Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2146 and GFF2147 are separated by 2 nucleotides GFF2147 and GFF2148 are separated by 20 nucleotides GFF2148 and GFF2149 are separated by 265 nucleotides
GFF2146 - hypothetical protein, at 835,068 to 836,120
GFF2146
GFF2147 - Bicarbonate transport ATP-binding protein CmpD, at 836,123 to 836,962
GFF2147
GFF2148 - Putative aliphatic sulfonates transport permease protein SsuC, at 836,983 to 837,828
GFF2148
GFF2149 - hypothetical protein, at 838,094 to 838,837
GFF2149
Position (kb) 836
837
838 Strain fitness (log2 ratio) -2
-1
0
1 at 836.125 kb on - strand at 836.601 kb on + strand, within GFF2147 at 836.640 kb on + strand, within GFF2147 at 836.640 kb on + strand, within GFF2147 at 836.641 kb on - strand, within GFF2147 at 836.641 kb on - strand, within GFF2147 at 836.859 kb on + strand, within GFF2147 at 836.859 kb on + strand, within GFF2147 at 836.860 kb on - strand, within GFF2147 at 836.860 kb on - strand, within GFF2147 at 836.860 kb on - strand, within GFF2147 at 836.966 kb on + strand at 836.967 kb on - strand at 837.094 kb on - strand, within GFF2148 at 837.094 kb on - strand, within GFF2148 at 837.329 kb on + strand, within GFF2148 at 837.329 kb on + strand, within GFF2148 at 837.329 kb on + strand, within GFF2148 at 837.330 kb on - strand, within GFF2148 at 837.330 kb on - strand, within GFF2148 at 837.330 kb on - strand, within GFF2148 at 837.377 kb on + strand, within GFF2148 at 837.377 kb on + strand, within GFF2148 at 837.378 kb on - strand, within GFF2148 at 837.956 kb on + strand at 837.956 kb on + strand at 837.956 kb on + strand at 837.956 kb on + strand at 837.956 kb on + strand at 837.956 kb on + strand at 837.956 kb on + strand at 837.957 kb on - strand at 837.957 kb on - strand at 837.957 kb on - strand at 837.957 kb on - strand at 837.957 kb on - strand at 837.957 kb on - strand at 837.957 kb on - strand at 837.957 kb on - strand at 837.957 kb on - strand at 837.957 kb on - strand at 837.957 kb on - strand at 838.148 kb on + strand at 838.148 kb on + strand at 838.149 kb on - strand at 838.149 kb on - strand at 838.149 kb on - strand at 838.149 kb on - strand at 838.157 kb on + strand at 838.157 kb on + strand at 838.157 kb on + strand at 838.192 kb on + strand, within GFF2149 at 838.394 kb on + strand, within GFF2149 at 838.395 kb on - strand, within GFF2149 at 838.395 kb on - strand, within GFF2149 at 838.395 kb on - strand, within GFF2149 at 838.395 kb on - strand, within GFF2149 at 838.395 kb on - strand, within GFF2149 at 838.395 kb on - strand, within GFF2149 at 838.556 kb on + strand, within GFF2149 at 838.556 kb on + strand, within GFF2149 at 838.556 kb on + strand, within GFF2149 at 838.662 kb on + strand, within GFF2149 at 838.662 kb on + strand, within GFF2149 at 838.663 kb on - strand, within GFF2149 at 838.663 kb on - strand, within GFF2149 at 838.663 kb on - strand, within GFF2149 at 838.667 kb on + strand, within GFF2149 at 838.709 kb on + strand, within GFF2149 at 838.709 kb on + strand, within GFF2149 at 838.709 kb on + strand, within GFF2149 at 838.710 kb on - strand, within GFF2149 at 838.710 kb on - strand, within GFF2149 at 838.751 kb on + strand, within GFF2149 at 838.751 kb on + strand, within GFF2149 at 838.752 kb on - strand, within GFF2149
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 836,125 - -0.6 836,601 + GFF2147 0.57 +0.1 836,640 + GFF2147 0.62 -0.6 836,640 + GFF2147 0.62 +0.5 836,641 - GFF2147 0.62 +0.3 836,641 - GFF2147 0.62 +0.1 836,859 + GFF2147 0.88 +0.2 836,859 + GFF2147 0.88 +0.5 836,860 - GFF2147 0.88 -0.9 836,860 - GFF2147 0.88 +0.1 836,860 - GFF2147 0.88 -0.7 836,966 + -0.6 836,967 - -2.3 837,094 - GFF2148 0.13 -0.7 837,094 - GFF2148 0.13 +0.3 837,329 + GFF2148 0.41 +0.5 837,329 + GFF2148 0.41 -0.2 837,329 + GFF2148 0.41 -0.2 837,330 - GFF2148 0.41 +0.4 837,330 - GFF2148 0.41 +0.7 837,330 - GFF2148 0.41 -0.2 837,377 + GFF2148 0.47 -1.3 837,377 + GFF2148 0.47 -0.1 837,378 - GFF2148 0.47 -0.1 837,956 + -0.6 837,956 + -0.2 837,956 + +0.0 837,956 + -0.6 837,956 + -0.3 837,956 + -0.4 837,956 + +0.0 837,957 - +0.3 837,957 - +0.7 837,957 - -0.7 837,957 - -0.3 837,957 - -0.1 837,957 - +0.4 837,957 - -0.4 837,957 - +0.2 837,957 - -0.6 837,957 - +0.6 837,957 - -0.2 838,148 + +1.3 838,148 + +0.7 838,149 - -1.3 838,149 - -1.1 838,149 - -0.3 838,149 - -0.1 838,157 + -0.2 838,157 + -1.4 838,157 + -0.4 838,192 + GFF2149 0.13 -0.3 838,394 + GFF2149 0.40 -0.7 838,395 - GFF2149 0.40 -1.5 838,395 - GFF2149 0.40 -1.4 838,395 - GFF2149 0.40 -0.6 838,395 - GFF2149 0.40 +0.2 838,395 - GFF2149 0.40 -1.0 838,395 - GFF2149 0.40 +0.2 838,556 + GFF2149 0.62 +0.3 838,556 + GFF2149 0.62 +0.4 838,556 + GFF2149 0.62 +0.8 838,662 + GFF2149 0.76 -0.0 838,662 + GFF2149 0.76 -0.6 838,663 - GFF2149 0.76 +0.2 838,663 - GFF2149 0.76 +0.8 838,663 - GFF2149 0.76 -0.9 838,667 + GFF2149 0.77 -0.4 838,709 + GFF2149 0.83 -1.0 838,709 + GFF2149 0.83 -1.7 838,709 + GFF2149 0.83 +0.1 838,710 - GFF2149 0.83 -1.0 838,710 - GFF2149 0.83 -1.3 838,751 + GFF2149 0.88 -0.2 838,751 + GFF2149 0.88 +1.2 838,752 - GFF2149 0.88 -1.0
Or see this region's nucleotide sequence