Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2238 and GFF2239 are separated by 69 nucleotides GFF2239 and GFF2240 overlap by 4 nucleotides
GFF2238 - hypothetical protein, at 941,144 to 942,094
GFF2238
GFF2239 - Signal transduction histidine-protein kinase AtoS, at 942,164 to 943,561
GFF2239
GFF2240 - Periplasmic [NiFeSe] hydrogenase small subunit, at 943,558 to 944,568
GFF2240
Position (kb) 942
943
944 Strain fitness (log2 ratio) -1
0
1 at 941.366 kb on + strand, within GFF2238 at 941.367 kb on - strand, within GFF2238 at 941.367 kb on - strand, within GFF2238 at 942.002 kb on + strand at 942.050 kb on + strand at 942.050 kb on + strand at 942.050 kb on + strand at 942.051 kb on - strand at 942.051 kb on - strand at 942.113 kb on - strand at 942.127 kb on + strand at 942.127 kb on + strand at 942.127 kb on + strand at 942.127 kb on + strand at 942.128 kb on - strand at 942.128 kb on - strand at 942.317 kb on + strand, within GFF2239 at 942.317 kb on + strand, within GFF2239 at 942.317 kb on + strand, within GFF2239 at 942.342 kb on + strand, within GFF2239 at 942.343 kb on - strand, within GFF2239 at 942.735 kb on - strand, within GFF2239 at 942.735 kb on - strand, within GFF2239 at 942.918 kb on - strand, within GFF2239 at 943.229 kb on - strand, within GFF2239 at 943.466 kb on + strand at 943.466 kb on + strand at 943.466 kb on + strand at 943.796 kb on + strand, within GFF2240 at 943.827 kb on + strand, within GFF2240 at 943.827 kb on + strand, within GFF2240 at 943.827 kb on + strand, within GFF2240 at 943.921 kb on + strand, within GFF2240 at 943.975 kb on + strand, within GFF2240 at 943.976 kb on - strand, within GFF2240 at 944.137 kb on + strand, within GFF2240 at 944.155 kb on + strand, within GFF2240 at 944.156 kb on - strand, within GFF2240 at 944.200 kb on + strand, within GFF2240 at 944.206 kb on + strand, within GFF2240 at 944.207 kb on - strand, within GFF2240
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 941,366 + GFF2238 0.23 +0.2 941,367 - GFF2238 0.23 -0.6 941,367 - GFF2238 0.23 +1.0 942,002 + -0.7 942,050 + +1.2 942,050 + -1.0 942,050 + -0.1 942,051 - +1.1 942,051 - -0.9 942,113 - -0.0 942,127 + -0.7 942,127 + -0.2 942,127 + +0.3 942,127 + -0.4 942,128 - -0.4 942,128 - +0.7 942,317 + GFF2239 0.11 +0.3 942,317 + GFF2239 0.11 +0.5 942,317 + GFF2239 0.11 -1.6 942,342 + GFF2239 0.13 +0.0 942,343 - GFF2239 0.13 +0.6 942,735 - GFF2239 0.41 +0.4 942,735 - GFF2239 0.41 +1.0 942,918 - GFF2239 0.54 -0.2 943,229 - GFF2239 0.76 -0.7 943,466 + +0.9 943,466 + +0.3 943,466 + -0.6 943,796 + GFF2240 0.24 -0.1 943,827 + GFF2240 0.27 +0.1 943,827 + GFF2240 0.27 +0.0 943,827 + GFF2240 0.27 +0.4 943,921 + GFF2240 0.36 -0.2 943,975 + GFF2240 0.41 -0.3 943,976 - GFF2240 0.41 -0.9 944,137 + GFF2240 0.57 +1.6 944,155 + GFF2240 0.59 +0.3 944,156 - GFF2240 0.59 +0.3 944,200 + GFF2240 0.64 -0.1 944,206 + GFF2240 0.64 -0.4 944,207 - GFF2240 0.64 +0.3
Or see this region's nucleotide sequence