Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2133 and GFF2134 are separated by 102 nucleotides GFF2134 and GFF2135 are separated by 802 nucleotides
GFF2133 - hypothetical protein, at 818,103 to 819,020
GFF2133
GFF2134 - Prophage integrase IntA, at 819,123 to 820,334
GFF2134
GFF2135 - putative RNA polymerase sigma factor FecI, at 821,137 to 821,640
GFF2135
Position (kb) 819
820
821 Strain fitness (log2 ratio) -2
-1
0
1
2 at 818.271 kb on + strand, within GFF2133 at 818.272 kb on - strand, within GFF2133 at 818.272 kb on - strand, within GFF2133 at 818.272 kb on - strand, within GFF2133 at 818.275 kb on + strand, within GFF2133 at 818.275 kb on + strand, within GFF2133 at 818.275 kb on + strand, within GFF2133 at 818.276 kb on - strand, within GFF2133 at 818.276 kb on - strand, within GFF2133 at 818.276 kb on - strand, within GFF2133 at 818.302 kb on - strand, within GFF2133 at 818.329 kb on - strand, within GFF2133 at 818.337 kb on + strand, within GFF2133 at 818.337 kb on + strand, within GFF2133 at 818.413 kb on + strand, within GFF2133 at 818.463 kb on + strand, within GFF2133 at 818.464 kb on - strand, within GFF2133 at 818.465 kb on + strand, within GFF2133 at 818.466 kb on - strand, within GFF2133 at 818.467 kb on + strand, within GFF2133 at 818.543 kb on + strand, within GFF2133 at 818.555 kb on + strand, within GFF2133 at 818.556 kb on - strand, within GFF2133 at 818.673 kb on + strand, within GFF2133 at 818.728 kb on - strand, within GFF2133 at 818.728 kb on - strand, within GFF2133 at 818.728 kb on - strand, within GFF2133 at 818.753 kb on + strand, within GFF2133 at 818.839 kb on + strand, within GFF2133 at 818.840 kb on - strand, within GFF2133 at 818.889 kb on + strand, within GFF2133 at 818.889 kb on + strand, within GFF2133 at 818.889 kb on + strand, within GFF2133 at 818.889 kb on + strand, within GFF2133 at 818.910 kb on + strand, within GFF2133 at 818.946 kb on + strand at 818.947 kb on - strand at 818.989 kb on + strand at 819.124 kb on + strand at 819.125 kb on - strand at 819.178 kb on + strand at 819.178 kb on + strand at 819.178 kb on + strand at 819.178 kb on + strand at 819.178 kb on + strand at 819.178 kb on + strand at 819.178 kb on + strand at 819.179 kb on - strand at 819.179 kb on - strand at 819.179 kb on - strand at 819.179 kb on - strand at 819.179 kb on - strand at 819.216 kb on + strand at 819.235 kb on + strand at 819.263 kb on + strand, within GFF2134 at 819.263 kb on + strand, within GFF2134 at 819.264 kb on - strand, within GFF2134 at 819.302 kb on - strand, within GFF2134 at 819.481 kb on - strand, within GFF2134 at 819.823 kb on - strand, within GFF2134 at 819.823 kb on - strand, within GFF2134 at 819.933 kb on - strand, within GFF2134 at 819.952 kb on + strand, within GFF2134 at 819.953 kb on - strand, within GFF2134 at 819.953 kb on - strand, within GFF2134 at 819.953 kb on - strand, within GFF2134 at 819.953 kb on - strand, within GFF2134 at 820.205 kb on - strand, within GFF2134 at 820.249 kb on + strand at 820.249 kb on + strand at 820.249 kb on + strand at 820.249 kb on + strand at 820.250 kb on - strand at 820.250 kb on - strand at 820.355 kb on - strand at 820.378 kb on + strand at 820.379 kb on - strand at 820.393 kb on + strand at 820.394 kb on - strand at 820.394 kb on - strand at 820.394 kb on - strand at 820.472 kb on - strand at 820.476 