Strain Fitness in Xanthobacter sp. DMC5 around GFF2210

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2208 and GFF2209 are separated by 67 nucleotidesGFF2209 and GFF2210 overlap by 1 nucleotidesGFF2210 and GFF2211 are separated by 495 nucleotidesGFF2211 and GFF2212 are separated by 10 nucleotides GFF2208 - hypothetical protein, at 911,390 to 911,617 GFF2208 GFF2209 - hypothetical protein, at 911,685 to 912,266 GFF2209 GFF2210 - hypothetical protein, at 912,266 to 914,833 GFF2210 GFF2211 - hypothetical protein, at 915,329 to 915,697 GFF2211 GFF2212 - hypothetical protein, at 915,708 to 915,950 GFF2212 Position (kb) 912 913 914 915Strain fitness (log2 ratio) -1 0 1at 911.354 kb on + strandat 911.354 kb on + strandat 911.390 kb on - strandat 911.390 kb on - strandat 911.390 kb on - strandat 911.469 kb on + strand, within GFF2208at 911.469 kb on + strand, within GFF2208at 911.469 kb on + strand, within GFF2208at 911.694 kb on - strandat 912.007 kb on + strand, within GFF2209at 912.030 kb on + strand, within GFF2209at 912.031 kb on - strand, within GFF2209at 912.031 kb on - strand, within GFF2209at 912.148 kb on + strand, within GFF2209at 912.148 kb on + strand, within GFF2209at 912.148 kb on + strand, within GFF2209at 912.149 kb on - strand, within GFF2209at 912.149 kb on - strand, within GFF2209at 912.474 kb on + strandat 912.474 kb on + strandat 912.474 kb on + strandat 912.474 kb on + strandat 912.475 kb on - strandat 912.475 kb on - strandat 912.475 kb on - strandat 912.475 kb on - strandat 912.475 kb on - strandat 912.526 kb on + strand, within GFF2210at 912.526 kb on + strand, within GFF2210at 912.526 kb on + strand, within GFF2210at 912.527 kb on - strand, within GFF2210at 912.547 kb on - strand, within GFF2210at 912.580 kb on + strand, within GFF2210at 912.580 kb on + strand, within GFF2210at 912.580 kb on + strand, within GFF2210at 912.581 kb on - strand, within GFF2210at 912.581 kb on - strand, within GFF2210at 912.589 kb on + strand, within GFF2210at 912.590 kb on - strand, within GFF2210at 912.614 kb on + strand, within GFF2210at 912.614 kb on + strand, within GFF2210at 912.615 kb on - strand, within GFF2210at 912.615 kb on - strand, within GFF2210at 912.690 kb on - strand, within GFF2210at 912.710 kb on + strand, within GFF2210at 912.710 kb on + strand, within GFF2210at 912.749 kb on + strand, within GFF2210at 912.749 kb on + strand, within GFF2210at 912.749 kb on + strand, within GFF2210at 912.749 kb on + strand, within GFF2210at 912.749 kb on + strand, within GFF2210at 912.750 kb on - strand, within GFF2210at 912.750 kb on - strand, within GFF2210at 912.750 kb on - strand, within GFF2210at 912.750 kb on - strand, within GFF2210at 912.847 kb on - strand, within GFF2210at 912.847 kb on - strand, within GFF2210at 912.847 kb on - strand, within GFF2210at 912.847 kb on - strand, within GFF2210at 912.861 kb on + strand, within GFF2210at 912.862 kb on - strand, within GFF2210at 912.868 kb on + strand, within GFF2210at 912.868 kb on + strand, within GFF2210at 912.868 kb on + strand, within GFF2210at 912.869 kb on - strand, within GFF2210at 912.918 kb on + strand, within GFF2210at 912.918 kb on + strand, within GFF2210at 912.918 kb on + strand, within GFF2210at 912.918 kb on + strand, within GFF2210at 912.919 kb on - strand, within GFF2210at 912.919 kb on - strand, within GFF2210at 912.919 kb on - strand, within GFF2210at 912.919 kb on - strand, within GFF2210at 912.919 kb on - strand, within GFF2210at 912.919 kb on - strand, within GFF2210at 913.024 kb on + strand, within GFF2210at 913.024 kb on + strand, within GFF2210at 913.024 kb on + strand, within GFF2210at 913.025 kb on - strand, within GFF2210at 913.125 kb on + strand, within GFF2210at 913.126 kb on - strand, within GFF2210at 913.359 kb on + strand, within GFF2210at 913.468 kb on + strand, within GFF2210at 913.468 kb on + strand, within GFF2210at 913.469 kb on - strand, within GFF2210at 913.670 kb on + strand, within GFF2210at 913.691 kb on + strand, within GFF2210at 913.691 kb on + strand, within GFF2210at 913.691 kb on + strand, within GFF2210at 913.691 kb on + strand, within GFF2210at 913.691 kb on + strand, within GFF2210at 913.691 kb on + strand, within GFF2210at 913.691 kb on + strand, within GFF2210at 913.692 kb on - strand, within GFF2210at 913.692 kb on - strand, within GFF2210at 914.068 kb on - strand, within GFF2210at 914.068 kb on - strand, within GFF2210at 914.068 kb on - strand, within GFF2210at 914.254 kb on + strand, within GFF2210at 914.254 kb on + strand, within GFF2210at 914.254 kb on + strand, within GFF2210at 914.254 kb on + strand, within GFF2210at 914.254 kb on + strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.365 kb on + strand, within GFF2210at 914.365 kb on + strand, within GFF2210at 914.365 kb on + strand, within GFF2210at 914.537 kb on + strand, within GFF2210at 914.538 kb on - strand, within GFF2210at 914.538 kb on - strand, within GFF2210at 914.666 kb on + strandat 914.666 kb on + strandat 914.728 kb on - strandat 914.752 kb on - strandat 914.752 kb on - strandat 914.796 kb on + strandat 914.797 kb on - strandat 914.873 kb on + strandat 914.873 kb on + strandat 914.874 kb on - strandat 914.874 kb on - strandat 914.934 kb on + strandat 915.068 kb on + strandat 915.075 kb on - strandat 915.148 kb on - strandat 915.293 kb on + strandat 915.293 kb on + strandat 915.293 kb on + strandat 915.294 kb on - strandat 915.294 kb on - strandat 915.346 kb on - strandat 915.346 kb on - strandat 915.359 kb on + strandat 915.359 kb on + strandat 915.359 kb on + strandat 915.360 kb on - strandat 915.360 kb on - strandat 915.683 kb on - strandat 915.694 kb on - strandat 915.698 kb on - strandat 915.745 kb on + strand, within GFF2212

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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911,354 + -0.6
911,354 + -0.5
911,390 - +0.3
911,390 - +0.1
911,390 - -0.5
911,469 + GFF2208 0.35 -0.3
911,469 + GFF2208 0.35 -0.0
911,469 + GFF2208 0.35 +1.2
911,694 - -0.2
912,007 + GFF2209 0.55 +0.8
912,030 + GFF2209 0.59 +0.6
912,031 - GFF2209 0.59 -0.0
912,031 - GFF2209 0.59 +0.7
912,148 + GFF2209 0.80 -0.1
912,148 + GFF2209 0.80 -0.2
912,148 + GFF2209 0.80 +0.1
912,149 - GFF2209 0.80 -0.6
912,149 - GFF2209 0.80 -0.1
912,474 + -0.0
912,474 + +0.9
912,474 + -0.1
912,474 + +0.8
