Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2137 and GFF2138 are separated by 257 nucleotides GFF2138 and GFF2139 are separated by 325 nucleotides
GFF2137 - Vitamin B12 transporter BtuB, at 822,807 to 826,217
GFF2137
GFF2138 - hypothetical protein, at 826,475 to 827,191
GFF2138
GFF2139 - L-rhamnonate dehydratase, at 827,517 to 828,701
GFF2139
Position (kb) 826
827
828 Strain fitness (log2 ratio) -2
-1
0
1
2 at 825.579 kb on + strand, within GFF2137 at 825.682 kb on + strand, within GFF2137 at 825.683 kb on - strand, within GFF2137 at 825.683 kb on - strand, within GFF2137 at 825.683 kb on - strand, within GFF2137 at 825.683 kb on - strand, within GFF2137 at 825.683 kb on - strand, within GFF2137 at 825.686 kb on + strand, within GFF2137 at 825.686 kb on + strand, within GFF2137 at 825.720 kb on + strand, within GFF2137 at 825.763 kb on - strand, within GFF2137 at 825.786 kb on + strand, within GFF2137 at 825.786 kb on + strand, within GFF2137 at 825.786 kb on + strand, within GFF2137 at 825.786 kb on + strand, within GFF2137 at 825.803 kb on - strand, within GFF2137 at 825.877 kb on - strand at 825.878 kb on + strand at 825.878 kb on + strand at 825.878 kb on + strand at 825.878 kb on + strand at 825.878 kb on + strand at 825.878 kb on + strand at 825.878 kb on + strand at 825.878 kb on + strand at 825.879 kb on - strand at 825.879 kb on - strand at 825.952 kb on - strand at 825.987 kb on + strand at 825.987 kb on + strand at 825.987 kb on + strand at 825.987 kb on + strand at 825.987 kb on + strand at 825.988 kb on - strand at 825.988 kb on - strand at 825.988 kb on - strand at 825.988 kb on - strand at 825.988 kb on - strand at 825.993 kb on + strand at 825.994 kb on - strand at 825.994 kb on - strand at 825.994 kb on - strand at 826.057 kb on + strand at 826.057 kb on - strand at 826.057 kb on - strand at 826.057 kb on - strand at 826.058 kb on + strand at 826.058 kb on + strand at 826.058 kb on + strand at 826.058 kb on + strand at 826.059 kb on - strand at 826.059 kb on - strand at 826.059 kb on - strand at 826.059 kb on - strand at 826.059 kb on - strand at 826.059 kb on - strand at 826.059 kb on - strand at 826.059 kb on - strand at 826.206 kb on + strand at 826.207 kb on - strand at 826.227 kb on + strand at 826.227 kb on + strand at 826.227 kb on + strand at 826.227 kb on + strand at 826.347 kb on - strand at 826.368 kb on - strand at 826.432 kb on - strand at 826.432 kb on - strand at 826.435 kb on + strand at 826.435 kb on + strand at 826.436 kb on - strand at 826.436 kb on - strand at 826.436 kb on - strand at 826.436 kb on - strand at 826.493 kb on - strand at 826.493 kb on - strand at 826.544 kb on + strand at 826.546 kb on + strand at 826.598 kb on + strand, within GFF2138 at 826.623 kb on + strand, within GFF2138 at 826.623 kb on + strand, within GFF2138 at 826.623 kb on + strand, within GFF2138 at 826.623 kb on + strand, within GFF2138 at 826.623 kb on + strand, within GFF2138 at 826.624 kb