Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2174 and GFF2175 are separated by 144 nucleotides GFF2175 and GFF2176 are separated by 107 nucleotides
GFF2174 - Colistin resistance protein EmrA, at 873,265 to 874,515
GFF2174
GFF2175 - hypothetical protein, at 874,660 to 875,343
GFF2175
GFF2176 - L-lactate dehydrogenase, at 875,451 to 876,626
GFF2176
Position (kb) 874
875
876 Strain fitness (log2 ratio) -2
-1
0
1 at 873.886 kb on + strand, within GFF2174 at 874.101 kb on - strand, within GFF2174 at 874.101 kb on - strand, within GFF2174 at 874.101 kb on - strand, within GFF2174 at 874.179 kb on - strand, within GFF2174 at 874.223 kb on + strand, within GFF2174 at 874.224 kb on - strand, within GFF2174 at 874.224 kb on - strand, within GFF2174 at 874.224 kb on - strand, within GFF2174 at 874.277 kb on + strand, within GFF2174 at 874.277 kb on + strand, within GFF2174 at 874.576 kb on + strand at 874.578 kb on + strand at 874.731 kb on + strand, within GFF2175 at 874.731 kb on + strand, within GFF2175 at 874.855 kb on + strand, within GFF2175 at 874.855 kb on + strand, within GFF2175 at 874.855 kb on + strand, within GFF2175 at 874.855 kb on + strand, within GFF2175 at 874.855 kb on + strand, within GFF2175 at 874.855 kb on + strand, within GFF2175 at 874.855 kb on + strand, within GFF2175 at 874.855 kb on + strand, within GFF2175 at 874.856 kb on - strand, within GFF2175 at 874.856 kb on - strand, within GFF2175 at 874.856 kb on - strand, within GFF2175 at 874.856 kb on - strand, within GFF2175 at 874.856 kb on - strand, within GFF2175 at 874.856 kb on - strand, within GFF2175 at 874.856 kb on - strand, within GFF2175 at 875.433 kb on + strand at 875.626 kb on + strand, within GFF2176 at 875.627 kb on - strand, within GFF2176 at 875.968 kb on + strand, within GFF2176 at 875.968 kb on + strand, within GFF2176 at 875.968 kb on + strand, within GFF2176 at 875.968 kb on + strand, within GFF2176 at 875.968 kb on + strand, within GFF2176 at 875.969 kb on - strand, within GFF2176 at 875.969 kb on - strand, within GFF2176 at 875.969 kb on - strand, within GFF2176 at 875.969 kb on - strand, within GFF2176 at 876.049 kb on + strand, within GFF2176 at 876.049 kb on + strand, within GFF2176 at 876.241 kb on + strand, within GFF2176 at 876.242 kb on - strand, within GFF2176 at 876.242 kb on - strand, within GFF2176 at 876.242 kb on - strand, within GFF2176 at 876.242 kb on - strand, within GFF2176
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 873,886 + GFF2174 0.50 -1.0 874,101 - GFF2174 0.67 -0.4 874,101 - GFF2174 0.67 -0.3 874,101 - GFF2174 0.67 -0.3 874,179 - GFF2174 0.73 +0.5 874,223 + GFF2174 0.77 -0.6 874,224 - GFF2174 0.77 +0.4 874,224 - GFF2174 0.77 -0.2 874,224 - GFF2174 0.77 -1.1 874,277 + GFF2174 0.81 +0.1 874,277 + GFF2174 0.81 -0.3 874,576 + +0.3 874,578 + -0.5 874,731 + GFF2175 0.10 -2.1 874,731 + GFF2175 0.10 -0.1 874,855 + GFF2175 0.29 +0.7 874,855 + GFF2175 0.29 +0.4 874,855 + GFF2175 0.29 +1.0 874,855 + GFF2175 0.29 +1.3 874,855 + GFF2175 0.29 -0.1 874,855 + GFF2175 0.29 -0.0 874,855 + GFF2175 0.29 -0.2 874,855 + GFF2175 0.29 +0.6 874,856 - GFF2175 0.29 +0.5 874,856 - GFF2175 0.29 -0.0 874,856 - GFF2175 0.29 +0.5 874,856 - GFF2175 0.29 -0.4 874,856 - GFF2175 0.29 -0.9 874,856 - GFF2175 0.29 +1.3 874,856 - GFF2175 0.29 +0.9 875,433 + -0.9 875,626 + GFF2176 0.15 +0.6 875,627 - GFF2176 0.15 -0.2 875,968 + GFF2176 0.44 -0.1 875,968 + GFF2176 0.44 -0.4 875,968 + GFF2176 0.44 +0.0 875,968 + GFF2176 0.44 +0.3 875,968 + GFF2176 0.44 -0.7 875,969 - GFF2176 0.44 +0.1 875,969 - GFF2176 0.44 -0.5 875,969 - GFF2176 0.44 -0.7 875,969 - GFF2176 0.44 -0.2 876,049 + GFF2176 0.51 -0.3 876,049 + GFF2176 0.51 +0.3 876,241 + GFF2176 0.67 -0.5 876,242 - GFF2176 0.67 +1.1 876,242 - GFF2176 0.67 -0.0 876,242 - GFF2176 0.67 +0.6 876,242 - GFF2176 0.67 +0.6
Or see this region's nucleotide sequence