GFF2261 0.26 +0.5 967,898 - GFF2261 0.26 -0.3 967,898 - GFF2261 0.26 -0.2 967,927 + GFF2261 0.29 +0.3 967,964 + GFF2261 0.33 +0.3 967,981 + GFF2261 0.35 -0.1 968,071 + GFF2261 0.44 -0.7 968,072 - GFF2261 0.45 -0.5 968,072 - GFF2261 0.45 +1.9 968,085 + GFF2261 0.46 +0.7 968,386 + GFF2261 0.79 -1.6 968,386 + GFF2261 0.79 +1.3 968,387 - GFF2261 0.79 +0.3 968,389 + GFF2261 0.79 +0.1 968,645 + +0.1 968,656 - +0.6 968,667 - -1.1 968,798 + -0.4 968,798 + +0.5 968,799 - +0.3 968,880 - GFF2262 0.17 -1.5 968,889 - GFF2262 0.18 +0.5 968,889 - GFF2262 0.18 -0.1 968,891 - GFF2262 0.19 -0.8 968,891 - GFF2262 0.19 -0.6 968,891 - GFF2262 0.19 -0.5 968,891 - GFF2262 0.19 -0.7 969,008 + GFF2262 0.32 -1.0 969,051 - GFF2262 0.37 +0.5 969,243 - GFF2262 0.60 +0.9 969,276 - GFF2262 0.64 +0.1 969,419 - GFF2262 0.81 -0.2 969,449 - GFF2262 0.85 -0.1 969,449 - GFF2262 0.85 -0.6 969,449 - GFF2262 0.85 +0.7
Or see this region's nucleotide sequence