on - strand, within GFF2138 at 826.624 kb on - strand, within GFF2138 at 826.624 kb on - strand, within GFF2138 at 826.664 kb on + strand, within GFF2138 at 826.681 kb on - strand, within GFF2138 at 826.692 kb on + strand, within GFF2138 at 826.692 kb on + strand, within GFF2138 at 826.693 kb on - strand, within GFF2138 at 826.744 kb on + strand, within GFF2138 at 826.744 kb on + strand, within GFF2138 at 826.744 kb on + strand, within GFF2138 at 826.759 kb on - strand, within GFF2138 at 826.813 kb on + strand, within GFF2138 at 826.906 kb on - strand, within GFF2138 at 826.910 kb on - strand, within GFF2138 at 826.910 kb on - strand, within GFF2138 at 826.948 kb on + strand, within GFF2138 at 826.949 kb on - strand, within GFF2138 at 826.949 kb on - strand, within GFF2138 at 826.949 kb on - strand, within GFF2138 at 826.951 kb on + strand, within GFF2138 at 826.951 kb on + strand, within GFF2138 at 827.110 kb on + strand, within GFF2138 at 827.126 kb on - strand at 827.186 kb on - strand at 827.231 kb on + strand at 827.232 kb on - strand at 827.232 kb on - strand at 827.279 kb on + strand at 827.398 kb on - strand at 827.398 kb on - strand at 827.462 kb on - strand at 827.527 kb on + strand at 827.527 kb on + strand at 827.527 kb on + strand at 827.605 kb on - strand at 827.705 kb on + strand, within GFF2139 at 827.705 kb on + strand, within GFF2139 at 827.706 kb on - strand, within GFF2139 at 827.728 kb on + strand, within GFF2139 at 827.729 kb on - strand, within GFF2139 at 827.729 kb on - strand, within GFF2139 at 827.729 kb on - strand, within GFF2139 at 827.734 kb on + strand, within GFF2139 at 827.734 kb on + strand, within GFF2139 at 827.734 kb on + strand, within GFF2139 at 827.734 kb on + strand, within GFF2139 at 827.734 kb on + strand, within GFF2139 at 827.734 kb on + strand, within GFF2139 at 827.734 kb on + strand, within GFF2139 at 827.734 kb on + strand, within GFF2139 at 827.734 kb on + strand, within GFF2139 at 827.734 kb on + strand, within GFF2139 at 827.735 kb on - strand, within GFF2139 at 827.792 kb on - strand, within GFF2139 at 827.950 kb on + strand, within GFF2139 at 827.951 kb on - strand, within GFF2139 at 827.960 kb on - strand, within GFF2139 at 827.960 kb on - strand, within GFF2139 at 827.960 kb on - strand, within GFF2139 at 827.960 kb on - strand, within GFF2139 at 828.035 kb on - strand, within GFF2139 at 828.064 kb on + strand, within GFF2139 at 828.064 kb on + strand, within GFF2139 at 828.064 kb on + strand, within GFF2139 at 828.065 kb on - strand, within GFF2139 at 828.065 kb on - strand, within GFF2139