912,475 - +0.1
912,475 - +1.1
912,475 - +0.9
912,475 - -0.6
912,475 - -0.4
912,526 + GFF2210 0.10 +0.6
912,526 + GFF2210 0.10 -1.3
912,526 + GFF2210 0.10 -0.0
912,527 - GFF2210 0.10 -0.2
912,547 - GFF2210 0.11 +0.5
912,580 + GFF2210 0.12 -0.8
912,580 + GFF2210 0.12 -0.5
912,580 + GFF2210 0.12 +0.1
912,581 - GFF2210 0.12 -0.0
912,581 - GFF2210 0.12 +1.4
912,589 + GFF2210 0.13 +0.8
912,590 - GFF2210 0.13 +1.1
912,614 + GFF2210 0.14 -0.2
912,614 + GFF2210 0.14 -0.3
912,615 - GFF2210 0.14 -0.5
912,615 - GFF2210 0.14 +0.1
912,690 - GFF2210 0.17 -0.4
912,710 + GFF2210 0.17 +0.3
912,710 + GFF2210 0.17 -0.6
912,749 + GFF2210 0.19 +0.8
912,749 + GFF2210 0.19 -1.7
912,749 + GFF2210 0.19 +0.1
912,749 + GFF2210 0.19 +1.1
912,749 + GFF2210 0.19 +0.6
912,750 - GFF2210 0.19 +0.1
912,750 - GFF2210 0.19 +0.3
912,750 - GFF2210 0.19 -0.3
912,750 - GFF2210 0.19 +0.1
912,847 - GFF2210 0.23 -0.1
912,847 - GFF2210 0.23 +0.4
912,847 - GFF2210 0.23 -0.1
912,847 - GFF2210 0.23 -0.1
912,861 + GFF2210 0.23 +0.5
912,862 - GFF2210 0.23 -0.3
912,868 + GFF2210 0.23 +0.1
912,868 + GFF2210 0.23 -0.1
912,868 + GFF2210 0.23 +0.6
912,869 - GFF2210 0.23 -0.8
912,918 + GFF2210 0.25 +0.0
912,918 + GFF2210 0.25 +0.1
912,918 + GFF2210 0.25 +0.1
912,918 + GFF2210 0.25 -0.4
912,919 - GFF2210 0.25 +0.3
912,919 - GFF2210 0.25 -0.3
912,919 - GFF2210 0.25 +0.1
912,919 - GFF2210 0.25 +0.5
912,919 - GFF2210 0.25 -0.0
912,919 - GFF2210 0.25 +0.2
913,024 + GFF2210 0.30 -0.1
913,024 + GFF2210 0.30 -0.3
913,024 + GFF2210 0.30 -0.2
913,025 - GFF2210 0.30 +0.3
913,125 + GFF2210 0.33 +0.4
913,126 - GFF2210 0.33 -0.6
913,359 + GFF2210 0.43 +0.1
913,468 + GFF2210 0.47 +0.3
913,468 + GFF2210 0.47 -1.3
913,469 - GFF2210 0.47 +0.1
913,670 + GFF2210 0.55 -0.4
913,691 + GFF2210 0.55 +0.6
913,691 + GFF2210 0.55 +0.6
913,691 + GFF2210 0.55 -0.3
913,691 + GFF2210 0.55 +0.6
913,691 + GFF2210 0.55 -0.9
913,691 + GFF2210 0.55 -0.1
913,691 + GFF2210 0.55 +0.7
913,692 - GFF2210 0.56 -0.7
913,692 - GFF2210 0.56 -1.0
914,068 - GFF2210 0.70 +0.4
914,068 - GFF2210 0.70 +0.4
914,068 - GFF2210 0.70 +0.5
914,254 + GFF2210 0.77 -0.8
914,254 + GFF2210 0.77 -0.1
914,254 + GFF2210 0.77 -0.2
914,254 + GFF2210 0.77 -1.0
914,254 + GFF2210 0.77 -1.1
914,255 - GFF2210 0.77 +0.4
914,255 - GFF2210 0.77 +0.2
914,255 - GFF2210 0.77 -0.2
914,255 - GFF2210 0.77 -0.5
914,255 - GFF2210 0.77 -0.6
914,255 - GFF2210 0.77 -1.1
914,255 - GFF2210 0.77 -0.4
914,255 - GFF2210 0.77 -0.5
914,255 - GFF2210 0.77 +0.4
914,255 - GFF2210 0.77 -0.5
914,365 + GFF2210 0.82 +0.3
914,365 + GFF2210 0.82 +0.5
914,365 + GFF2210 0.82 +0.2
914,537 + GFF2210 0.88 -0.1
914,538 - GFF2210 0.88 +0.7
914,538 - GFF2210 0.88 -0.2
914,666 + +0.0
914,666 + -0.2
914,728 - +0.3
914,752 - +0.8
914,752 - -0.1
914,796 + -0.2
914,797 - -1.6
914,873 + -0.3
914,873 + +0.3
914,874 - -0.1
914,874 - -0.1
914,934 + +0.4
915,068 + -0.6
915,075 - +0.5
915,148 - -0.7
915,293 + -0.6
915,293 + +0.9
915,293 + -0.1
915,294 - +0.0
915,294 - +0.1
915,346 - +0.1
915,346 - +0.9
915,359 + +0.1
915,359 + -0.3
915,359 + -0.1
915,360 - +0.1
915,360 - +0.1
915,683 - +0.3
915,694 - -0.2
915,698 - -0.1
915,745 + GFF2212 0.15 +1.3

Or see this region's nucleotide sequence