Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2163 and GFF2164 overlap by 4 nucleotides GFF2164 and GFF2165 are separated by 15 nucleotides
GFF2163 - Toluene efflux pump outer membrane protein TtgI, at 857,633 to 859,213
GFF2163
GFF2164 - Macrolide export protein MacA, at 859,210 to 860,502
GFF2164
GFF2165 - Macrolide export ATP-binding/permease protein MacB, at 860,518 to 862,533
GFF2165
Position (kb) 859
860
861 Strain fitness (log2 ratio) -2
-1
0
1
2 at 858.239 kb on + strand, within GFF2163 at 858.239 kb on + strand, within GFF2163 at 858.239 kb on + strand, within GFF2163 at 858.239 kb on + strand, within GFF2163 at 858.239 kb on + strand, within GFF2163 at 858.240 kb on - strand, within GFF2163 at 858.240 kb on - strand, within GFF2163 at 858.240 kb on - strand, within GFF2163 at 858.242 kb on + strand, within GFF2163 at 858.242 kb on + strand, within GFF2163 at 858.243 kb on - strand, within GFF2163 at 858.965 kb on + strand, within GFF2163 at 858.966 kb on - strand, within GFF2163 at 859.020 kb on - strand, within GFF2163 at 859.070 kb on + strand at 859.070 kb on + strand at 859.346 kb on - strand, within GFF2164 at 859.354 kb on + strand, within GFF2164 at 859.354 kb on + strand, within GFF2164 at 859.354 kb on + strand, within GFF2164 at 859.606 kb on - strand, within GFF2164 at 860.041 kb on + strand, within GFF2164 at 860.041 kb on + strand, within GFF2164 at 860.041 kb on + strand, within GFF2164 at 860.042 kb on - strand, within GFF2164 at 860.042 kb on - strand, within GFF2164 at 860.042 kb on - strand, within GFF2164 at 860.042 kb on - strand, within GFF2164 at 860.161 kb on + strand, within GFF2164 at 860.161 kb on + strand, within GFF2164 at 860.162 kb on - strand, within GFF2164 at 860.164 kb on + strand, within GFF2164 at 860.165 kb on - strand, within GFF2164 at 860.165 kb on - strand, within GFF2164 at 860.212 kb on + strand, within GFF2164 at 860.212 kb on + strand, within GFF2164 at 860.212 kb on + strand, within GFF2164 at 860.212 kb on + strand, within GFF2164 at 860.212 kb on + strand, within GFF2164 at 860.212 kb on + strand, within GFF2164 at 860.213 kb on - strand, within GFF2164 at 860.213 kb on - strand, within GFF2164 at 860.213 kb on - strand, within GFF2164 at 860.213 kb on - strand, within GFF2164 at 860.213 kb on - strand, within GFF2164 at 860.500 kb on + strand at 860.500 kb on + strand at 860.501 kb on - strand at 860.501 kb on - strand at 860.501 kb on - strand at 860.501 kb on - strand at 860.764 kb on + strand, within GFF2165 at 860.908 kb on + strand, within GFF2165
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 858,239 + GFF2163 0.38 -0.9 858,239 + GFF2163 0.38 +1.6 858,239 + GFF2163 0.38 -0.6 858,239 + GFF2163 0.38 -0.2 858,239 + GFF2163 0.38 +0.1 858,240 - GFF2163 0.38 +0.2 858,240 - GFF2163 0.38 -0.4 858,240 - GFF2163 0.38 +0.4 858,242 + GFF2163 0.39 -0.3 858,242 + GFF2163 0.39 -0.6 858,243 - GFF2163 0.39 -0.7 858,965 + GFF2163 0.84 -0.6 858,966 - GFF2163 0.84 -0.1 859,020 - GFF2163 0.88 -1.4 859,070 + -0.3 859,070 + +0.3 859,346 - GFF2164 0.11 -0.1 859,354 + GFF2164 0.11 +0.1 859,354 + GFF2164 0.11 +0.1 859,354 + GFF2164 0.11 +0.4 859,606 - GFF2164 0.31 +0.3 860,041 + GFF2164 0.64 -2.3 860,041 + GFF2164 0.64 -0.6 860,041 + GFF2164 0.64 +0.2 860,042 - GFF2164 0.64 -0.2 860,042 - GFF2164 0.64 +0.9 860,042 - GFF2164 0.64 +0.3 860,042 - GFF2164 0.64 +0.4 860,161 + GFF2164 0.74 +0.4 860,161 + GFF2164 0.74 +0.8 860,162 - GFF2164 0.74 -0.8 860,164 + GFF2164 0.74 -0.4 860,165 - GFF2164 0.74 +1.4 860,165 - GFF2164 0.74 +0.5 860,212 + GFF2164 0.77 +1.8 860,212 + GFF2164 0.77 +0.1 860,212 + GFF2164 0.77 -1.0 860,212 + GFF2164 0.77 -0.1 860,212 + GFF2164 0.77 +0.2 860,212 + GFF2164 0.77 -0.1 860,213 - GFF2164 0.78 +0.2 860,213 - GFF2164 0.78 -0.9 860,213 - GFF2164 0.78 -0.6 860,213 - GFF2164 0.78 +0.2 860,213 - GFF2164 0.78 +0.6 860,500 + -0.4 860,500 + +0.4 860,501 - +0.2 860,501 - -0.3 860,501 - +0.5 860,501 - +0.5 860,764 + GFF2165 0.12 +0.1 860,908 + GFF2165 0.19 +0.9
Or see this region's nucleotide sequence