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 825,579 + GFF2137 0.81 -0.1 825,682 + GFF2137 0.84 +0.3 825,683 - GFF2137 0.84 -0.5 825,683 - GFF2137 0.84 -0.1 825,683 - GFF2137 0.84 +0.5 825,683 - GFF2137 0.84 +0.9 825,683 - GFF2137 0.84 -0.1 825,686 + GFF2137 0.84 -0.2 825,686 + GFF2137 0.84 -1.7 825,720 + GFF2137 0.85 -0.0 825,763 - GFF2137 0.87 +1.1 825,786 + GFF2137 0.87 +0.1 825,786 + GFF2137 0.87 +0.2 825,786 + GFF2137 0.87 +0.1 825,786 + GFF2137 0.87 -0.5 825,803 - GFF2137 0.88 -1.3 825,877 - +0.5 825,878 + -0.0 825,878 + -0.8 825,878 + +0.2 825,878 + -1.0 825,878 + -1.3 825,878 + -0.3 825,878 + +1.8 825,878 + -0.4 825,879 - -0.8 825,879 - +1.1 825,952 - +1.3 825,987 + +0.4 825,987 + +0.1 825,987 + +0.0 825,987 + -0.5 825,987 + +0.4 825,988 - -0.1 825,988 - -0.8 825,988 - +1.3 825,988 - +0.2 825,988 - -0.2 825,993 + +1.2 825,994 - -0.0 825,994 - +0.1 825,994 - +0.2 826,057 + -0.2 826,057 - -0.9 826,057 - -1.0 826,057 - +0.1 826,058 + -0.4 826,058 + -0.5 826,058 + +0.0 826,058 + +0.1 826,059 - +0.4 826,059 - -0.2 826,059 - +0.7 826,059 - -0.6 826,059 - -0.6 826,059 - -0.1 826,059 - +0.4 826,059 - +0.7 826,206 + -0.3 826,207 - +0.6 826,227 + +0.9 826,227 + +0.2 826,227 + -0.6 826,227 + -0.0 826,347 - +0.1 826,368 - -0.2 826,432 - -0.5 826,432 - -0.2 826,435 + +0.5 826,435 + -0.8 826,436 - -0.6 826,436 - +0.1 826,436 - +0.0 826,436 - -0.3 826,493 - -0.4 826,493 - +0.1 826,544 + +0.1 826,546 + +0.2 826,598 + GFF2138 0.17 +0.2 826,623 + GFF2138 0.21 -0.3 826,623 + GFF2138 0.21 +0.8 826,623 + GFF2138 0.21 -0.4 826,623 + GFF2138 0.21 -0.0 826,623 + GFF2138 0.21 -1.6 826,624 - GFF2138 0.21 +0.2 826,624 - GFF2138 0.21 +1.0 826,624 - GFF2138 0.21 +0.4 826,664 + GFF2138 0.26 -0.3 826,681 - GFF2138 0.29 -0.3 826,692 + GFF2138 0.30 -0.2 826,692 + GFF2138 0.30 -0.0 826,693 - GFF2138 0.30 -0.6 826,744 + GFF2138 0.38 +0.5 826,744 + GFF2138 0.38 -0.1 826,744 + GFF2138 0.38 -0.0 826,759 - GFF2138 0.40 -1.1 826,813 + GFF2138 0.47 -0.1 826,906 - GFF2138 0.60 +0.1 826,910 - GFF2138 0.61 +0.4 826,910 - GFF2138 0.61 +0.4 826,948 + GFF2138 0.66 -0.3 826,949 - GFF2138 0.66 +0.8 826,949 - GFF2138 0.66 -0.3 826,949 - GFF2138 0.66 +0.5 826,951 + GFF2138 0.66 +0.5 826,951 + GFF2138 0.66 +0.0 827,110 + GFF2138 0.89 -1.3 827,126 - -0.4 827,186 - +0.9 827,231 + +0.3 827,232 - -0.2 827,232 - +0.1 827,279 + -0.3 827,398 - +0.4 827,398 - -0.3 827,462 - -0.7 827,527 + +0.5 827,527 + +0.5 827,527 + -0.4 827,605 - -0.3 827,705 + GFF2139 0.16 -0.0 827,705 + GFF2139 0.16 +0.3 827,706 - GFF2139 0.16 +0.7 827,728 + GFF2139 0.18 +0.3 827,729 - GFF2139 0.18 -0.6 827,729 - GFF2139 0.18 +0.1 827,729 - GFF2139 0.18 +1.0 827,734 + GFF2139 0.18 -0.0 827,734 + GFF2139 0.18 +1.6 827,734 + GFF2139 0.18 +0.2 827,734 + GFF2139 0.18 -0.9 827,734 + GFF2139 0.18 -0.1 827,734 + GFF2139 0.18 -0.2 827,734 + GFF2139 0.18 -0.5 827,734 + GFF2139 0.18 -0.0 827,734 + GFF2139 0.18 +0.9 827,734 + GFF2139 0.18 +0.0 827,735 - GFF2139 0.18 -0.2 827,792 - GFF2139 0.23 -0.7 827,950 + GFF2139 0.37 -1.8 827,951 - GFF2139 0.37 +0.3 827,960 - GFF2139 0.37 +0.0 827,960 - GFF2139 0.37 +0.7 827,960 - GFF2139 0.37 +0.1 827,960 - GFF2139 0.37 -1.2 828,035 - GFF2139 0.44 -1.4 828,064 + GFF2139 0.46 +0.4 828,064 + GFF2139 0.46 -0.3 828,064 + GFF2139 0.46 +0.6 828,065 - GFF2139 0.46 -0.2 828,065 - GFF2139 0.46 -0.7
Or see this region's nucleotide sequence