Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF212 and GFF213 are separated by 274 nucleotides GFF213 and GFF214 are separated by 272 nucleotides GFF214 and GFF215 are separated by 4 nucleotides GFF215 and GFF216 are separated by 48 nucleotides
GFF212 - Hydrogen peroxide-inducible genes activator, at 223,725 to 224,654
GFF212
GFF213 - hypothetical protein, at 224,929 to 225,090
GFF213
GFF214 - hypothetical protein, at 225,363 to 226,154
GFF214
GFF215 - hypothetical protein, at 226,159 to 226,569
GFF215
GFF216 - Chromosome partition protein Smc, at 226,618 to 228,036
GFF216
Position (kb) 225
226
227 Strain fitness (log2 ratio) -1
0
1 at 224.649 kb on + strand at 224.663 kb on - strand at 224.860 kb on + strand at 224.866 kb on + strand at 224.867 kb on - strand at 224.868 kb on + strand at 224.898 kb on + strand at 224.899 kb on - strand at 225.074 kb on + strand at 225.074 kb on + strand at 225.075 kb on - strand at 225.097 kb on - strand at 225.144 kb on + strand at 225.144 kb on + strand at 225.144 kb on + strand at 225.145 kb on - strand at 225.145 kb on - strand at 225.289 kb on + strand at 225.340 kb on + strand at 225.682 kb on - strand, within GFF214 at 225.730 kb on - strand, within GFF214 at 225.768 kb on + strand, within GFF214 at 225.898 kb on - strand, within GFF214 at 225.898 kb on - strand, within GFF214 at 225.904 kb on - strand, within GFF214 at 225.972 kb on - strand, within GFF214 at 226.352 kb on + strand, within GFF215 at 226.352 kb on + strand, within GFF215 at 226.353 kb on - strand, within GFF215 at 226.353 kb on - strand, within GFF215 at 226.353 kb on - strand, within GFF215
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 224,649 + -0.2 224,663 - +0.8 224,860 + +0.3 224,866 + +0.3 224,867 - -0.1 224,868 + -0.1 224,898 + +0.8 224,899 - +0.3 225,074 + +1.5 225,074 + +0.0 225,075 - +1.2 225,097 - +0.3 225,144 + +0.1 225,144 + -0.2 225,144 + +0.3 225,145 - -0.2 225,145 - -0.1 225,289 + -0.1 225,340 + +0.0 225,682 - GFF214 0.40 +0.3 225,730 - GFF214 0.46 +0.1 225,768 + GFF214 0.51 -0.0 225,898 - GFF214 0.68 -0.8 225,898 - GFF214 0.68 -0.5 225,904 - GFF214 0.68 +0.1 225,972 - GFF214 0.77 +0.4 226,352 + GFF215 0.47 +0.4 226,352 + GFF215 0.47 -0.1 226,353 - GFF215 0.47 +1.1 226,353 - GFF215 0.47 +0.1 226,353 - GFF215 0.47 +0.3
Or see this region's nucleotide sequence