Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2135 and GFF2136 are separated by 96 nucleotides GFF2136 and GFF2137 are separated by 110 nucleotides
GFF2135 - putative RNA polymerase sigma factor FecI, at 821,137 to 821,640
GFF2135
GFF2136 - hypothetical protein, at 821,737 to 822,696
GFF2136
GFF2137 - Vitamin B12 transporter BtuB, at 822,807 to 826,217
GFF2137
Position (kb) 821
822
823 Strain fitness (log2 ratio) -2
-1
0
1 at 820.791 kb on + strand at 820.791 kb on + strand at 820.792 kb on - strand at 820.842 kb on + strand at 820.843 kb on - strand at 820.863 kb on - strand at 821.080 kb on - strand at 821.302 kb on + strand, within GFF2135 at 821.303 kb on - strand, within GFF2135 at 821.430 kb on + strand, within GFF2135 at 821.430 kb on + strand, within GFF2135 at 821.430 kb on + strand, within GFF2135 at 821.431 kb on - strand, within GFF2135 at 821.434 kb on + strand, within GFF2135 at 821.435 kb on - strand, within GFF2135 at 821.435 kb on - strand, within GFF2135 at 821.435 kb on - strand, within GFF2135 at 821.600 kb on - strand at 821.638 kb on + strand at 821.638 kb on + strand at 821.639 kb on - strand at 821.639 kb on - strand at 821.639 kb on - strand at 821.639 kb on - strand at 821.683 kb on + strand at 821.684 kb on - strand at 821.684 kb on - strand at 821.897 kb on - strand, within GFF2136 at 821.991 kb on + strand, within GFF2136 at 821.991 kb on + strand, within GFF2136 at 821.991 kb on + strand, within GFF2136 at 821.991 kb on + strand, within GFF2136 at 821.992 kb on - strand, within GFF2136 at 822.086 kb on + strand, within GFF2136 at 822.087 kb on - strand, within GFF2136 at 822.087 kb on - strand, within GFF2136 at 822.135 kb on + strand, within GFF2136 at 822.399 kb on + strand, within GFF2136 at 822.399 kb on + strand, within GFF2136 at 822.744 kb on + strand at 822.745 kb on - strand at 822.745 kb on - strand at 822.745 kb on - strand at 823.083 kb on + strand at 823.083 kb on + strand at 823.084 kb on - strand at 823.160 kb on + strand, within GFF2137 at 823.160 kb on + strand, within GFF2137 at 823.161 kb on - strand, within GFF2137 at 823.161 kb on - strand, within GFF2137 at 823.161 kb on - strand, within GFF2137 at 823.444 kb on - strand, within GFF2137 at 823.525 kb on - strand, within GFF2137 at 823.549 kb on - strand, within GFF2137 at 823.640 kb on + strand, within GFF2137 at 823.640 kb on + strand, within GFF2137 at 823.640 kb on + strand, within GFF2137 at 823.641 kb on - strand, within GFF2137 at 823.677 kb on - strand, within GFF2137 at 823.680 kb on + strand, within GFF2137 at 823.680 kb on + strand, within GFF2137 at 823.681 kb on - strand, within GFF2137 at 823.681 kb on - strand, within GFF2137 at 823.681 kb on - strand, within GFF2137
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 820,791 + +0.3 820,791 + -1.0 820,792 - -0.1 820,842 + +0.1 820,843 - -0.9 820,863 - -0.9 821,080 - +0.4 821,302 + GFF2135 0.33 +1.0 821,303 - GFF2135 0.33 -0.2 821,430 + GFF2135 0.58 +0.2 821,430 + GFF2135 0.58 -0.6 821,430 + GFF2135 0.58 +0.3 821,431 - GFF2135 0.58 +1.0 821,434 + GFF2135 0.59 -1.2 821,435 - GFF2135 0.59 -0.2 821,435 - GFF2135 0.59 +0.9 821,435 - GFF2135 0.59 +0.7 821,600 - +0.3 821,638 + -0.5 821,638 + -0.2 821,639 - -0.5 821,639 - -0.3 821,639 - -0.3 821,639 - -0.5 821,683 + +0.5 821,684 - -1.0 821,684 - -0.0 821,897 - GFF2136 0.17 -0.2 821,991 + GFF2136 0.26 -0.2 821,991 + GFF2136 0.26 -1.5 821,991 + GFF2136 0.26 -0.7 821,991 + GFF2136 0.26 +0.1 821,992 - GFF2136 0.27 -0.2 822,086 + GFF2136 0.36 -2.2 822,087 - GFF2136 0.36 +0.3 822,087 - GFF2136 0.36 +0.7 822,135 + GFF2136 0.41 +0.3 822,399 + GFF2136 0.69 -0.1 822,399 + GFF2136 0.69 +0.3 822,744 + -0.9 822,745 - -0.4 822,745 - +0.2 822,745 - +0.6 823,083 + -0.2 823,083 + -0.1 823,084 - -0.2 823,160 + GFF2137 0.10 -0.6 823,160 + GFF2137 0.10 -0.9 823,161 - GFF2137 0.10 -0.3 823,161 - GFF2137 0.10 +0.1 823,161 - GFF2137 0.10 -0.5 823,444 - GFF2137 0.19 +0.5 823,525 - GFF2137 0.21 +0.7 823,549 - GFF2137 0.22 +0.3 823,640 + GFF2137 0.24 +0.3 823,640 + GFF2137 0.24 -0.5 823,640 + GFF2137 0.24 -0.3 823,641 - GFF2137 0.24 +0.3 823,677 - GFF2137 0.26 +0.2 823,680 + GFF2137 0.26 -0.3 823,680 + GFF2137 0.26 -0.5 823,681 - GFF2137 0.26 -0.4 823,681 - GFF2137 0.26 +0.3 823,681 - GFF2137 0.26 +0.6
Or see this region's nucleotide sequence