kb on + strand at 820.488 kb on + strand at 820.488 kb on + strand at 820.488 kb on + strand at 820.489 kb on - strand at 820.489 kb on - strand at 820.517 kb on - strand at 820.525 kb on + strand at 820.525 kb on + strand at 820.526 kb on - strand at 820.526 kb on - strand at 820.541 kb on - strand at 820.557 kb on + strand at 820.615 kb on + strand at 820.615 kb on + strand at 820.616 kb on - strand at 820.633 kb on + strand at 820.634 kb on - strand at 820.634 kb on - strand at 820.707 kb on + strand at 820.707 kb on + strand at 820.708 kb on - strand at 820.708 kb on - strand at 820.708 kb on - strand at 820.791 kb on + strand at 820.791 kb on + strand at 820.792 kb on - strand at 820.842 kb on + strand at 820.843 kb on - strand at 820.863 kb on - strand at 821.080 kb on - strand at 821.302 kb on + strand, within GFF2135 at 821.303 kb on - strand, within GFF2135
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 818,271 + GFF2133 0.18 +0.2 818,272 - GFF2133 0.18 -0.1 818,272 - GFF2133 0.18 +0.5 818,272 - GFF2133 0.18 -0.9 818,275 + GFF2133 0.19 -0.5 818,275 + GFF2133 0.19 -0.4 818,275 + GFF2133 0.19 -0.8 818,276 - GFF2133 0.19 +0.6 818,276 - GFF2133 0.19 +0.1 818,276 - GFF2133 0.19 -0.2 818,302 - GFF2133 0.22 -0.7 818,329 - GFF2133 0.25 -1.4 818,337 + GFF2133 0.25 +0.4 818,337 + GFF2133 0.25 -0.4 818,413 + GFF2133 0.34 +0.2 818,463 + GFF2133 0.39 +1.3 818,464 - GFF2133 0.39 -0.1 818,465 + GFF2133 0.39 -0.7 818,466 - GFF2133 0.40 -0.2 818,467 + GFF2133 0.40 +0.1 818,543 + GFF2133 0.48 +0.1 818,555 + GFF2133 0.49 +1.1 818,556 - GFF2133 0.49 -2.5 818,673 + GFF2133 0.62 +1.5 818,728 - GFF2133 0.68 +1.2 818,728 - GFF2133 0.68 -0.3 818,728 - GFF2133 0.68 -0.3 818,753 + GFF2133 0.71 -0.3 818,839 + GFF2133 0.80 -0.1 818,840 - GFF2133 0.80 -0.1 818,889 + GFF2133 0.86 +0.5 818,889 + GFF2133 0.86 +0.2 818,889 + GFF2133 0.86 -0.1 818,889 + GFF2133 0.86 -0.1 818,910 + GFF2133 0.88 +1.6 818,946 + -0.8 818,947 - -0.5 818,989 + +0.1 819,124 + +0.5 819,125 - -0.1 819,178 + -2.2 819,178 + +0.1 819,178 + -0.1 819,178 + +0.1 819,178 + -0.7 819,178 + -0.6 819,178 + -0.3 819,179 - +0.3 819,179 - +0.4 819,179 - -0.5 819,179 - +0.2 819,179 - -0.2 819,216 + -0.6 819,235 + +0.5 819,263 + GFF2134 0.12 +0.4 819,263 + GFF2134 0.12 +0.3 819,264 - GFF2134 0.12 -0.9 819,302 - GFF2134 0.15 +0.2 819,481 - GFF2134 0.30 -0.5 819,823 - GFF2134 0.58 +2.4 819,823 - GFF2134 0.58 -0.7 819,933 - GFF2134 0.67 +0.3 819,952 + GFF2134 0.68 +0.0 819,953 - GFF2134 0.68 +0.3 819,953 - GFF2134 0.68 -1.9 819,953 - GFF2134 0.68 -0.7 819,953 - GFF2134 0.68 +0.1 820,205 - GFF2134 0.89 -1.0 820,249 + -0.1 820,249 + +1.2 820,249 + -0.5 820,249 + -1.1 820,250 - -1.4 820,250 - +0.6 820,355 - +0.8 820,378 + +0.2 820,379 - +0.1 820,393 + -2.1 820,394 - +0.9 820,394 - +0.7 820,394 - -0.0 820,472 - -0.0 820,476 + -0.2 820,488 + +0.1 820,488 + -0.1 820,488 + +0.4 820,489 - -0.0 820,489 - -1.0 820,517 - -0.1 820,525 + -0.6 820,525 + -0.4 820,526 - -0.1 820,526 - -0.3 820,541 - -0.1 820,557 + -0.1 820,615 + -0.3 820,615 + -0.6 820,616 - +0.4 820,633 + -0.6 820,634 - -2.0 820,634 - -0.3 820,707 + -0.7 820,707 + -1.3 820,708 - +0.4 820,708 - -0.5 820,708 - +0.5 820,791 + +0.3 820,791 + -1.0 820,792 - -0.1 820,842 + +0.1 820,843 - -0.9 820,863 - -0.9 821,080 - +0.4 821,302 + GFF2135 0.33 +1.0 821,303 - GFF2135 0.33 -0.2
Or see this region's nucleotide sequence